c3h2orf49 (cssa25h2orf49)


Basic Information

Item Value
gene id c3h2orf49
gene name cssa25h2orf49
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 73018800 ~ 73022950 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597932.2
GTCACAACCAGTCGTAGAGGATGCTGGGGCGAGAGGGCAAAGATGGCGCGCTCCACCAACATGGGACGTGAAGGGAAAGACACATCTCAGGATAGAGGCGCTTCTAACGCAGATCTCTTACTACACCCCGAGCTCCTGTCTCAGGAGTTTATCCAGTTGGTTCTGAATGAGAAAAAGATAACCAGTGGAGACGAAGGGAGCCGCGACCAGCTCACGGCTCTCTACCTCCGGCACGTCATCCCCCTCCCGCAGAGAGCGCTGCCAAACAACCGCTGGGGAAAGAGGATGGAGCAGACTCGAGCGCGACAGAGCACAGCCAGCGGACAGTCTCGTAGCTTCACTGACGACCACAACAGTAAGAGGCCTCTGATCGTGTTCGATGGCAGCTCCTCTAAAAGTGGCCCCGTCAGACTGAAAAAGCCAGAGGGTCAGACCTCGGGGTCTGGCGTGACCGACAAATTCAAGCACCCTCCCTCCATGAACCTCTTCAGCCCCATACGCAAGCTGTCCAGCACCACCCCTACCCCCTCGTCCTCCCACAGCCCAGGAGGCCCCCATAGGAGTCCCACTGGGAATAAGGGTCTGGGgagccccccctcctcctccaagtCAGTTAATCTCAAACGGGAGGCAGACAGCTCGGGTGAACTCAAAGAAAAGAAAAAGATCCAGAAAGTGACCTGGCCTTGACCCTGGACCGTACCCAGAGACCCACCACTCCACTGTAGAGCAGTGATGAGCCACCTCACACTGGGGCATTCTCTGCCAGAGTCGGGACAATCACAGAACGGGTGGTGACATCCGTCCTCATTCACCTAACTGACCCCAGAACTACTCTCTGACCCTTTACCTGACCCTCAAGTGTCCTTACAGTGAGTACTCTGCTCCTGGGACTTTACTGACTCTTAATGCAGACATGGCACCACAATATTTCTACGTTCATAAGTATTTTGTGGAATAAGCAGTTTAACCCTCAATTCTGCTCTATGCATTATAATTCTGTGATGTGACCTACCTGAAATCCTCTTAGAACAGTTAGAGTTCATCCTTCCAGGGCTGTTAGAGCTCAAGTTGAGGTTGATGGTGTTTAACTTGATAGAACTTTGGGTCTACAATGCTAAGTTGTTATGCATCTTCATACGTCTGTGTGGCCGTACCATATCCACAGTGGGGCATGATGGGTAAGGGATTTCTCTGGGTTTTGATACTGATTTAGATGAAATCCTCAGTAGGAGGAACATTGCCACTGGCCGCCCCACCCCCGTTATTGTTGGTGAGGTGCATCGTAATTGTAAAACTCATTGCAGTACAATGATGTTGGGCGGGGGGGCAGTGTTTTGTTGTTTGCAGGAACTTCTTTGTTGCTGTTTCACAatttaaggattccagctttattGTATTGGTACTGTGGCACTTGCATTTGTAATGGAAGTTTAACTAGTGTGCCTTGCCTTGAGTGGGGGTGCATTTGAATTAAATGGAAGTGAACCACCAGATGGTGCCAGAGACTCAGTCCTGCATGATTTGCAAGCGCCTGAGAAAGACTTTGCTCctggtctaggatcagattaGCCAACCTTGAATTCTACTCTTTACCATTAAGGCATCAAAGCATACCTGACCCAGGACCAGCAGTTAGGGGCAACTTGTACCAACTCAAAGGCATTGTAAAAGATTTTCCCCAAATGTATTTAGCCGCCTCTACGTTCCTATAATGTAGATGTATAGAGGGAAGTGCCCATCAACTGCCCCTTGTTGGACTCCATCCTCTAACTGCCACCGCAGCTAAAGAAAACCCTAGAGGAAACACTTAACTTCATGTCACTTCCTTAGTCACACACGGTGTACAGCAGTTGGTGCATTTTTATACGTCTTTATTTGGACTTCAGACACTGACTTCCTGTCAGAGCCCTTGTGACTGATAAGAGACATGTCTGTTGGCTCTCACCTTAATAGGCATGGCTCATCGTTACCAAGCATTTGCACCAGTGTCAGTCAAGTGTATACGTGTTGGGGGTGATAATAAACAGCGTTTAAAAACCAAAC
>TU334410
GGCAAAGATGGCGCGCTCCACCAACATGGGACGTGAAGGGAAAGACACATCTCAGGATAGAGGCGCTTCTAACGCAGATCTCTTACTACACCCCGAGCTCCTGTCTCAGGAGTTTATCCAGTTGGTTCTGAATGAGAAAAAGATAACCAGTGGAGACGAAGGGAGCCGCGACCAGCTCACGGCTCTCTACCTCCGGCACGTCATCCCCCTCCCGCAGAGAGCGCTGCCAAACAACCGCTGGGGAAAGAGGATGGAGCAGACTCGAGCGCGACAGAGCACAGCCAGCGGACAGTCTCCTTCACTGACGACCACAACAGTAAGAGGCCTCTGATCGTGTTCGATGGCAGCTCCTCTAAAAGTGGCCCCGTCAGACTGAAAAAGCCAGAGGGTCAGACCTCGGGGTCTGGCGTGACCGACAAATTCAAGCACCCTCCCTCCATGAACCTCTTCAGCCCCATACGCAAGCTGTCCAGCACCACCCCTACCCCCTCGTCCTCCCACAGCCCAGGAGGCCCCCATAGGAGTCCCACTGGGAATAAGGGTCTGGGgagccccccctcctcctccaagtCAGTTAATCTCAAACGGGAGGCAGACAGCTCGGGTGAACTCAAAGAAAAGAAAAAGATCCAGAAAGTGACCTGGCCTTGACCCTGGACCGTACCCAGAGACCCACCACTCCACTGTAGAGCAGTGATGAGCCACCTCACACTGGGGCATTCTCTGCCAGAGTCGGGACAATCACAGAACGGGTGGTGACATCCGTCCTCATTCACCTAACTGACCCCAGAACTACTCTCTGACCCTTTACCTGACCCTCAAGTGTCCTTACAGTGAGTACTCTGCTCCTGGGACTTTACTGACTCTTAATGCAGACATGGCACCACAATATTTCTACGTTCATAAGTATTTTGTGGAATAAGCAGTTTAACCCTCAATTCTGCTCTATGCATTATAATTCTGTGATGTGACCTACCTGAAATCCTCTTAGAACAGTTAGAGTTCATCCTTCCAGGGCTGTTAGAGCTCAAGTTGAGGTTGATGGTGTTTAACTTGATAGAACTTTGGGTCTACAATGCTAAGTTGTTATGCATCTTCATACGTCTGTGTGGCCGTACCATATCCACAGTGGGGCATGATGGGTAAGGGATTTCTCTGGGTTTTGATACTGATTTAGATGAAATCCTCAGTAGGAGGAACATTGCCACTGGCCGCCCCACCCCCGTTATTGTTGGTGAGGTGCATCGTAATTGTAAAACTCATTGCAGTACAATGATGTTGGGCGGGGGGGCAGTGTTTTGTTGTTTGCAGGAACTTCTTTGTTGCTGTTTCACAatttaaggattccagctttattGTATTGGTACTGTGGCACTTGCATTTGTAATGGAAGTTTAACTAGTGTGCCTTGCCTTGAGTGGGGGTGCATTTGAATTAAATGGAAGTGAACCACCAGATGGTGCCAGAGACTCAGTCCTGCATGATTTGCAAGCGCCTGAGAAAGACTTTGCTCctggtctaggatcagattaGCCAACCTTGAATTCTACTCTTTACCATTAAGGCATCAAAGCATACCTGACCCAGGACCAGCAGTTAGGGGCAACTTGTACCAACTCAAAGGCATTGTAAAAGATTTTCCCCAAATGTATTTAGCCGCCTCTACGTTCCTATAATGTAGATGTATAGAGGGAAGTGCCCATCAACTGCCCCTTGTTGGACTCCATCCTCTAACTGCCACCGCAGCTAAAGAAAACCCTAGAGGAAACACTTAACTTCATGTCACTTCCTTAGTCACACACGGTGTACAGCAGTTGGTGCATTTTTATACGTCTTTATTTGGACTTCAGACACTGACTTCCTGTCAGAGCCCTTGTGACTGATAAGAGACATGTCTGTTGGCTCTCACCTTAATAGGCATGGCTCATCGTTACCAAGCATTTGCACCAGTGTCAGTCAAGTGTATACGTGTTGGGGGTGATAATAAACAGCGTTTAAA

Function

NR:

description
ashwin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597932.2 False 2046 mRNA 0.49 4 73018800 73022950
TU334410 True 1999 TUCP 0.49 4 73018835 73022942

Neighbor

gene id symbol gene type direction distance location
gpr45 LOC106586773 coding upstream 943 73011523 ~ 73017857 (+)
LOC110520540 pou3f3 coding upstream 44924 72970789 ~ 72973876 (+)
LOC110520538 tmem182 coding upstream 127618 72881860 ~ 72891182 (+)
slc9a2 nhe2 coding upstream 149473 72838996 ~ 72869327 (+)
LOC118964325 NA coding upstream 199729 72817720 ~ 72820762 (+)
LOC110520544 NA coding downstream 2498 73025448 ~ 73048305 (+)
nck2a nck2 coding downstream 45795 73068745 ~ 73121183 (+)
LOC110520546 LOC106586770 coding downstream 110920 73133510 ~ 73140625 (+)
ecrg4a cssa25h2orf40 coding downstream 128167 73148293 ~ 73162405 (+)
tmtops2b LOC106586769 coding downstream 278082 73301032 ~ 73347439 (+)
G294815 NA non-coding upstream 57650 72960695 ~ 72961150 (+)
G294775 NA non-coding upstream 116211 72902384 ~ 72902589 (+)
G294769 NA non-coding upstream 120751 72897831 ~ 72898049 (+)
G294591 NA non-coding upstream 197433 72820918 ~ 72821367 (+)
G294856 NA non-coding downstream 34276 73057226 ~ 73057431 (+)
G294857 NA non-coding downstream 36246 73059196 ~ 73059524 (+)
G294942 NA non-coding downstream 194098 73217048 ~ 73221797 (+)
G295017 NA non-coding downstream 324851 73347801 ~ 73349020 (+)
G295040 NA non-coding downstream 439414 73462364 ~ 73463989 (+)
G294772 NA other upstream 119166 72899268 ~ 72899634 (+)
G294162 NA other upstream 726217 72290348 ~ 72292583 (+)
G294147 NA other upstream 768813 72248960 ~ 72249987 (+)
LOC110520522 LOC106586718 other upstream 1043416 71947367 ~ 71975611 (+)
G293450 NA other upstream 1280625 71737805 ~ 71738175 (+)
G295230 NA other downstream 930296 73953246 ~ 73957789 (+)
G295359 NA other downstream 1155493 74178443 ~ 74179342 (+)
G295421 NA other downstream 1279152 74302102 ~ 74302604 (+)

Expression


Co-expression Network