LOC110520571 (LOC106586749)


Basic Information

Item Value
gene id LOC110520571
gene name LOC106586749
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 73852084 ~ 73868375 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597956.2
AATCTTATTAAGGTGACGTTCTATCATATCTACAGCACTGTTTGGGGTAACTGCAACTCTCCGGAAGACGATGTTGTCTTTCATCAAAAATGTAAACGGATGAATCTCGCTCTGAAATCTGACAGATTCGTAAAACGACACAATGAGCTGATACGCGCAGTGGTGAACATGAATATGATTGGTATAATCACAGCAGATGGTATGTTTGGCAGAGCCGCACAAAGGCACATCGTGTGACAGTGAGATCATCTCTAGCAACGCAACTTTCTGTTTCAACTAAGGGGACTGGTAGTGGCATGACACCGTTGCCATGGTGACATCAGACCGTGAGACTGGGCCTGATCATGGGAGGCAGAAAGGAGGCACTGTTTGGAAGAACCTGTCCAAATACACCCCTATCTTCTTTTTTCTGGCCCTGTCTGGAATCATCTTCCTGTTGCGCAACATTCACACTCTTGagAAGCTCAACTGCCAAACAGTGTCGACACTCTACCAGTTCCAAAGCAGCATTCATTCAGCCTTCACCCCAGAGGAACAACCTCCTGTGGATCACAACCGGAGCTACTGTGGCCACCTGGGCCTGGAGCCCTCAGCCGAGGAGGCTCTGGAGCAGCGTTACCTCCTGGAGTCCATCGCGTGGCCAGAGCCTCAGCCTCGGCTGACGCCTAGACCCCTGCGGCAGACCAGCGACCCTGCACACAGCCTGTTTGCAATCCTGCCAGGAGGGGGCGGGAGAGAGTGGCATGTGGGGGATCAGCTAGAGGCGCTAGTCCATATGCATGACTTCCAGGGGCGTCCCAAGCGTCACGGTGGGGACTTCCTGCTGGCCCGGCTGCATTCCCCAGAGTTGGGGGCGGGTGTTGCAGGACAGGTGCTGGACCACCGGAATGGGCTCTACTCAGCCGTGTTCCCGTTACTATGGGAGGGGTCTGTACGGGTAGAGGTGACACTAGTCCATCCTAGTGAGGCAGTTGCTGTGCTGCGTCGGTTACGAGAGGAACATCCCGACCGTGTCTTCTTCAAGAGTCTGTTCCGCTCTGGATTCCTGTCTGAGACCACCGTGTGCAACCTGTGCCTGCCAACCACCCGTCAGCCGCTGTGCAATTATACGGACCCTCACACAGGTGAACCATGGTACTGCTACAAGCCCAAACTGCTCAGCTGTGACACGCGGATCAACCACGCCAAAGGAGGCTACCAAAAACACCTGCTCACCAACAAAGAGTCACTGCTCTTCCAGAGTGGTGTAAACATCAAAGTCCGTGTTCATGCTTCCGGGTCTGACAGTGTCATTGTGCAGCCTGAGAAGAAAGacaaaccagagagggagagcagcagtgtgagaGCGGAGCCTATCAGGGTCACTCCATCTGGGTATTACTTCCAAGGGTCATGGCGAGCGCTGGGTGGTGTCGCAATGCATCAGTTTAACGACTCTTCTGCCATTACTCAGTGTCTGAAGGGCAAGGTGGTGTACATGTATGGAGATTCCACTGCTAGACAGTGGTTTGAGTACCTCAATGCCTTTGTCCCAGAGCTGAAGGAGTTCAACCTTCACAGTCCTAGGAATGTGGGGCCTTTCATGGCAGTGGACAGCACCCACAACATCCTGCTGAGATACCGCTGTCACGGTCCTCCAATACGCTTCTCCACTGTCATTGCCAGTGAGATGCGCTATGTAGCTAACGAGCTGGACGGCCTGGCGGGAGGCCCTGATACCGTGGTGGTCCTCAGCGTTTGGGCCCATTTTAGCACCTTCCCTGTAGAGGTCTACATACGCAGGCTACGCCACATTCGACGGGCGGTGATGCGGCTTCAGGACCGGGCTCCGGGGACCCTGATAGTGGTGCGTTCAGCCAACCTCCAAGCCCTGGACCCAGAGGTGAGCCTGTACAATAGTGACTGGTTCTCAATACAGCTGGACGGTGTGCTCAGGGCCATGTTTAGGGGTCTGGATGTCTTGCTGGTCGATGCCTGGGAGATGACCCTTGCTCACCACCTCCCCCATGCTCTCCACCCGCCTCCAGTCATTGTCAAGAACATGATTGACACTATCCTCTCTTACGTATGCCCAGAGAAGAGCTAGCCCGAGAAAGGAAAAGAGTATGGAAGATTACAAATTTGTGTGAGATGGGGAGTGTGGTTATGTTTACAAGAGTTACTTATAGTGTAATCACAAAGCTCACCTGTTTACTGCGAGCATGGCCTGATGTAGCCTAAGCCCTATCTGCTGTGTACCTGCTTCCTGTATATGGGATCCGCTGTTGTGAAGTGACCTAGTGTTTTTATCAACCATCTCACAGTCACAAATAAAccaggagagatggggagataaaCAACGGGACTGATTGAATCAGTCAACTATGAACAGATTACTGACTTTGACCCCACCTGCTGTATTTAAAGTTGAATGGCCAACAGTTCAAACGGTTCTTGTTTCAAAGGATTATTTTAAGAAATGTGTGTGAAAAGTTTTATGCAATAGTTTCTGACATTCAGTGTTTTGTTTTATGGGAAACAGCCTTGTTATTGAATTGTGACTCAcagattgttaaaaaaaaaaaaaaaactacagatTTCAACTAATTCTGTTCAATACACTTTTGCAAAACTTGAATGGAATATcggctgccataaagtgcaataaGTATATGTAGGCTACTGCAGTGCAGTAGGGGATTTTGAGAGTGGGAAATGCAGTAAAACAAATGCATGGAAAATGACACATTTGCCAAATCCTGTACTTTAGTCTTGCATTAATGATGTTCTCACTCTAAATATCAAGTATGTTTGGTTATACACAAACTGGAGCAAAGTTTAGAAGGTATTTTGACAAAAGTACATGTGAGGAAAATAATGGTTGCAAACCTCAATGTGAATCCAGCTCTTGTCATGTCAAATAAATCAGTTTGGTTTAGTGTGGGCCTCTGGGAAATGCCCAAGGCATGTCGCCGCAATTTAGCCTACAACTTAACAGATGAATATTTGTTAACTGAGTTCTGTACCAAATCATGTGCTTTCCTATGTATTCCATGTCCAAGGATGTTCAGAAACGTAACCCTTGAGGACtttgtctgctggtttttgtcATCCATTAAGAAGTTTACAGGCCTGAATCAGATGGTGATGGAAACGTTCTAGGTCATCAACCAGCAGACAGCCTTCCTTCAGGACTGGCTTTATTCTTCTTATTACGTGTTATTTTTCAAGTACTTCTGCAACAGTTTACATCAAAATGTGACGTTATTTAAATCTAGGAATAACTTTTATCATGTAACTGTTTACCCTTTTAAGACTCTTGTTAGGCAGTCTCAAAGTGATGCCATTTTGTAGCTAACAGTTACAGCAGTATTATTGCCTATGCCATACACCACAGCTGGAATGCTTTAACATGTTACCGTTTGCCAAGCTTCGCTATTGCCAAGTGTTACCTCACTTTCTACCAGTTACCATAACAGTGTTAACTTGCCACAATTCAAATATATCTCCCATTGAACAATTGCAATAAA
>XM_021597957.2
TCACCCGATGTGCCTCGTTGCCTTTTCTGTGGGACAATTAAATAAATATAACGGGACCGTTATACGGGATCACTTTCTGGGTCCGTCTGTGAAAGCACTCATTCTGCCTTTTCACTGATGCCCCATGGTGACAGTATAACCCAGATCCGCAGGGGACTGGTAGTGGCATGACACCGTTGCCATGGTGACATCAGACCGTGAGACTGGGCCTGATCATGGGAGGCAGAAAGGAGGCACTGTTTGGAAGAACCTGTCCAAATACACCCCTATCTTCTTTTTTCTGGCCCTGTCTGGAATCATCTTCCTGTTGCGCAACATTCACACTCTTGagAAGCTCAACTGCCAAACAGTGTCGACACTCTACCAGTTCCAAAGCAGCATTCATTCAGCCTTCACCCCAGAGGAACAACCTCCTGTGGATCACAACCGGAGCTACTGTGGCCACCTGGGCCTGGAGCCCTCAGCCGAGGAGGCTCTGGAGCAGCGTTACCTCCTGGAGTCCATCGCGTGGCCAGAGCCTCAGCCTCGGCTGACGCCTAGACCCCTGCGGCAGACCAGCGACCCTGCACACAGCCTGTTTGCAATCCTGCCAGGAGGGGGCGGGAGAGAGTGGCATGTGGGGGATCAGCTAGAGGCGCTAGTCCATATGCATGACTTCCAGGGGCGTCCCAAGCGTCACGGTGGGGACTTCCTGCTGGCCCGGCTGCATTCCCCAGAGTTGGGGGCGGGTGTTGCAGGACAGGTGCTGGACCACCGGAATGGGCTCTACTCAGCCGTGTTCCCGTTACTATGGGAGGGGTCTGTACGGGTAGAGGTGACACTAGTCCATCCTAGTGAGGCAGTTGCTGTGCTGCGTCGGTTACGAGAGGAACATCCCGACCGTGTCTTCTTCAAGAGTCTGTTCCGCTCTGGATTCCTGTCTGAGACCACCGTGTGCAACCTGTGCCTGCCAACCACCCGTCAGCCGCTGTGCAATTATACGGACCCTCACACAGGTGAACCATGGTACTGCTACAAGCCCAAACTGCTCAGCTGTGACACGCGGATCAACCACGCCAAAGGAGGCTACCAAAAACACCTGCTCACCAACAAAGAGTCACTGCTCTTCCAGAGTGGTGTAAACATCAAAGTCCGTGTTCATGCTTCCGGGTCTGACAGTGTCATTGTGCAGCCTGAGAAGAAAGacaaaccagagagggagagcagcagtgtgagaGCGGAGCCTATCAGGGTCACTCCATCTGGGTATTACTTCCAAGGGTCATGGCGAGCGCTGGGTGGTGTCGCAATGCATCAGTTTAACGACTCTTCTGCCATTACTCAGTGTCTGAAGGGCAAGGTGGTGTACATGTATGGAGATTCCACTGCTAGACAGTGGTTTGAGTACCTCAATGCCTTTGTCCCAGAGCTGAAGGAGTTCAACCTTCACAGTCCTAGGAATGTGGGGCCTTTCATGGCAGTGGACAGCACCCACAACATCCTGCTGAGATACCGCTGTCACGGTCCTCCAATACGCTTCTCCACTGTCATTGCCAGTGAGATGCGCTATGTAGCTAACGAGCTGGACGGCCTGGCGGGAGGCCCTGATACCGTGGTGGTCCTCAGCGTTTGGGCCCATTTTAGCACCTTCCCTGTAGAGGTCTACATACGCAGGCTACGCCACATTCGACGGGCGGTGATGCGGCTTCAGGACCGGGCTCCGGGGACCCTGATAGTGGTGCGTTCAGCCAACCTCCAAGCCCTGGACCCAGAGGTGAGCCTGTACAATAGTGACTGGTTCTCAATACAGCTGGACGGTGTGCTCAGGGCCATGTTTAGGGGTCTGGATGTCTTGCTGGTCGATGCCTGGGAGATGACCCTTGCTCACCACCTCCCCCATGCTCTCCACCCGCCTCCAGTCATTGTCAAGAACATGATTGACACTATCCTCTCTTACGTATGCCCAGAGAAGAGCTAGCCCGAGAAAGGAAAAGAGTATGGAAGATTACAAATTTGTGTGAGATGGGGAGTGTGGTTATGTTTACAAGAGTTACTTATAGTGTAATCACAAAGCTCACCTGTTTACTGCGAGCATGGCCTGATGTAGCCTAAGCCCTATCTGCTGTGTACCTGCTTCCTGTATATGGGATCCGCTGTTGTGAAGTGACCTAGTGTTTTTATCAACCATCTCACAGTCACAAATAAAccaggagagatggggagataaaCAACGGGACTGATTGAATCAGTCAACTATGAACAGATTACTGACTTTGACCCCACCTGCTGTATTTAAAGTTGAATGGCCAACAGTTCAAACGGTTCTTGTTTCAAAGGATTATTTTAAGAAATGTGTGTGAAAAGTTTTATGCAATAGTTTCTGACATTCAGTGTTTTGTTTTATGGGAAACAGCCTTGTTATTGAATTGTGACTCAcagattgttaaaaaaaaaaaaaaaactacagatTTCAACTAATTCTGTTCAATACACTTTTGCAAAACTTGAATGGAATATcggctgccataaagtgcaataaGTATATGTAGGCTACTGCAGTGCAGTAGGGGATTTTGAGAGTGGGAAATGCAGTAAAACAAATGCATGGAAAATGACACATTTGCCAAATCCTGTACTTTAGTCTTGCATTAATGATGTTCTCACTCTAAATATCAAGTATGTTTGGTTATACACAAACTGGAGCAAAGTTTAGAAGGTATTTTGACAAAAGTACATGTGAGGAAAATAATGGTTGCAAACCTCAATGTGAATCCAGCTCTTGTCATGTCAAATAAATCAGTTTGGTTTAGTGTGGGCCTCTGGGAAATGCCCAAGGCATGTCGCCGCAATTTAGCCTACAACTTAACAGATGAATATTTGTTAACTGAGTTCTGTACCAAATCATGTGCTTTCCTATGTATTCCATGTCCAAGGATGTTCAGAAACGTAACCCTTGAGGACtttgtctgctggtttttgtcATCCATTAAGAAGTTTACAGGCCTGAATCAGATGGTGATGGAAACGTTCTAGGTCATCAACCAGCAGACAGCCTTCCTTCAGGACTGGCTTTATTCTTCTTATTACGTGTTATTTTTCAAGTACTTCTGCAACAGTTTACATCAAAATGTGACGTTATTTAAATCTAGGAATAACTTTTATCATGTAACTGTTTACCCTTTTAAGACTCTTGTTAGGCAGTCTCAAAGTGATGCCATTTTGTAGCTAACAGTTACAGCAGTATTATTGCCTATGCCATACACCACAGCTGGAATGCTTTAACATGTTACCGTTTGCCAAGCTTCGCTATTGCCAAGTGTTACCTCACTTTCTACCAGTTACCATAACAGTGTTAACTTGCCACAATTCAAATATATCTCCCATTGAACAATTGCAATAAA

Function

NR:

description
NXPE family member 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597956.2 False 3509 mRNA 0.48 6 73852084 73867970
XM_021597957.2 True 3380 mRNA 0.48 6 73852084 73868375

Neighbor

gene id symbol gene type direction distance location
zgc:92313 LOC106586754 coding downstream 92350 73739671 ~ 73759734 (-)
LOC110520558 LOC106586756 coding downstream 154722 73661996 ~ 73697362 (-)
LOC110520557 LOC106586760 coding downstream 200452 73642520 ~ 73651632 (-)
LOC110520555 LOC106586764 coding downstream 237554 73597442 ~ 73614530 (-)
grk1a grk1 coding downstream 254778 73591784 ~ 73597306 (-)
LOC110520572 cep97 coding upstream 2114 73870489 ~ 73877576 (-)
LOC110520575 LOC106586746 coding upstream 15166 73883541 ~ 73889222 (-)
LOC110520576 NA coding upstream 92041 73960416 ~ 73973401 (-)
LOC118964355 NA coding upstream 105077 73973452 ~ 73973615 (-)
LOC118964353 NA coding upstream 105955 73974330 ~ 73974439 (-)
G296141 NA non-coding downstream 6106 73845287 ~ 73845978 (-)
G296129 NA non-coding downstream 27420 73824192 ~ 73824664 (-)
G296120 LOC106586750 non-coding downstream 33615 73817522 ~ 73818469 (-)
G296117 NA non-coding downstream 38954 73811954 ~ 73813130 (-)
G296101 NA non-coding downstream 41648 73770621 ~ 73810436 (-)
G296164 NA non-coding upstream 3850 73872225 ~ 73872570 (-)
G296165 NA non-coding upstream 4359 73872734 ~ 73872956 (-)
G296193 NA non-coding upstream 60486 73928861 ~ 73929759 (-)
G296144 NA non-coding upstream 79696 73948071 ~ 73949708 (-)
G296100 LOC106586751 other downstream 42488 73808482 ~ 73809596 (-)
G296102 LOC106586753 other downstream 76785 73773154 ~ 73775299 (-)
G296043 NA other downstream 219048 73632038 ~ 73633036 (-)
G296011 NA other downstream 279173 73572292 ~ 73572911 (-)
LOC110520539 mfsd9 other downstream 971230 72870852 ~ 72881264 (-)
G296166 LOC106581959 other upstream 9344 73877719 ~ 73880371 (-)
G296315 NA other upstream 370812 74239187 ~ 74239795 (-)
G298065 NA other upstream 2092172 75960547 ~ 75963074 (-)

Expression


Co-expression Network