XLOC_021734 (lmbr1l)


Basic Information

Item Value
gene id XLOC_021734
gene name lmbr1l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 27703749 ~ 27727512 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043123
GATTCATTTGAGCATCTGTGAACACGCTGGCTCGCGGAGTTAACGACGTTTATAATTTGCTTGTTAGCATGTAATCATTATTAAGCATTTACTCAActcaatatagaaaaaaaaaactcgacTATCTCGCTGACTTCAGTTGGAGCTCCCGCAATGAGGTGAAACGCTTAGGTTCGCTTTAACGCGAGGCAACTTTCCACGTAGGCTAGATTGTCTTTTCAGAGATTCAAATGTTTTACAACTTATAACCAAGACATGGTTTCAAAGCATGGAAACAGAAGACGTGACGGTTAGAGAGCAAATATTCCACGACCGAGTCCGAGAAAccattATTTGCGTGCTGCTTTTCATTTGCCTGTACATCTTGTCTCACTTCATTCTGACTCACTTTAAGAAGAGTGCTGAGTTTGTCACTGATGACATTGAGGATGCCACTGTCAACAAAATTGCGCTTTGGCTGTGCACATTCACACTCTCAGTGGCCGTGTGTGCAGTTCTCCTGCTGCCCATCTCCATCCTGTCCAATGAAGTCCTGCTCACATTCCCTCACAGTTACTACATGCAGTGGCTCAATGGCTCGCTCATCCGTGGCTTGTGGAACCTAGTCTTCTTATTCTCCAATCTCTCCCTGGTGTTCCTCATGCCATTTGCCTACTTTTTTACTGAATCAGAAGGATTTGCTGGGTCCAAAAAGGGTGTGATGGCACGGGTGTATGAGACTGCTGTGATGCTGCTGCTTCTTAGTCTGTTGGTGCTCGGCATTGTGTGGGTGGCATCAGCCCTTCTCCATCATAACACAGCCCGAGAGAGTCTTTACGacctgtGGGAATATTATCTGCCCTATCTTTATTCTGGAATCTCCCTTTTTGGAGTTCTTCTGCTCTTGTtGTGCACACCCTTTGGGCTATCACGCATGTTTAGTGTCACTGGGAGCTTATTGGTCAAACCTCGGttGTTGGAGAACTTGGAAGAGACCATGAACTGTGCAGTGTTTGAAGAGGCCTCTCTGTCCAGGAAGTTAAAAAGTACCAACACCTGCTGGATCAGTGCGCATTTAGAGGCCCTCAACAAAGAGTTTTTGAGTGTCCAATCCAAGCGCATTACTTTGGAGCTGCGGAAAAGAGCATCTCCTTGGCAGAGAAACCTAGTATACCCAGTGGCCATGCTGCTGCTTTTAGCTTTAACTGCGGTGAGTGTGCTGATGGTGTGTTTCCATGTGCTCGAACTGCTCTTCGATGAATCTGCTATGCCTAGAGGGATGGAGGACCCTCATTTAGGCCTTGCCTCCTTCTCAATGCTGGGTTCTCTGGGAGCTGCGGTGCAGGTTGTCATCATTCTGTATCTCATGGTGTCTTCAGTCGTGGGCTTCTACAGTTCTCCACTCTTCACCGGTTTACTGCCACGTGCACAGGACACAACCCTCACACAGATAATCGGGAACTGTGTTTCACTTTTAATACTCAGTTCTGCACTGCCTGTTTTCTCTCGCACATTGGGAATCACAAAGTTTGACCTGCTTGGAGATTTTGGGCGGCATGACTGGCTTGGCAGTTTCCACATTGTGTTCCTGTACAATATGCTTTTTGCTGGACTCACATCTGCCTGCCTCATCAACACAGTCACATGGGCCTTGCAAAGAGAGCTCATCCGTGCCTTTGGTCTCCACAGACTCCCTCTGACTGTGTCTCGTTCAACAATCCCTCTCAAACTTCTCCTAGCCAACGGCCTCTCAAAGATTCATTGAAAAGCTAATATTATTGGCTAGCAATGCCCTTTTCTGTCTGGAGAAGGGTCAGGATCCCAGTCTGGGGCCTACTATTGGACCAGAGCATTCATTATTGGTAAATGCTCACCAAAGCTGTTTACAAAGGTTACCTGACTGATTTATATTGATGGATTCTGAAGCGACAGTTTTATACGTTGTTTACTGCgataatatttattcatattactGCTTTTTTAATACAAAAAGGGATGTCAAATCACTGGACGCCTCAAACAACCaccttataaaaaaaatgaacaatggTTTCAGAGGACTTTGACATGCGTCCAGACAGGAGAGCTATTTTAGAGGATGACATCACAGCCATGAGCGCGTTTCCTTTTCCTGGTGGTGGAATGAGAGTGTTGAGTTCTGTCCTGGTGGCCCCCCTACGCTTTCCCCTGGTATACCACTATTTTTAGTGTCATCTAACAAACCCTATGCTGTGGGTGCTCATTGCACTGGCAGAGGAAGTCCAGTCTGGCTGGCTTCTAACTGAAGAACCTGACAAAAGGGATGAAAGTGATGTTGGAGACAAATAGTTCAACataacttttttatataaagttaggttgtaaaatgtatgtttaaaaaaaaaaaaaaa
>TCONS_00043124
ATTTGAGCATCTGTGAACACGCTGGCTCGCGGAGTTAACGACGTTTATAATTTGCTTGTTAGCATGTAATCATTATTAAGCATTTACTCAActcaatatagaaaaaaaaaactcgacTATCTCGCTGACTTCAGTTGGAGCTCCCGCAATGAGGTGAAACGCTTAGGTTCGCTTTAACGCGAGGCAACTTTCCACGTAGGCTAGATTGTCTTTTCAGAGATTCAAATGTTTTACAACTTATAACCAAGACATGGTTTCAAAGCATGGAAACAGAAGACGTGACGGTTAGAGAGCAAATATTCCACGACCGAGTCCGAGAAAccattATTTGCGTGCTGCTTTTCATTTGCCTGTACATCTTGTCTCACTTCATTCTGACTCACTTTAAGAAGAGTGCTGAGTTTGTCACTGATGACATTGAGGATGCCACTGTCAACAAAATTGCGCTTTGGCTGTGCACATTCACACTCTCAGTGGCCGTGTGTGCAGTTCTCCTGCTGCCCATCTCCATCCTGTCCAATGAAGTCCTGCTCACATTCCCTCACAGTTACTACATGCAGTGGCTCAATGGCTCGCTCATCCGTGGTAAATGCACACATGTGCAAATGAACAATTAACATGTGGATTTGTGACTGTGACAGAGAGGTTTTCAATGAGAGTCAATAGAGTTGTCTGTCTGATCAATTAAATCTTTGTGAGGTACTCGAGCAGTATTTTGTTGCCTAATCTGTACAgaaatttttatgtgtttttcccCACAAGGACTTAGTGTGGGATCACATTGTGCGATCACATGTTAGGCATGGCAGAAAGTCTGGCAAAAGTGTATAAAATGCTGTAAATCCAAGACACAGATTTAATACTTTGGTATTTTTGCTGGCATATGATT

Function

symbol description
lmbr1l Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in negative regulation of canonical Wnt signaling pathway; receptor-mediated endocytosis; and signal transduction. Predicted to act upstream of or within Wnt signaling pathway and endocytosis. Predicted to be located in endoplasmic reticulum membrane and plasma membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including cardiovascular system; margin; mesoderm; presumptive diencephalon; and retina. Orthologous to human LMBR1L (limb development membrane protein 1 like).

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0006898 receptor-mediated endocytosis biological_process
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-030131-9906 Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in negative regulation of canonical Wnt signaling pathway; receptor-mediated endocytosis; and signal transduction. Predicted to act upstream of or within Wnt signaling pathway and endocytosis. Predicted to be located in endoplasmic reticulum membrane and plasma membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including cardiovascular system; margin; mesoderm; presumptive diencephalon; and retina. Orthologous to human LMBR1L (limb development membrane protein 1 like).

Ensembl:

ensembl_id ENSDARG00000004745

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043123 False 2369 mRNA 0.45 16 27703749 27727512
TCONS_00043124 True 889 lncRNA 0.42 4 27703754 27719163

Neighbor

gene id symbol gene type direction distance location
XLOC_021733 rps26 coding upstream 26233 27675581 ~ 27677516 (+)
XLOC_021732 wnt1 coding upstream 45695 27652906 ~ 27658054 (+)
XLOC_021731 NA coding upstream 187476 27508867 ~ 27516273 (+)
XLOC_021730 si:dkey-9p24.5 coding upstream 347071 27352072 ~ 27356678 (+)
XLOC_021729 tmprss12 coding upstream 352920 27345826 ~ 27350829 (+)
XLOC_021735 dhh coding downstream 13080 27740592 ~ 27749062 (+)
XLOC_021736 kmt2d coding downstream 29472 27756984 ~ 27768993 (+)
XLOC_021737 kmt2d coding downstream 51158 27778670 ~ 27793877 (+)
XLOC_021738 NA coding downstream 143227 27870739 ~ 27872705 (+)
XLOC_021739 NA coding downstream 184567 27912079 ~ 28007307 (+)
XLOC_021724 CT573349.1 non-coding upstream 774891 26928743 ~ 26928858 (+)
XLOC_021722 NA non-coding upstream 1078616 26591124 ~ 26625133 (+)
XLOC_021714 AL845287.1 non-coding upstream 1708608 25995027 ~ 25995141 (+)
XLOC_021691 BX957326.2 non-coding upstream 3142876 24556455 ~ 24560873 (+)
XLOC_021742 NA non-coding downstream 412247 28139759 ~ 28277430 (+)
XLOC_021745 NA non-coding downstream 663157 28390669 ~ 28420584 (+)
XLOC_021747 dre-let-7g-2 non-coding downstream 808849 28536361 ~ 28536457 (+)
XLOC_021748 dre-let-7h non-coding downstream 809153 28536665 ~ 28536778 (+)

Expression


Co-expression Network