LOC110520577 (LOC106586797)


Basic Information

Item Value
gene id LOC110520577
gene name LOC106586797
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 73985901 ~ 74028822 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597964.2
GTCTACGGGTATTCCCTTCGACCTAACAGTGATCACTTCCCGTCAGACAGTAAAGATGGCGGTTGAACAGCATTGAATATGTTCTGTAATAAGCCATTAAAACGCGGGTATTTGCCAATGTTTCAATGGGGCGAAGACGCCGAGCCCCTACTTAATAATTACGTCGCGCGAAATGATATAGAATATGTGTAACATTTGTTCCAGTTTGAAGTAATTGCGAGTCGATAGTTTACATTTTTTTCGGTCTCCACCGGTGGAGCTTTCCTTGTTATTTTAAAATGGCTCCAGTGCAGATTGGATCAGATGGGCAACTGGTCCCTATCGGGGGTCCCACCTCGGCCACCCAACCGCCTTCGTCCGGACCCCAGGCGACGCAAGGGGTCCGGCTGAGCCTGCTGATTGAGTTTCTCCTGCAGAGGACCTACCATGAAATCACCCTGTTGGGTGAACTTCTACCCAGAAAAACAGACATGGAAAGAAAAATCGAGATCGTTCAGTTTTCTAGTCGGACCAGGCAGCTGTTTGTTCGTCTCCTTGCCCTGGTGAAATGGGCCAGCAACGCTGGGAAGGTGGAAAAGTGTGCGATGATCTCCAGCTTCCTGGACCAGCAGGCCTTCTTGTTTGTGGACACGGCTGACAGGCTGGCATCGCTGGCGAGGGACGCCCTGGTGCACGCACGCCTACCCAGCTTTGCCATCCCGTTTGCCATTGATGTGCTCACCACTGGCTCATACCCGCGCCTGCCCACCTGCATACGAgataaaaTCATTCCTCCAGATCCCATCACTAAAGTGGAGAAACAGACAACCCTGAACCAGCTCAATCAGATCCTGCGACATCGTCTTGTCACAACAGACCTACCACCTCAGCTAGCCAACCTCACCGTGgTTAACGGGCGTGTGAAGTTCCGCGTGGAGGGGGAGTTTGAGGCCACTCTGACAGTGATGGGGGATGACCCAGATATTCCTTGGAGACTCTTGAAGCTGGAGATACTGGTGGAGGACAAGGAGACTGGAGATTGCAGAGCTCTTGTCCACAGTATGCAGGTGAACTTCATCCATGAGCTGGTGCAGTCGCGCCTGTTTGCAGACGAGAAACCACTGCAGGACATGTACAGCTGCCTGCATtctttctgcctgtctctccAGCTAGAGGTCCTCCACTCCCAGACCCTCATGCTGTACCGAGAGCGCTGGGGAGACCTGGTGCAGGTGGAACACTACATGCCTGCCAAGTGCCTCACACTGGCCGTCTGGAAcCAACAGGTCTTGGGCAGGAAGACTGGCACTGCGTCGGTCCACAAAGTCACCATCAAGATTGATGAATCAGACGGCTCCAAGCCTCTGCAGATCTCCCATGATCCTCCGCTCCCTGCCTGTGACTCCAGACTGATGGAGAGAGCCATGAAGATTGATCACTTGTCAGTGGAGAAGCTTTTGATTGACAGCGTGCACGCTCGCTCTCATCAGAAGCTGCAGGAGCTGAAAGCCATCCTGAAGAGCAGCAACCCCAgcgacagctCGTTCATAGAGACCGCTCTGCCCACTCTGGTCATTCCCATCTTGGAGCCCTGTGGACGATCCGAGTGCCTGCACATCTTCGTAGACCTGCACTCAGGGATGTTCCACCCCATGCTGTATGGGATTGaTCAATCCATGCTGGATGACATCGAGAAGACCATCAACGATGACATGAAGCGCATCATATCCTGGCTACAGCAGCTCAAgttTTGGTTAGGAGAGCAGAGGTGTAGACAGTCTGTGAAACACCTCCCCACTATCTGCACAGACATACTACACCTCTCCAACTCTGCTTCCCACCCTGCCAGCAGCCTATCAAAACACAGGCTCTTCATCCGGCTTACCCGCCTACCACAGTATTACATTgtGGTAGAGATGCTGGATATGCCTGGCTGTCCCACAGAGCTACATTACAAGTACTCCTTCCTGTCTGTGTCTCAGTTGGAAGGTGAGGAGGGACCTCCATGCGCCCAGCTCCTGCAGCAGTTCAAGCCGAACCTGGAACAGCTCGTCCTGGACAATTCCGCTGGCCAAGGGGCCCGCCCGGGAGCTAAGAGAAAAtTATCAGGAGACCAGGGAGCTCTGGAGCCCAAGAAGCCCAAGCGCTCGGGGGAGATGTCTGCCTTCAACAAGGAACTGGCTCACCTAGTGGCCATGTGTGACACCAACATGCCCTTCATAAGCCTCAGAGTGGAGttatctcaGATGGAGATTCCCCACCAGGGTGTGCAGGTGGAAGGAGACGGCTGCAGCCACGCCATCCGCATCCTCAAGATCCCTTCCAGTAAGGGTGTAGGGGAGGAGACGAGTCTGGCTTTGGAGCGCTCTCTACTGGATTGCACCTTCCGTCTGCAGGGCCGGAACAACCGCACATGGGTGGCAGAACTAATTCTGACCAACTGCCCACTCAACAGCACACACAGCAAAGAGCAAGcctcTACACGCCATGTGTATCTGACCTATGAGAACCCTCTGTCTGAGCCTgtgggagggaggaaggtggTGGAGATGTTCCTCAACGACTGGATCTCCATCAACCAGCTCTACCAGTGTGTCCTGGTGTTCTCACGATCactagcagAGATGCCGTCCTACCTGAGTCTGTTTAGTGAGATCCGACTGTATAACTACCGCAAACTGGTTCTGTGTTACGGCAGCACCAAGGGCAGCTCAgtgACCATCCAGTGGAACAGTAGCAGCCAGAGGTTCCATCTCTCTCTAGGAACAGTAGGCCCTAACTCAGGCTGTAGTAACTGTCACAACATTATACTGCATCAACTACAGGAGATGTTCAACAAGACCCCTACTGTGGTCCCGCTTCTACAGgTGCTGTCAGATACCCAGGCCCCTCTGAATGCCATCAACAAGCTGCCCACGGTGCCCATGCTGGGGCTGACCCAGCGCACTAACACGGCCTATCAGTGTTTCTCCATCCTTCCCCAGTCAGCCACACACATCCGCCTGGCCTTCCGCAACATGTACTGCATCGACATCTACTGCCGCAGCCGCGGGGTGGTGGCCATAAGAGACGGGGCCTACAGCCTCTTCGACAACACCAAGATCGTGGAGGGCTTCTACCCCGCCCCAGGGCTCAAGacgTTCCTCAACATGTTTGTTGACAGTAACCAGGACGCTCGGCGACGCTCCGTCAATGAAGACGACAACCCGCCCTCGCCGGTGGGAGGCGACATGATGGACACCTTTATGAGCCAATTACAGGcccagcagcaacaacagccaATGAGAGCGGGTCCTGGTGGAGTGTACCCTCCCTTaacctcccctcccaccccttaCCATCCCAACGTGCCCACACAGTCCCCAGGTGCTCTGGACCCCAGCTCCCCGTATGCTATGGTATCTCCCAACCAGAGGGGCCAGTGGCCAGGCTCTCCCCAAGTCTCAGGGCCCTCTCCTGGGGCTCGCATCCACGGCATGTCCCCTGGAAACCCCTCACTCCACTCTCCCATCCCCGACGCCTCACACTCTCCGCGCGCCGGCTCCAGTTCCGGGTCCATGCCCAGCAGTATGCCCCCGCCCCGTAAGCTACCTCAGCGCTCCTGGGCTGCCTCCATCCCCACCATCCTCACCCACAATGCCTTGCACGTGCTGCTGCTGCCCTCGCCCACCCCCTGCCTGGTTCCGGGCCTGGCAGGAAGTTACCTCTGCTCTCCGCTGGAGCGCTTCCTGGGCTCGGTTATCATGAGACGCCACCTGCAGAGGATCATCCAGCTGGAGCCCAACctgtcTATTGTGAACTCCAACGAGCCGGGTGTGATCATGTTCAAGACGGAGGTGTTGAAGTGTCGCGTGGCACTCAACCCAAAGACCTACCAGACCCTGCAGCTCAAAGTAACCCCCGAGAACACCGGTCCCTGGTCACAGGAGGAGCTACAGGTCCTGGAGAAGTTCTTTGAGACTCGGGTGGCCGGCCCACCATTCAAGTACAACACGCTGAATGCCTTCACCAAGCTGCTGGGCGCCCCCACCAACATCCTCAGGGACTGTGTCCGCATCATGAAGCTTGAACTGTTCCCTGACCAGGCCACCCAGTTAAAGTGGAATGTCCAGTTCTGTCTTACCATCCCCCCCAGCGCCCCTCCCATTGCACCCCCAGGAACCATCGCTGTGGTGCTCAAGTCCAAAATGCTCTTCTTCCTCCAGCTGACCCAGAGGCTGCCGCTGCCCCAGGAGCCGGTCAACATCATTGTTCCCATCGTATACGACATGGCCACGGGCTTGACCCAGCAGGCTGACATCCCCAGACAACACTCCTCCTCTGGGGCAGCAGCACTTATGGTCTCCAACATCCTCAAGAGGTTCAGCGAGCTGCACCCGGCACGACAGGGTGAGTGCACTATCTTTGCCTCAGTTCACGAGCTCATGGCCAACCTCAACCTGACCCCTGGTGGTCGTCAGTAGCAACCCCACCTCCCTAGTCGGAAATGGAACCAGAACGGGAACACAACTGAATATGGTTCTATTCTGGAACAGGGAAAGATTCCTTTCTGGAGTCTAATGAACTGGAGACGACGTGCGCCCGCTGGATTTCCCAATGCAACATATATCCTCTCTGCCTCAGCCAACCGACCTAAAACTGATGTACAGTTAGTTTTTCTGTCAAAAAAGGGAGCAGAATTATGCAGAACCATCACACAAGTTTTTAGTCTTGATAAAGAACACATTCATGACCCAAATAAAGGAGTGTTTATCTTGAAAAAGAGAAGTATTCGTTGTCAGAAGAACttcaaaaatatgtatttttttcctcCAGATGCACTTCTTATCAAAGGATTCACAAATTAAGAATATGGGTGTTTACCTAAAGATGCACATTGTTGTAAATTTCAGCATTGAAAAGAATAGTAATGACTTTTGCTAGAGCATGAATTCACATTCGTTCCTTTTTATAACGGAAGATATCAATACTGTTGTGGTACTGGGGCTGAATTGTATCTTAGTAcactatttaaatgtatttttcccTTTTATGATGTCAAACCTAGTCCCTTCCTAGTTCAAACGGGTCACTTTGAACACTGTAAAACTGTGACAAACTTTATAAGCCAGCTGTATTGTATGACTGCTTTTGAGTCCTGAATGAAGATCCAGTCTATCTTTGATTACTATTTAATAAAccaattttaaaaaataa

Function

NR:

description
mediator of RNA polymerase II transcription subunit 14-like

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016592 mediator complex cellular_component

KEGG:

id description
K15156 MED14, RGR1; mediator of RNA polymerase II transcription subunit 14

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597964.2 True 5175 mRNA 0.53 29 73985901 74028822

Neighbor

gene id symbol gene type direction distance location
LOC118964361 NA coding downstream 8350 73977380 ~ 73977551 (-)
LOC118964353 NA coding downstream 11462 73974330 ~ 73974439 (-)
LOC118964355 NA coding downstream 12286 73973452 ~ 73973615 (-)
LOC110520576 NA coding downstream 12500 73960416 ~ 73973401 (-)
LOC110520575 LOC106586746 coding downstream 96679 73883541 ~ 73889222 (-)
LOC100136284 LOC106586796 coding upstream 75698 74104520 ~ 74107240 (-)
LOC110504742 LOC106586786 coding upstream 136696 74165518 ~ 74438687 (-)
LOC110520583 LOC106586790 coding upstream 445136 74473958 ~ 74475223 (-)
LOC100136729 mao coding upstream 467367 74496189 ~ 74562871 (-)
LOC110520585 LOC106586792 coding upstream 557837 74586659 ~ 74645214 (-)
G296206 NA non-coding downstream 2523 73983102 ~ 73983378 (-)
G296203 NA non-coding downstream 7953 73977611 ~ 73977948 (-)
G296151 NA non-coding downstream 26914 73957970 ~ 73958987 (-)
G296148 NA non-coding downstream 29854 73954904 ~ 73956047 (-)
G296267 NA non-coding upstream 82134 74110956 ~ 74113300 (-)
G296295 NA non-coding upstream 137740 74166562 ~ 74167156 (-)
G296296 NA non-coding upstream 140058 74168880 ~ 74169105 (-)
G296299 NA non-coding upstream 141954 74170776 ~ 74171073 (-)
G296309 NA non-coding upstream 196774 74225596 ~ 74225992 (-)
G296166 LOC106581959 other downstream 105530 73877719 ~ 73880371 (-)
LOC110520572 cep97 other downstream 112084 73870489 ~ 73877576 (-)
G296100 LOC106586751 other downstream 176305 73808482 ~ 73809596 (-)
G296102 LOC106586753 other downstream 210602 73773154 ~ 73775299 (-)
G296315 NA other upstream 210365 74239187 ~ 74239795 (-)
G298065 NA other upstream 1931725 75960547 ~ 75963074 (-)
G298131 NA other upstream 2026299 76055121 ~ 76057006 (-)
G298192 NA other upstream 2137181 76166003 ~ 76166401 (-)
G299024 NA other upstream 2754021 76782843 ~ 76787731 (-)

Expression


Co-expression Network