grk1a (grk1)


Basic Information

Item Value
gene id grk1a
gene name grk1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 73591784 ~ 73597306 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597942.2
GCATTTTCCTCTGGGAAATCTGATGTGTTGACTTGCGCTCTAAAAAGCCTTGTTCACATTTGGTATTTTGATGTGACTCAAATCCTTTTTCCTGCAGTCaacagccaaaaagcacatggGATCAGATATTTCATGCCACATTTAAAACCACCTTTGTTGGTTTTTAGACAGTTTTggcatatcttgttgcttgctagctactctgttgacaattttgacaagaacatgtgttagttaactagcttgttaattgtttacaatCAAATTAGGGAATGTGCTGAAGGCTAGAGGGAGATATAAACATTTTGCTTTCACCTTTCTGATCCTTCCATATCTATGAAGGCCAGGGGCCATTCTGATGTTTCGTGAGGTGTCAATTTTAGACTCTGCgccttactccctccctcccttttctacTGTGCTGCTCCCTTGTGTCTTGTTCTTTAGATAACAGGTGCTGCTCTGGCCTCCATGACACAGTCTGAATACACCAGTCACAGATTGGGCTCTCACTCTCAGCCTGAGGTATTAGGGAGTTAGTGGATAAAGGCATTACTGTCTGAAAGGTGCTGAgccaggtgtgtgtgagagatacgGGTAAAGCGCTCGGGTCAGGAGGAGGATCTTGTGTCCTCTGTCCTGCTGCTGGCACGGCTCTCCTTTTCCTTTCTCTCCCGCTGTTCATCTTTCCTCTCATCATTCCTCTCTAATCCTCCCCTTTTACTgtttcactccctctttctcctctatcaCCTTTTATTCACACTTCAACATATTCTTCGTAATCTCTTTATCTCACACTATCCCTCCTTGCCCCCCGCTCGTCTTCACCATGCTCTCCCTCTGAGTGTCCTCGCTGTCGGCGacagcctctctccctccgttGCCATGGATTTGGGCAGCCTGACCACAGTGGTTGCCAACTCTGCCTACATAAGCGCCCGCGGAAGCTTCGATGGCTCCAACCCGGCAGCCTCGCGTGACAAGAAGTACCACGCCCGCCTCAAGCTGCCCCATATCACCGTGTGTGAGGGCCTCCAGGAAACCCTGGACCTAACCTTTCAGTCAGTCTGCGTGGAGCAGCCCATCGGCAAACGTCTGTTCCGCGAGTTCCTGGAGACGGCGCCCGAATACCACGGTCCTTGCCACTTGTGGCGGGACATCGAAGAGTACGACTTAGCCGAAGACACAGACCGGGCCCAGAAGGCATCTAGGATTGTCCAGCGTTACCTGGAATCCTCTGCTAAGCTCTACTGCCCCTTCCTGACCCCGGAGACCGTGACCCAGGTGAAGGAGGCACAGCAGGGGGCTGGGGACACCCTCTTTTCCCAGACACTGGTCTCGGTGCTGGGCTACCTCCAGGAAGTTCCCTACACCTTCTTCCTGGAGAGCATGTACCTGAAGAGGTTCCTGCAGTGGAAGTGGCTGGAGATGCAGCCCATGGACCAAGACTGGTTCCAGGACTTCCGTGTGCTTGGGAAGGGGGGTTTCGGAGAGGTGTCTGCCTGCCAGATGAAGGCCACGGGGAAACTGTACGCCTGCAAGAAGCTCAACAAGAAGAGGCTGAAGAAGAGGAAAGGCTATGAGGGGGCGATGGTGGAGAAGAGGATTCTTGCCAGGGTTCATAGTCGCTTCATCGTGTCACTGGCCTACGCTTTCCAGACCAAGGATGAGCTTTGCCTGGTTATGACCATCATGAATGGAGGAGACctgaagtacCACATCTATCTGGTGGATGAGAACAACCCAGGGTTTGAGGAGCCCAGAGCCTGTTTCTACGCAGCTCAGATCATCCAGGGCATGGAGCACCTGCACCAGAAGAGAATCATCTACAGAGACCTCAAACCTGAGAACGTGCTGCTGGACAATGAAGGTAACGTGCGTATCTCTGACCTGGGTCTGGCAGTGGAGCTGAAGGAAAACCAGACAAAGATCAAAGGCTATGCCGGAACTCCAGGGTTTATGGCCCCAGAGCTCCTGAAGGGGGAGAAGTATGACACCTCAGTGGACTATTTCACCCTAGGGGTCACATTGTTTGAGTTTATGGCCGCCAAGAACCCCTTCAGGGAACGCGGAGAGAAGGTTGAGAAGGAGGCACTAAAGGAGCGCATCATGACCGGGACAGTGGTCTACCCAGAGACATTCAGTGAGAACGCCAAGTCCATCTGCTCTGCGCTGCTGGAGAAACAGGTGGACAAGAGACTAGGTTTCAAGGACGGGACCTGTGACGAGATCAGGACACACCCCTTCTTCAGCGCCATCCACTGGACGAGACTGGATGCAGgCATCCTGCCCCCCCCGTTTGTCCCTGACTCCAAGGTGGTCTACGCCAAGGACCTGGATGACGTGGGGGAGTTCTCCTCGGTGAAGGGAGTGGGGCTGGACGACCCCGACCGCGTGTTCTTTGACGAGTTCTCCTCTGGGAACATTGCCATCCCCTGGCAGGAGGAGATGATTGAGACGGGGATCTATGGTGAGCTCAACGTGTGGGGACCCGCAGGCACCATACCCAACGACCTGCGCAGGGAGTCCATCTTGGAACAGCCCAAGTCATCCACCTGCTGCTTGGCGTGATTGTCTCTTTGGAAACGGAGGACGAAGAAGGGAGCTCAGACGTTCCGGATCAGACCAACCGTAGCTCTTTGAGGTTGTGTTTAGTACACGCGGAAGTGCTGCCAACTGAATATTTTTTTGAGCGCTTTACGTTTAGAGTAGAACAACGAGAGAAACTGTAAAAAAGAAGAAACAAACATACACCTCAAAGGGCATTGATGGGAAAACACCTGGACCCAGACAAACACTCAAGACAGTCCAGAACAGCAAATCAGGTTCTACACAATAACGTTGCCATGGAGATGGAACTCCTGAGTGGCATGGCATTCTGACTGTTCATTGGTTGAGATTGAGAGAGTGTTTCGCTGCTCTTAGAGTGAAACTGTTAGATGGACTTTGGACCTTTGTACTTCAGTTGCGCCCAGCAATAGATATTCTGTATTCTCAAAGCATACTGACAGATCATTTAGCAGCATCAATATatacgtgtgtgtgagtgagagaaaacGAGATGCTTTCTGATTCTGCTCACTATAACACTAGTGAAATGTGCTAAGAAACATGAAATCTTGCAGTTCTCGAAATATGTCAATATACACTGAATCTACcaaacatcaggaacaccttcccaatatttagttgcaccccccttgccctcagaacagccccaATTGAtcgggcatgaactctacaaggtgtcacagggatccacagggatgctggcccatgttgactccaatgcttctcacatttgtgtcaagttggctggatgtcctttggatggagGACCATTCTTGTTACATACGGGAAAAtgctgagcgtgaaaaacccagcagcgttgcggttcttgacaccaactggtgcgcctggcacatactaccataccctgttcaaaggcacttcaattttttgtcttgcccattcaccctctgaatggcacacatacacaatccttgtCTCAGTTGTCTCTAGgcgtaaaaatccttctttaacctgtctcctccccttcctctacactgatttgaagtggatttaacaggtaacATTAATAAGGGAAAGAGCACTAgttaatgttttgtgtactcagtGTAAGAGCTTACCTTCTTGAACTAGTCTGTTTTCATGTATAGTGGAAAAGGGTTTGGTTACCATTGTCATAAATGCAGGTGATACTGTCTCTAGTAGATgtctatgtgtatatatagtaacTTTCAGAATATCTGTGTTGATGCCAATGCAGACTATGCGTAAGTAGCGAGAAATGAACACATTTTTCACACTGTAGTGCAAAGCACATTTTATTTACAAAACATTTGTCAATGTATCAAATGTATGAAAAAACATTGGTAGATAAAATTGCATTTTGAAAAGTCA

Function

symbol description
grk1 Enables rhodopsin kinase activity. Involved in protein autophosphorylation and regulation of rhodopsin mediated signaling pathway. Predicted to be located in photoreceptor outer segment. Predicted to be active in cytoplasm. Implicated in Oguchi disease-2 and night blindness.

NR:

description
rhodopsin kinase

GO:

id name namespace
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004703 G protein-coupled receptor kinase activity molecular_function

KEGG:

id description
K00909 GRK1_7; rhodopsin kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597942.2 True 3927 mRNA 0.49 7 73591784 73597306

Neighbor

gene id symbol gene type direction distance location
LOC110505436 LOC106581976 coding downstream 30469 73547199 ~ 73561315 (-)
st6gal2a st6gal2 coding downstream 86663 73338170 ~ 73505121 (-)
uxs1 uxs1 coding downstream 325174 73162516 ~ 73266610 (-)
fhl2a fhl2 coding downstream 552400 73025288 ~ 73039384 (-)
LOC110520539 mfsd9 coding downstream 710520 72870852 ~ 72881264 (-)
LOC110520555 LOC106586764 coding upstream 136 73597442 ~ 73614530 (-)
LOC110520557 LOC106586760 coding upstream 45214 73642520 ~ 73651632 (-)
LOC110520558 LOC106586756 coding upstream 64690 73661996 ~ 73697362 (-)
zgc:92313 LOC106586754 coding upstream 142365 73739671 ~ 73759734 (-)
LOC110520571 LOC106586749 coding upstream 254778 73852084 ~ 73868375 (-)
G296012 NA non-coding downstream 17861 73573650 ~ 73573923 (-)
G296010 NA non-coding downstream 20010 73571251 ~ 73571774 (-)
G295979 NA non-coding downstream 113228 73476854 ~ 73478556 (-)
G295865 NA non-coding downstream 373972 73216943 ~ 73217812 (-)
G295832 NA non-coding downstream 452001 73133474 ~ 73139783 (-)
G296039 NA non-coding upstream 30733 73628039 ~ 73628383 (-)
G296042 NA non-coding upstream 34353 73631659 ~ 73631961 (-)
G296052 NA non-coding upstream 62202 73659508 ~ 73660094 (-)
G296055 NA non-coding upstream 90352 73687658 ~ 73688154 (-)
G296011 NA other downstream 18873 73572292 ~ 73572911 (-)
G294697 NA other downstream 815177 72775407 ~ 72776607 (-)
G294451 NA other downstream 1016352 72571249 ~ 72575432 (-)
LOC110504660 LOC106582021 other downstream 1384986 72121974 ~ 72206818 (-)
G296043 NA other upstream 34732 73632038 ~ 73633036 (-)
G296102 LOC106586753 other upstream 175848 73773154 ~ 73775299 (-)
G296100 LOC106586751 other upstream 211176 73808482 ~ 73809596 (-)
LOC110520572 cep97 other upstream 275667 73870489 ~ 73877576 (-)
G296166 LOC106581959 other upstream 280413 73877719 ~ 73880371 (-)

Expression


Co-expression Network