LOC100136284 (LOC106586796)


Basic Information

Item Value
gene id LOC100136284
gene name LOC106586796
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 74104520 ~ 74107240 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597965.2
TCCGGGCTGTAACTGAATTCTCAAATTTTGTTTCCAGTCACAATGGGCCGTGTTATCAGGGGACAGAGAAAAGGTGCTGGCTCTGTGTTCAAAGCCCACGTGAAGCACAGAAAAGGTGCTGCTAAACTCCGACACATTGACTTTGCTGAACGTCATGGTTACATCAAGGGAATTGTGAAGGATATCATCCATGACCCAGGCCGTGGTGCTCCCCTGGCCAAGGTGGCTTTCCGTGACCCCTACCGATTCAAGAAGAGGACGGAGCTGTTTATTGCTGCAGAGGGCATCCACACCGGCCAGTTCATCTACTGTGGCAAGAAAGCTCAACTGAACATCGGTAATGTCTTGCCCGTGGGCACCATGCCTGAGGGAACCATCATCTGCTGTCTGGAGGAGAAGCCTGGTGACAGGGGCAAGCTGGCCAGGGCGTCTGGGAACTACGCCACGGTCATCTCCCACAACCCAGACACCAAGAAGTCCAGGGTCAAGCTGCCCTCTGGCTCAAAGAAGGTCATCGCCTCCGCAAACAGAGCCGTTGTTGGTGTGGTTGCTGGAGGTGGACGTATTGACAAGCCCATCCTGAAGGCCGGTCGTGCCTACCACAAGTACAAGGCCAAGAGGAACTCATGGCCACGTGTCCGTGGTGTGGCCATGAACCCTGTTGAGCATCCCTTCGGTGGTGGTAACCACCAGCATATTGGAAAACCCTCAACTATCAGGAGGGACGCACCTGCTGGTCGCAAGGTCGGTCTCATTGCTGCCCGTCGTACAGGCAGACTGCGTGGAACAAAGACCGTCTCGGAGAAGGAGAATTAGATGTCTTGACAATAAAATATGTTCCAATGAAGCTAA

Function

NR:

description
PREDICTED: 60S ribosomal protein L8-like

GO:

id name namespace
GO:0006412 translation biological_process
GO:0015934 large ribosomal subunit cellular_component
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02938 RP-L8e, RPL8; large subunit ribosomal protein L8e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597965.2 True 852 mRNA 0.54 5 74104520 74107240

Neighbor

gene id symbol gene type direction distance location
LOC110520577 LOC106586797 coding downstream 75698 73985901 ~ 74028822 (-)
LOC118964361 NA coding downstream 126969 73977380 ~ 73977551 (-)
LOC118964353 NA coding downstream 130081 73974330 ~ 73974439 (-)
LOC118964355 NA coding downstream 130905 73973452 ~ 73973615 (-)
LOC110520576 NA coding downstream 131119 73960416 ~ 73973401 (-)
LOC110504742 LOC106586786 coding upstream 58278 74165518 ~ 74438687 (-)
LOC110520583 LOC106586790 coding upstream 366718 74473958 ~ 74475223 (-)
LOC100136729 mao coding upstream 388949 74496189 ~ 74562871 (-)
LOC110520585 LOC106586792 coding upstream 479419 74586659 ~ 74645214 (-)
LOC110520587 LOC106586791 coding upstream 570411 74677651 ~ 74680783 (-)
G296213 NA non-coding downstream 94844 74009319 ~ 74009676 (-)
G296206 NA non-coding downstream 121142 73983102 ~ 73983378 (-)
G296203 NA non-coding downstream 126572 73977611 ~ 73977948 (-)
G296151 NA non-coding downstream 145533 73957970 ~ 73958987 (-)
G296267 NA non-coding upstream 3716 74110956 ~ 74113300 (-)
G296295 NA non-coding upstream 59322 74166562 ~ 74167156 (-)
G296296 NA non-coding upstream 61640 74168880 ~ 74169105 (-)
G296299 NA non-coding upstream 63536 74170776 ~ 74171073 (-)
G296309 NA non-coding upstream 118356 74225596 ~ 74225992 (-)
G296166 LOC106581959 other downstream 224149 73877719 ~ 73880371 (-)
LOC110520572 cep97 other downstream 230703 73870489 ~ 73877576 (-)
G296100 LOC106586751 other downstream 294924 73808482 ~ 73809596 (-)
G296102 LOC106586753 other downstream 329221 73773154 ~ 73775299 (-)
G296315 NA other upstream 131947 74239187 ~ 74239795 (-)
G298065 NA other upstream 1853307 75960547 ~ 75963074 (-)
G298131 NA other upstream 1947881 76055121 ~ 76057006 (-)
G298192 NA other upstream 2058763 76166003 ~ 76166401 (-)
G299024 NA other upstream 2675603 76782843 ~ 76787731 (-)

Expression


Co-expression Network