Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110504735 |
| gene name | LOC106586795 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048567.1 |
| NCBI id | CM023221.2 |
| chromosome length | 85311031 |
| location | 74031194 ~ 74104010 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X4 |
| id | description |
|---|---|
| K11840 | USP9_24; ubiquitin carboxyl-terminal hydrolase 9/24 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036975177.1 | False | 10463 | mRNA | 0.53 | 49 | 74031194 | 74100079 |
| XM_036975173.1 | False | 9991 | mRNA | 0.54 | 50 | 74031196 | 74104010 |
| XM_036975174.1 | False | 9973 | mRNA | 0.54 | 50 | 74031196 | 74104010 |
| XM_036975175.1 | False | 9952 | mRNA | 0.54 | 49 | 74031196 | 74104010 |
| XM_036975176.1 | True | 9934 | mRNA | 0.54 | 49 | 74031196 | 74104010 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118964354 | NA | coding | upstream | 53238 | 73977793 ~ 73977956 (+) |
| LOC110520574 | LOC106586745 | coding | upstream | 83181 | 73889766 ~ 73948013 (+) |
| LOC110520573 | LOC106581959 | coding | upstream | 150742 | 73877670 ~ 73880452 (+) |
| LOC118964370 | NA | coding | upstream | 152517 | 73878498 ~ 73878677 (+) |
| LOC118964327 | NA | coding | upstream | 179800 | 73848977 ~ 73851394 (+) |
| LOC110520578 | LOC106586794 | coding | downstream | 14319 | 74118329 ~ 74145750 (+) |
| LOC118964368 | NA | coding | downstream | 33525 | 74137535 ~ 74137651 (+) |
| nyx | nyx | coding | downstream | 45415 | 74149425 ~ 74161940 (+) |
| LOC110520581 | NA | coding | downstream | 168440 | 74272450 ~ 74274991 (+) |
| LOC110520580 | LOC106586789 | coding | downstream | 178131 | 74282141 ~ 74299579 (+) |
| G295271 | NA | non-coding | upstream | 48467 | 73982402 ~ 73982727 (+) |
| G295265 | NA | non-coding | upstream | 56213 | 73972087 ~ 73974981 (+) |
| G295264 | NA | non-coding | upstream | 62071 | 73968884 ~ 73969123 (+) |
| G295263 | NA | non-coding | upstream | 62433 | 73967428 ~ 73968761 (+) |
| G295262 | NA | non-coding | upstream | 64477 | 73965395 ~ 73966717 (+) |
| G295312 | NA | non-coding | downstream | 475 | 74104485 ~ 74108271 (+) |
| G295334 | NA | non-coding | downstream | 7321 | 74111331 ~ 74113961 (+) |
| G295351 | NA | non-coding | downstream | 63245 | 74167255 ~ 74167466 (+) |
| G295353 | NA | non-coding | downstream | 64386 | 74168396 ~ 74168696 (+) |
| G295354 | NA | non-coding | downstream | 67557 | 74171567 ~ 74171916 (+) |
| G295230 | NA | other | upstream | 73405 | 73953246 ~ 73957789 (+) |
| ecrg4a | cssa25h2orf40 | other | upstream | 868791 | 73148293 ~ 73162405 (+) |
| LOC110520546 | LOC106586770 | other | upstream | 890569 | 73133510 ~ 73140625 (+) |
| c3h2orf49 | cssa25h2orf49 | other | upstream | 1008252 | 73018800 ~ 73022950 (+) |
| G294772 | NA | other | upstream | 1131560 | 72899268 ~ 72899634 (+) |
| G295359 | NA | other | downstream | 74433 | 74178443 ~ 74179342 (+) |
| G295421 | NA | other | downstream | 198092 | 74302102 ~ 74302604 (+) |
| G295541 | NA | other | downstream | 389294 | 74493304 ~ 74496718 (+) |
| G295558 | NA | other | downstream | 410133 | 74514143 ~ 74533086 (+) |
| G296694 | NA | other | downstream | 765944 | 74869954 ~ 74872909 (+) |
