LOC110505436 (LOC106581976)


Basic Information

Item Value
gene id LOC110505436
gene name LOC106581976
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 73547199 ~ 73561315 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021584649.2
TCTCGTGTGGAGCGTGTTCTCAGACGCTCAAGAGCATTTCCAGGATATTTCAGTTCACTGCTCAGTCGTGTGCAAGAACTATGGACAGCAAGGGGATTTTGTCTCTCACCCTTCTACTCCTCTTGTCACAGAgtcctgcctccctctctttgaCAGTGAGCACCAGTGAGGCCAAAATGGAGGTCCACGAGAACACagacgCTGTGCTGTCCTGTCAGTTCAAGACAGAGAAGGAGACTAACCCTCGTATTGAGTGGAAGAAGAAAGGGAAGGACATCCACTTTGTTTATTTCGATGGAAAATTCACCGGATCCTTTGCAGGTCGGGCCAAGATCGAGGGCGCAACGGTGACACTGCATGCCGTTACCCAGAAGGACTCTGGGTTGTATCGCTGTGAGGTCAGCGCACCAGCAGACCACACAAACCTAGGAGAGGTCAATGTCACCCTCAACGTACTGGTGCCCCCCCACACCCCGTTCTGTGAGGTGCCCAGCTCAGTGCTGTCTGGGACAAGTGTAGAGCTCCACTGTAAGGACAAACTCAGTGTGCCCCCGTCTACCTTCCTCTGGTATAAAGACAACAAGGCCCTGAGCGCCACACACACCCCTGACATCGTCtatagcatggacactgacacgGGAACACTGAATATTAAGAGTGTGTCCAAGGCCGACTCAGGCCAATACCGCTGTGAAGTCTCCAATCGCGTGGGGGCGTCCAAAAGCTCTGTGGCCCATCACATGAAGGTCATAGAATATCCGTTGAGCATGACGACATTGATAGCCGGAGCTGTAGGCCTCTTCCTGCTCATCCTCATATGCTGCCTGGATGTGTGTCTCCCATTGACAGGGCTGCTGCAAAATGGtccacctcctccccccaccAGAAATCCCAAGAACTACAAACACACCCAGTCCTTCATGATCTGAGGGtatagcacgcacacacacacacacataaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacac
>XM_021584646.2
TCTCGTGTGGAGCGTGTTCTCAGACGCTCAAGAGCATTTCCAGGATATTTCAGTTCACTGCTCAGTCGTGTGCAAGAACTATGGACAGCAAGGGGATTTTGTCTCTCACCCTTCTACTCCTCTTGTCACAGAgtcctgcctccctctctttgaCAGTGAGCACCAGTGAGGCCAAAATGGAGGTCCACGAGAACACagacgCTGTGCTGTCCTGTCAGTTCAAGACAGAGAAGGAGACTAACCCTCGTATTGAGTGGAAGAAGAAAGGGAAGGACATCCACTTTGTTTATTTCGATGGAAAATTCACCGGATCCTTTGCAGGTCGGGCCAAGATCGAGGGCGCAACGGTGACACTGCATGCCGTTACCCAGAAGGACTCTGGGTTGTATCGCTGTGAGGTCAGCGCACCAGCAGACCACACAAACCTAGGAGAGGTCAATGTCACCCTCAACGTACTGGTGCCCCCCCACACCCCGTTCTGTGAGGTGCCCAGCTCAGTGCTGTCTGGGACAAGTGTAGAGCTCCACTGTAAGGACAAACTCAGTGTGCCCCCGTCTACCTTCCTCTGGTATAAAGACAACAAGGCCCTGAGCGCCACACACACCCCTGACATCGTCtatagcatggacactgacacgGGAACACTGAATATTAAGAGTGTGTCCAAGGCCGACTCAGGCCAATACCGCTGTGAAGTCTCCAATCGCGTGGGGGCGTCCAAAAGCTCTGTGGCCCATCACATGAAGGTCATAGAATATCCGTTGAGCATGACGACATTGATAGCCGGAGCTGTAGGCCTCTTCCTGCTCATCCTCATATGCTGCCTGGATGTGTGTCTCCCATTGACAGGGCTGCTGCAAAATGGtccacctcctccccccaccAGAAATGTGAGTGTGTTGCCATTccctgttgttgttgatcaggAACGGTAATTATTCCTTGTACTGGCAGTATTAACTTAGTTGAGCAGTGGTCTTGTTTTAAATTGGACTGTTCTTGGAGCAGTTGTTGACCACACCAGTGTATTGATAAGCCTGAGTTGTTGAGTGAGTTGGTAATAATAGTAACCAGTCTAGTTAACTGATGGATACGCCTTTCCCTTTCTGCAGCCCAAGAACTACAAACACACCCAGTCCTTCATGATCTGAGGGtatagcacgcacacacacacacacataaacacacacacacacac

Function

NR:

description
junctional adhesion molecule B-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021584649.2 False 1042 mRNA 0.52 9 73547199 73561315
XM_021584646.2 True 1198 mRNA 0.51 8 73547265 73561315

Neighbor

gene id symbol gene type direction distance location
st6gal2a st6gal2 coding downstream 42078 73338170 ~ 73505121 (-)
uxs1 uxs1 coding downstream 280589 73162516 ~ 73266610 (-)
fhl2a fhl2 coding downstream 507815 73025288 ~ 73039384 (-)
LOC110520539 mfsd9 coding downstream 665935 72870852 ~ 72881264 (-)
LOC110504714 LOC106586779 coding downstream 708746 72791304 ~ 72838453 (-)
grk1a grk1 coding upstream 30469 73591784 ~ 73597306 (-)
LOC110520555 LOC106586764 coding upstream 36127 73597442 ~ 73614530 (-)
LOC110520557 LOC106586760 coding upstream 81205 73642520 ~ 73651632 (-)
LOC110520558 LOC106586756 coding upstream 100681 73661996 ~ 73697362 (-)
zgc:92313 LOC106586754 coding upstream 178356 73739671 ~ 73759734 (-)
G295979 NA non-coding downstream 68643 73476854 ~ 73478556 (-)
G295865 NA non-coding downstream 329387 73216943 ~ 73217812 (-)
G295832 NA non-coding downstream 407416 73133474 ~ 73139783 (-)
G295823 NA non-coding downstream 424030 73120665 ~ 73123169 (-)
G295797 nck2 non-coding downstream 447893 73068748 ~ 73099306 (-)
G296010 NA non-coding upstream 9936 73571251 ~ 73571774 (-)
G296012 NA non-coding upstream 12335 73573650 ~ 73573923 (-)
G296039 NA non-coding upstream 66724 73628039 ~ 73628383 (-)
G296042 NA non-coding upstream 70344 73631659 ~ 73631961 (-)
G296052 NA non-coding upstream 98193 73659508 ~ 73660094 (-)
G294697 NA other downstream 770592 72775407 ~ 72776607 (-)
G294451 NA other downstream 971767 72571249 ~ 72575432 (-)
LOC110504660 LOC106582021 other downstream 1340401 72121974 ~ 72206818 (-)
G293984 NA other downstream 1643291 71903314 ~ 71903908 (-)
G296011 NA other upstream 10977 73572292 ~ 73572911 (-)
G296043 NA other upstream 70723 73632038 ~ 73633036 (-)
G296102 LOC106586753 other upstream 211839 73773154 ~ 73775299 (-)
G296100 LOC106586751 other upstream 247167 73808482 ~ 73809596 (-)
LOC110520572 cep97 other upstream 311658 73870489 ~ 73877576 (-)

Expression


Co-expression Network