LOC110520557 (LOC106586760)


Basic Information

Item Value
gene id LOC110520557
gene name LOC106586760
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 73642520 ~ 73651632 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036975124.1
GGAATCATCCGTGGTATGTGACGATCCAGACACTCAACGAAGACCAATTTAATCAGCGCCAACTAAaccaaaaaagagaaaaaaaaacactgaagGAAAAGTGCACATTTCTGAAGATTTGTTTCGTGAGGATTCTAGCTTGCGGCAGCAGAGAGAGCACAAGCCGTGAGCTTACGTTGTTGCAAGTAAAGCTCGCTTACTGTCCTTCGTTCCTGTCGCTGGACCGTGTGCATGTTGTGATTCGCCCCTTGCCTTGGCAAACAACTTAACAAAAATATGACACAACAACATAGCCGCAAGCAACCTTTGTCCATTGCATTCATCGCGCTTTTAGCGGTCACGTTGCATCAGACCTTTGCTGCCACTGACGCCCCGCCCACGGCTGCCCCTCAAACCACGGCTCCGCCTCCTGCACCCCCGGCTCGGCCCGAGAGAGGCAACTACACTGTAACCAACGGCAATGGGACCGCCTGTCTGATGGCCCGCATGGGACTGCAGCTCAATGTCAGCTTCAGCTCTGCCTCTCTCAATAAGACTGTGCTAGAGGTGGTGAACCTGCAGCCCAACCTGACTAAGAGCTCAGGGTCATGTGACTTGGACAGCGCCACCCTACTGCTGAAGGCTGACGAGAGGGCAACCAGTCTCACCCTCGTCTTCTCCCTGAATGCCACGTCCAGTAAGTACCACCTCAGTGGAGTGACCCTGTTGGCAGCCTGGCCGGACATGCATGTGCCCTTCTCAGCCGGTAACCGTAGTCTGGACTACCTGCGTGGTACCCTGGGGCGTAGTTACATGTGTCGTGAGGAGCAGACTCTGGCTGTGACTGTCAACTTCTCTCTCAACACCTTCCAGCTGCAGGTGCAGCCCTTCGGCCTCAAAGGGGACCAGTTTGGAGCAGCGGAGGAGTGTCAGCTGGATGAGGATGACATGTTGATCCCCATCATCGTGGGCGCTGCGCTGGCTGGCCTGGTCCTCGTCGTTCTCGTGGCCTACCTCATCGGCAGGAAGAGGAGCCACGCTGGCTATCAGACCATCTAAAATCACTTCCTAtcaactgacccccccccccccccccccccccaagagccAGAGAGCGCAAGCCCGCCCCATCTCACCCTCCAGCTACTAACCATCACCTGGATTGACTGAACCTCACTGCGACCCTTAAACTGAACTTTCCCCAATTCAGTTGGTCTCATCTTAGAATCCTTGCtgccccatcctcccctctgaACTCTCATTAGCCCCGCGTTGGGTATCCATGGGGTTGATATGCGCTTTCAGGACTTGACTACTCCTTTGtatgaacaaaaaaaaaagtgggaATCTGCTGAGATTTGTATTTACATAACGAAACACTCTTGACAGTAGAGCTTTTCATGGATCCACCTATACTCGAGACCTGATCCAGAATTCGAAATAATGTCACGGGTTGAATCTGAACAGATTATCACGGGTAGGCCTACATGTAACTTTAATTTACCTGTCCGGAAGAGCCCGTACAGATCCAAACGCGACTGCTACAGTAGAGAGAAATGTAGtaatttatgctgctgctcttTATGCTACTGCCACGAGAGTGGCGTTTGTTGTTGTTGGCCAGTCATAAGTTAACAAAGCTACAATAGGCTAGTCATAGAGCCTTCCTGTGTggcaaaagttaggagatatctaataaATATAATTACAAGTTAAAGGAGAGGGATGGGCTACAACGACAATAGTCTGGAGTTGTAAGTGTAGGATGAGAAAGCGTAAGCACTGCAGCCTCAGTTAGCCTAGCTCGCTAATATCAGCTAGCTTAATTAGCTTCTCCCGGTTTGATACAGTCAAGCCCGGTACGACGTAATCATATTTGATAAATCATTTAGCTATGGCAGCTATTGGTTGGTTGCTGTTATCTCTCCCTCACTCGCTCAGTACGGCCCGTCCCCCACCTGCTGGAGCGGCACCTCCCTCACGCGTTTTATCGGCTTTAAAAAAGTGTTTTCTGTTGCTTCCCTCACTCGGATCGGGGCTGGATctgaccaggtctatacggaacgggTCTAGCTGTCTCTGAGTTCGTTCGGAATGCGTCTCTGACTAAattcaaaaaatgtatttatacatATCGGGTTCGAGTAGGGAAAGCCCAGGTCTATTTTGGAACAGGTCCAGCTTTTTGGACCCATGAAGACCTCTACTTGAGAGACACCATCACTCAACATGgcagggggtggggtggagtttTCATATAACCATATGCTGAATAATAATCCACACTCTGCTATTTGTAGCCTAGGGTTTCATATCATGCATTACATTTACTGGTGTTTAATAACAGGATTTCTGAGGGATTGTTTGTGTACAACCATTGCTGCTGCCTTTTAATGGCTACTTCTCTGTTTTGGTTGGTGGCCATTTTGTCAGTCACAACGTAATAGGAGGCCGTTGTTACTCCTGTGTAAAGGGAATATAATGACTGTCGCTGGTTGCTCCAACCAAACTTGTTGCTTAAGGTTTTCAACATCATTAAACATAATGAATTTTTAAAATTCTGAATATAATATGGAGTTGATGCAAGTCTCCCCTAACCTGAGTTTGAGGGTCAGATATTTTTGCATCCACCTAATGTTTAAGGCTATGATTTGGGTCTGggaaatctgatcctagatctgtggttaggggcTAAGCTAGGTACCAGCGGCAGTTTTCAGAATGGTGTTTCTTCATCCATTTCTTAGGGGTCCCCTAGTTGGACATTTTTTTTGTGCACCTTCTTGTGTTCCTCTTGGACTGGGTTGAGGAACAAGGGTAAAGGTCATTTGATGGTGAAGCAGTTGAGGTCTGCATACCACTGCTTATAGGTAAATGTATTAACCGGCGCCTCATGGTCAATCCGACATCTGCTTTGGCTgtgcagcatttacggtgatacGGCCTCGGCAGAAGTCAGGACATTCATACTTGTTGTGCTTCCTGAAGCAAAGCAGAGCTGTTAAGGAAGTGACACGCTATACAGAGTCCTCCCCATTTATTACAACATTTTGAGAGGCATGTGCttgatttggcctctgcatgcctcgAGGCTCCGCAATTGGTTCACACCCTCCATACGAACAGActaagcataaattggctttaaGACGGGGTGATTTTTCTTTTCTGGGGGGGTATACTGATGGTACGTCCAGTGATACACTAAGGGGAGGGTTGTTACAGTTGAATTTTATGGTGCGTACAAATGGCTGAACACTAACTCAAAATGCACCTGTGTAACTTGGGACACTTTTTAGTGAATAGTCACATTTATTAGGTGGTTTTCTCAAGTTACAATTCCAGATATTATAGTTTAAATTGTTCTGTTGGAGTTACTGCCAAAAGAACAGCAACATTTTAGGGAGGACATCATTTCTCCACCCCAAAATAATGTTAAGCCAAATGGAATCTGTGCCTCCCCACTTACAAGAAGGATGGGATCTATGCTAATGTTCTAGATTTGCACACACTCTAatctgtctcaaatggcaccctattccccatgtagtgcataTCTTAGTTGGGTGTCATTAGTCATAGCCTTTTGTCTCTACACGGCGTTACCATAGAACAATGAGCCatatttcaccagatgtataaatggctgtggtctatcttggtttagttataaagATATTTGGCGTTCTGAGATCTTGCCTTGCCTGTTGAAAGATCAGAGGATGCATTATTTGGAGTAATGAAACTGCATTTTTATTCCACCCCTCTTCTAGAAGTGTTAACATCCATAGGTTGAATACGGCTTTAAGAATGTTTTAATTGTTTTCTTAAGTGTAGtggtcaataaaataaaaaaataagctgAA

Function

NR:

description
lysosome-associated membrane glycoprotein 1-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036975124.1 True 3845 mRNA 0.46 6 73642520 73651632

Neighbor

gene id symbol gene type direction distance location
LOC110520555 LOC106586764 coding downstream 27990 73597442 ~ 73614530 (-)
grk1a grk1 coding downstream 45214 73591784 ~ 73597306 (-)
LOC110505436 LOC106581976 coding downstream 81205 73547199 ~ 73561315 (-)
st6gal2a st6gal2 coding downstream 137399 73338170 ~ 73505121 (-)
uxs1 uxs1 coding downstream 375910 73162516 ~ 73266610 (-)
LOC110520558 LOC106586756 coding upstream 10364 73661996 ~ 73697362 (-)
zgc:92313 LOC106586754 coding upstream 88039 73739671 ~ 73759734 (-)
LOC110520571 LOC106586749 coding upstream 200452 73852084 ~ 73868375 (-)
LOC110520572 cep97 coding upstream 218857 73870489 ~ 73877576 (-)
LOC110520575 LOC106586746 coding upstream 231909 73883541 ~ 73889222 (-)
G296042 NA non-coding downstream 10559 73631659 ~ 73631961 (-)
G296039 NA non-coding downstream 14137 73628039 ~ 73628383 (-)
G296012 NA non-coding downstream 68597 73573650 ~ 73573923 (-)
G296010 NA non-coding downstream 70746 73571251 ~ 73571774 (-)
G295979 NA non-coding downstream 163964 73476854 ~ 73478556 (-)
G296052 NA non-coding upstream 7876 73659508 ~ 73660094 (-)
G296055 NA non-coding upstream 36026 73687658 ~ 73688154 (-)
G296057 NA non-coding upstream 46081 73697713 ~ 73699561 (-)
G296068 NA non-coding upstream 64673 73716305 ~ 73716793 (-)
G296043 NA other downstream 9484 73632038 ~ 73633036 (-)
G296011 NA other downstream 69609 73572292 ~ 73572911 (-)
LOC110520539 mfsd9 other downstream 761666 72870852 ~ 72881264 (-)
G294697 NA other downstream 865913 72775407 ~ 72776607 (-)
G294451 NA other downstream 1067088 72571249 ~ 72575432 (-)
G296102 LOC106586753 other upstream 121522 73773154 ~ 73775299 (-)
G296100 LOC106586751 other upstream 156850 73808482 ~ 73809596 (-)
G296166 LOC106581959 other upstream 226087 73877719 ~ 73880371 (-)
LOC110520576 NA other upstream 318850 73960416 ~ 73973401 (-)

Expression


Co-expression Network