LOC110520583 (LOC106586790)


Basic Information

Item Value
gene id LOC110520583
gene name LOC106586790
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 74473958 ~ 74475223 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597975.2
GGGATGCCACAGATCCTTTGACTATAGTCAGGTATAAAGGTAAAGGCTGAAACAGGCAGGACTTcagtgtagcagcagcacagCTCTCAGGAACAACCGCAATCATGATGGGCAAAATCACCTTCTACGAGGACAGGAACTTCCAGGGTCGTTCCTATGAGACCAGCCAGGACTGCGCTGACATGTCCTCCTTCCTGAGCAGGTGTCACTCCTGCAGGGTTGACAGCGGTTGCTTCATGGTCTACGATCACAACAACTACATGGGAAACCAGTACTTCATGAGGAGGGGCGAGTACCCTGACTACCAGCGCATGGGAATGGGAATGAACGACTGCATCAGGTCCTGCCGCATGATCCCCATGCACAAAGGAAACTTCAGGATGAGGATCTACGAGAGGGAGAACTTCGGAGGTCAGATGCACGAGATGACGGACGACTGTGACTCCATCCAGGTCCGCTACCGTATGTCCGACTGCCAGTCCTGCAACGTCATGGACGGCCACTGGCTGATGTACGAGCAGCCCCACTACAGAGGCAGGCAGATGTACATGAAGCCTGGAGAGTACAGGAGCTTCAGTCAGATGGGCATGGGAATGGGAGGCATGAGCGGCAGCATGAGGTTCATGAGCATGAGGCGTATCATGGATAACATGTCCATGTAATATGCTCAGATGTTGTACTAAAAATGGTGAATAAAATAATGTTCCCAATTCTA

Function

NR:

description
gamma-crystallin M3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597975.2 True 715 mRNA 0.52 3 74473958 74475223

Neighbor

gene id symbol gene type direction distance location
LOC110504742 LOC106586786 coding downstream 35271 74165518 ~ 74438687 (-)
LOC100136284 LOC106586796 coding downstream 366718 74104520 ~ 74107240 (-)
LOC110520577 LOC106586797 coding downstream 445136 73985901 ~ 74028822 (-)
LOC118964361 NA coding downstream 496407 73977380 ~ 73977551 (-)
LOC118964353 NA coding downstream 499519 73974330 ~ 73974439 (-)
LOC100136729 mao coding upstream 20966 74496189 ~ 74562871 (-)
LOC110520585 LOC106586792 coding upstream 111436 74586659 ~ 74645214 (-)
LOC110520587 LOC106586791 coding upstream 202428 74677651 ~ 74680783 (-)
LOC118964358 NA coding upstream 402325 74877548 ~ 74877702 (-)
LOC118964328 NA coding upstream 416498 74891721 ~ 74892320 (-)
G296457 NA non-coding downstream 16180 74457340 ~ 74457778 (-)
G296403 NA non-coding downstream 83556 74381791 ~ 74390402 (-)
G296380 NA non-coding downstream 129469 74344279 ~ 74344489 (-)
G296378 NA non-coding downstream 133810 74339887 ~ 74340148 (-)
G296373 NA non-coding downstream 138269 74335373 ~ 74335689 (-)
G296469 NA non-coding upstream 6211 74481434 ~ 74481679 (-)
G296479 NA non-coding upstream 17335 74492558 ~ 74492865 (-)
G296480 NA non-coding upstream 22464 74497687 ~ 74498261 (-)
G296481 NA non-coding upstream 22599 74497822 ~ 74500534 (-)
G296494 NA non-coding upstream 47842 74523065 ~ 74525840 (-)
G296315 NA other downstream 234163 74239187 ~ 74239795 (-)
LOC110520576 NA other downstream 502128 73960416 ~ 73973401 (-)
G296166 LOC106581959 other downstream 593587 73877719 ~ 73880371 (-)
LOC110520572 cep97 other downstream 600141 73870489 ~ 73877576 (-)
G296100 LOC106586751 other downstream 664362 73808482 ~ 73809596 (-)
G298065 NA other upstream 1485324 75960547 ~ 75963074 (-)
G298131 NA other upstream 1579898 76055121 ~ 76057006 (-)
G298192 NA other upstream 1690780 76166003 ~ 76166401 (-)
G299024 NA other upstream 2307620 76782843 ~ 76787731 (-)
pknox1.1 pknox1 other upstream 3361259 77832447 ~ 77844072 (-)

Expression


Co-expression Network