LOC110520576


Basic Information

Item Value
gene id LOC110520576
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 73960416 ~ 73973401 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051379.1
TATTTGTCAGGTGTCATTGTAATTGTCTGTTTTTTctcacaaggctgaaatatgtgccctcgctttgaaatgtTACCAAGGtttgtttgtatttcatccaaacTATCTGTGTTAAAAAGTGATGGCTACAGCATATGtcatttcttccactttttgagtgacccAAAGTTCAAGCTGCTTGTCTATTTGGTGAAAATGCAATGTCTGTTTATCAGACTCACTTTGACTTTAAATGGCGCACCAAGACTTGTTCCTTTGCTTACGGCCATACCGGTCTGAGTgatcacttcctgtttggaaagTGAGACAGGTGTTGGTAATTAAgtcgtgagtgagtgagtgagtgagtgagtgagcgagtgagtgagtgtttgttTGCTTGAGAGCTTTTTTGGTTATTTTCAACGTTTTTTGAAGTATAATTTAGATTTTTGCATTTGAAAAAGTTTAAGTTTGATTCGTTTTTCCCCCTTTGCAGTTTTGCTGCTTGGGCGAAAGTTTTTGGcctctttttttttgtttaataTGACGGACAACATGGCAATGACTAACGGAATGGACAAGGACAAAGAAAATGCTCAACGTAAGAAACATGGAGATGAAGGAGGAATGAAATATGGCAAAGATTTTACAGTGGCAGTGGAGTTGATGGGAGAAGATACATTTACAACGATGGAATTACTACGTGCGATTAAAGAGGTGTGTGGAGAGGTGGTGGGATGTAGAGTAAAAGGAGAAAGAAAGTACGAGGTCACGATGAGAAATGGAAAAGGAAAAGAGCACTTAATGGATGGCTTTATGACTAAAGAAACAAGAATAATGGCATTAGACATGGTTTCCAATTAACTAATAGTCTCTTTCATGAATCTGCTTGTATACATGGAAGAGAGTGCTATATTGGCCAAGCTATGTAGCTGGGGTGTATCAGCAGTCTCTGAAATCAGGAGGAGAGTTTGGCCAGGGACGGATATAGCAGATTGCACGAGATACTGCAAAGTGAAATTCACTGATACTGTGAAATCATTACCGTACTCTACAAAGTTTGACACACTTGAAGGTGGAGAGTACTTTAGAGTTATACACGATAAGCAGGTCAGAGTTTGTAGGCTTTGTATTCAGCCTTGAAGGACTGCCCTGAATTCAGATGTTATAAGTGCGGGAAGCAAGGGCATTATGCAAGAAAATGTGAAGGTGGAAAGGAAAGGGCATTTTGCAAAGGATGTCGGATGAGAACTAACGAGTGCAACTGCGGAGAGGTTGTGAATGAGGAGGGGAGCCAGGACCTTTTTGTGGAAGCTGATGTATCACCACGAGCAGAAGAAGACGATGGAGGAGAGGACGTGGTGGAGGGTGGAGAGACGGAGAAAAGAAGATGTGAGAAGATGGAACAGGAGACTCATTAAATAGGGAGCAGTATGGATTCAGAAATAAGAAGAGGGAGTTTTCAGGAGGAGGGGGGAAGTGGGCTGGGTGGAGGCACTGGGGACTcacagattttttttgtgtgtgggggggggggggggggggggggctcgggCTATGTGGGTGCCTCGGAAGGAGGTGAAGTGGAGGGGAGTGGGACGCTGACAACGATACAGGAGACGGAAATGGATACAGGAAGCACAACAGGCATAGGAAAGAAGAATTTGAGTTGGTTGGAAGAGATGGATTTTGAGTCAATTTCAGATTCAGAAGACATGGAAAAGATTGATAGAACAAGGGGAGGCTACAGGAAGAGGAAAGCGTCGGTGTCGGTGAAAAAGAACGGAAAAGGAAGAAAACATGACAACAGGGAAATCCGAAAGCCGTGCACGGACGGGTCTTGACTCGTTATTTAAAGACCTGGCCTCTGGATTGAGGTTTAAAAAAACAGGCCAGTATTGATCTGAAGGCAACAGAGAAGGTGACGGAATCGAACCGGcattgcttttcccagtctaCAGGACGAAGattttatgcactacaggtgaattacaggtgaagtcactcaatccagtccctgAGGCCTGTTGGGGGGAACATAccaaggactcctggtgacagctagctgaaagagctacccggATTCATATCACACTGCGGGAGGgacctgtgccctaggaccatgcctcaggactacctggcatgatgactccttgctgtccc
>XR_005051378.1
TATTTGTCAGGTGTCATTGTAATTGTCTGTTTTTTctcacaaggctgaaatatgtgccctcgctttgaaatgtTACCAAGGtttgtttgtatttcatccaaacTATCTGTGTTAAAAAGTGATGGCTACAGCATATGtcatttcttccactttttgagtgacccAAAGTTCAAGCTGCTTGTCTATTTGGTGAAAATGCAATGTCTGTTTATCAGACTCACTTTGACTTTAAATGGCGCACCAAGACTTGTTCCTTTGCTTACGGCCATACCGGTCTGAGTgatcacttcctgtttggaaagTGAGACAGGTGTTGGTAATTAAgtcgtgagtgagtgagtgagtgagtgagtgagcgagtgagtgagtgtttgttTGCTTGAGAGCTTTTTTGGTTATTTTCAACGTTTTTTGAAGTATAATTTAGATTTTTGCATTTGAAAAAGTTTAAGTTTGATTCGTTTTTCCCCCTTTGCAGTTTTGCTGCTTGGGCGAAAGTTTTTGGcctctttttttttgtttaataTGACGGACAACATGGCAATGACTAACGGAATGGACAAGGACAAAGAAAATGCTCAACGTAAGAAACATGGAGATGAAGGAGGAATGAAATATGGCAAAGATTTTACAGTGGCAGTGGAGTTGATGGGAGAAGATACATTTACAACGATGGAATTACTACGTGCGATTAAAGAGGTGTGTGGAGAGGTGGTGGGATGTAGAGTAAAAGGAGAAAGAAAGTACGAGGTCACGATGAGAAATGGAAAAGGAAAAGAGCACTTAATGGATGGCTTTATGACTAAAGAAACAAGAATAATGGCATTAGACATGGTTTCCAATTAACTAATAGTCTCTTTCATGAATCTGCTTGTATACATGGAAGAGAGTGCTATATTGGCCAAGCTATGTAGCTGGGGTGTATCAGCAGTCTCTGAAATCAGGAGGAGAGTTTGGCCAGGGACGGATATAGCAGATTGCACGAGATACTGCAAAGTGAAATTCACTGATACTGTGAAATCATTACCGTACTCTACAAAGTTTGACACACTTGAAGGTGGAGAGTACTTTAGAGTTATACACGATAAGCAGGTCAGAGTTTGTAGGCTTTGTATTCAGCCTTGAAGGACTGCCCTGAATTCAGATGTTATAAGTGCGGGAAGCAAGGGCATTATGCAAGAAAATGTGAAGGTGGAAAGGAAAGGGCATTTTGCAAAGGATGTCGGATGAGAACTAACGAGTGCAACTGCGGAGAGGTTGTGAATGAGGAGGGGAGCCAGGACCTTTTTGTGGAAGCTGATGTATCACCACGAGCAGAAGAAGACGATGGAGGAGAGGACGTGGTGGAGGGTGGAGAGACGGAGAAAAGAAGATGTGAGAAGATGGAACAGGAGACTCATTAAATAGGGAGCAGTATGGATTCAGAAATAAGAAGAGGGAGTTTTCAGGAGGAGGGGGGAAGTGGGCTGGGTGGAGGCACTGGGGACTcacagattttttttgtgtgtgggggggggggggggggggggggctcgggCTATGTGGGTGCCTCGGAAGGAGGTGAAGTGGAGGGGAGTGGGACGCTGACAACGATACAGGAGACGGAAATGGATACAGGAAGCACAACAGGCATAGGAAAGAAGAATTTGAGTTGGTTGGAAGAGATGGATTTTGAGTCAATTTCAGATTCAGAAGACATGGAAAAGATTGATAGAACAAGGGGAGGCTACAGGAAGAGGAAAGCGTCGGTGTCGGTGAAAAAGAACGGAAAAGGAAGAAAACATGACAACAGGGAAATCCGAAAGCCGTGCACGGACGGGTCTTGACTCGTTATTTAAAGACCTGGCCTCTGGATTGAGGTTTAAAAAAACAGGCCAGTATTGATCTGAAGGCAACAGAGAAGGTGACGGAATCGAACCGGcattgcttttcccagtctaCAGGACGAAGattttatgcactacaggtgaattacaggtgaagtcactcaatccagtccctgAGGCCTGTTGGGGGGAACATAccaaggactcctggtgacagctagctgaaagagctacccggATTCATATCACACTGCGGGAGGGTAAGACACATTGAGACTGTCGAACAATaacagtgttcgagaggagaactggaattaacagaattcTGGGGGCTATCTCTCGAATGAAGATTTCCTTACCTGTCATTCCATccctgtttttgttcatagaagtgaaaGTGTGTCTGGCTCTTGCTAATGATGTGTTCTCTGGAAGAGGGTAGGGCTTTATGGGTGGGCTGTCCATCCTGAGCTGTCTGGTTGTGGGACCTTATTCCtgataccccaccatacccctgtctgcgcattatgccctgaatatattctaccatgcccagaaatctgctccttttattctttgtccccaacactctaggcgaccagttttgatagccttta
>TU336001
gtcaggagacactgtgactccatccgaggacacccccggacagggccaaacaggaaggataagATACTGTGGATCCCTGAAGGAAAGAGCTTATTAGTGTAGGAAGCATTTGATATGGTTAGCATTTGTTTTGGCTTTGTTTGATTATTAGGAGGTTTTTATTTAAATAGTATTGAATTTGAAAGGGATATATGACTTCTATGATGATTAGGATTATTGTTAGGATCAAGATAGATTGATAAAGGAAATGCAAGGACTTTAGAGATTGCCACTCAGACACGTTTTTTTCTAAAATCAATAATTTTAGATAAAGTCAAACAGCGAGACGCTTAGTGGTATTTGAGAGATAGGAGGGAAAAGGGTTACTGTTTAAAtcgataaatatatatttaagaaAATATATAAGTTGCACAGATACTTCTTAAAGTAGAAAAGACACTTGACAGAGAATTCGTACAGGATTGACATGAATGGACGCccaagggagaattggacatgtggaaAATGAAAGGGGCGCTCCTACATGATGATGTCAGACATAAGAATAATttactaatcttacctaagtcattgTTTAGAGTAGGCAAGGTggttacctgggcagagccaggtatcaaagGGGGGATGGGTAAATTGTGTTCTAGGATAGGATGTGACCTACTGGAtattaaaattaaaaaattaaaaaaaatagctAACAAGTAGGTATAGAAGTTAAAGATATAATCAGATAGAACaaatgagaaactgtttgttaaccaaacctgtatgtccaagattttatgcactacaggtgaattacaggtgaagtcactcaatccagtccctgAGGCCTGTTGGGGGGAACATAccaaggactcctggtgacagctagctgaaagagctacccggATTCATATCACACTGCGGGAGGGTAAGACACATTGAGACTGTCGAACAATaacagtgttcgagaggagaactggaattaacagaattcTGGGGGCTATCTCTCGAATGAAGATTTCCTTACCTGTCATTCCATccctgtttttgttcatagaagtgaaaGTGTGTCTGGCTCTTGCTAATGATGTGTTCTCTGGAAGAGGGTAGGGCTTTATGGGTGGGCTGTCCATCCTGAGCTGTCTGGTTGTGGGACCTTATTCCtgataccccaccatacccctgtctgcgcattatgccctgaatatattctaccatgcccagaaatctgctccttttattctttgtccccaacactctaggcgaccagttttgatagcctttagccgcacgctcatactactcctcctctgttccgtgggtgatgtggaggtaaacccaggccctgcatgtcctcaggcaccctcatttgttgacttctgggATCGAaaaaaccttggtttcatgcatgtcaacatcagaagcctcctccctaagtttgttttactcacggctttagcacactctgctaaccctgatgtccttgccgtgtctgaatcctggctcaggaaggccaccaaaaattctgagatttccatacccaactataacactttccgtcaagatagaactgccaaagggggaggag
>TU336000
GGGAGTGGGACGCTGACAACGATACAGGAGACGGAAATGGATACAGGAAGCACAACAGGCATAGGAAAGAAGAATTTGAGTTGGTTGGAAGAGATGGATTTTGAGTCAATTTCAGATTCAGAAGACATGGAAAAGATTGATAGAACAAGGGGAGGCTACAGGAAGAGGAAAGCGTCGGTGTCGGTGAAAAAGAACGGAAAAGGAAGAAAACATGACAACAGGTAGAAGATaatgagaaaatatatatattttttattatttattggaATGGTTCATTTTTTGTCAATCAATGCGAATGGTTTAAGAACAATGGAAAAATTTCAAagaatagtaaaaatgaagaattCAGAGATTTTATGCCTTCAAGAAACACATTGGGACAATGTATGTATTTTAGAAGTTAAAAAAATATGGAGAGATTTTATTTTTGTTAACAATGGCAGGAGGAATTCAAGTGGTGTTGATATTTTATTGAGGAAGGATGTAGTAGATAATGTGAAACATatatataatgataataatgggAGGATTTTAATTTTAGATTTTGAATATATGAGTATGGTTTttagaattataaatatttatgCGCCTAATACTGAAATAGAGCACAAAGATTTATTTTTAGAATCAGGAAAATGGTGTGAGGGAAACtgtgttgtagttggggattttaATGTTAAAATGGATAGACTGGATATGACAAGATGAGCTATTTTTAGAAGTGATCTAGGTATCTAGGGGGGTTTTAAAGAAGATGATGTTAGAAAAAGGAATGATtgatagatggagagaggaaaaTCCAGACAAAATATAATTTTCTAGAAGGCAGGTGGTTTTAGGGGATTTGAAACAAACAAGGATAGATCTGGGTTTAGTAAAATAAGGTTTAAGGAATTTTATGAAAGATATTAAGtatgtttttacaacttttagTGATCATGCAGGTTTAACATTTTCAGTGGGCTTAGATAAGGAAAAAACAGGGGTGGAATATGGTGTATGAATGCAGGGTATTTAGAAGATGAGGAATATGGGAAACAACTTAAATCTTTGATAGCATGTGAAATGGAGGATAAGCAGAAAGAGAATGATAAGTGTTTATGGTGGGACAAGGTTAAGGAAAAAATTAAAGTTTTTAGTGTAAAATATGCAAGGAAAAAGAGAGGTAGGGTGAAAAGAGAAGAAAATGAGTTGAGAGCTAAATTGGATGAAGAAATGGGGAAGTGTGACAGTGAGCCTAATTATAATATAGAAACGTTTTTGGATTTAAAAGCACAATTGAGTAAATATGAAATAGATAAGTGTAAGGGTGCAATTATAAGAAGTAAGGCAAAGTATGTTTTGGATGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051379.1 False 2145 mRNA 0.45 4 73960416 73973401
XR_005051378.1 False 2443 mRNA 0.44 3 73963603 73973401
TU336001 False 1573 lncRNA 0.42 1 73963300 73964872
TU336000 True 1349 TUCP 0.33 1 73970482 73971830

Neighbor

gene id symbol gene type direction distance location
LOC110520575 LOC106586746 coding downstream 71194 73883541 ~ 73889222 (-)
LOC110520572 cep97 coding downstream 82840 73870489 ~ 73877576 (-)
LOC110520571 LOC106586749 coding downstream 92041 73852084 ~ 73868375 (-)
zgc:92313 LOC106586754 coding downstream 200682 73739671 ~ 73759734 (-)
LOC110520558 LOC106586756 coding downstream 263054 73661996 ~ 73697362 (-)
LOC118964355 NA coding upstream 51 73973452 ~ 73973615 (-)
LOC118964353 NA coding upstream 929 73974330 ~ 73974439 (-)
LOC118964361 NA coding upstream 3979 73977380 ~ 73977551 (-)
LOC110520577 LOC106586797 coding upstream 12500 73985901 ~ 74028822 (-)
LOC100136284 LOC106586796 coding upstream 131119 74104520 ~ 74107240 (-)
G296151 NA non-coding downstream 1429 73957970 ~ 73958987 (-)
G296148 NA non-coding downstream 4369 73954904 ~ 73956047 (-)
G296152 NA non-coding downstream 8314 73950507 ~ 73952102 (-)
G296145 NA non-coding downstream 10245 73949925 ~ 73950171 (-)
G296144 NA non-coding downstream 10708 73948071 ~ 73949708 (-)
G296203 NA non-coding upstream 4210 73977611 ~ 73977948 (-)
G296206 NA non-coding upstream 9701 73983102 ~ 73983378 (-)
G296213 NA non-coding upstream 35918 74009319 ~ 74009676 (-)
G296267 NA non-coding upstream 137555 74110956 ~ 74113300 (-)
G296295 NA non-coding upstream 193161 74166562 ~ 74167156 (-)
G296166 LOC106581959 other downstream 80045 73877719 ~ 73880371 (-)
G296100 LOC106586751 other downstream 150820 73808482 ~ 73809596 (-)
G296102 LOC106586753 other downstream 185117 73773154 ~ 73775299 (-)
G296043 NA other downstream 327380 73632038 ~ 73633036 (-)
G296315 NA other upstream 265786 74239187 ~ 74239795 (-)
G298065 NA other upstream 1987146 75960547 ~ 75963074 (-)
G298131 NA other upstream 2081720 76055121 ~ 76057006 (-)
G298192 NA other upstream 2192602 76166003 ~ 76166401 (-)
G299024 NA other upstream 2809442 76782843 ~ 76787731 (-)
LOC110520576 NA other upstream 5610 73960416 ~ 73973401 (-)

Expression


Co-expression Network