LOC110520585 (LOC106586792)


Basic Information

Item Value
gene id LOC110520585
gene name LOC106586792
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 74586659 ~ 74645214 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597977.2
gctacacaaagataaataacatacatttttgtaaaCTAACTTTTTTGCacctgttactgaaatggttgttccagtttaaacaGCTCAGGTCGTCTCCTCTAACAGTTcctaaccctggcagtcattatgAATGCAGGTTGCAGGTGAATAACAATGCTAACTGTTCGATAGCAAAGCTCAGGATTCCAATAGGAATGACAcctcactttgcaagccagcataatgtgacttgcaggtagGGTTGCAAAAGTCTGGTAAGGCTGATTCCTGGAAATTTGTGCAGAATTATGCAACCCTACTTGTAGGCCTGATTTGGCTtgtaaaccatgagtttcaggccactgtattagggTGATGATAGgcctcaaaataaggccttataAGCTATATaaatgtattgtcataaagagTTTCATGACAACATTCACTTAGGAACTCGTTTGGTGAAGGCCACAGAACTGAAAATGAAtgaattcaacaaccatgtctctgtcactaacaaatacagacATCGGGGGTTTCCCTATAATTCACTAGAAAAGACAAGTCACACTGGGAAATTATATTGGAGGCGTAGCTTAGCTTAGCGAGGGCGTTTCTCAAAATGTTCAAGCTGATTCAActcaaatctggacccctacagcAGGGCTGTTGAACTCATTCCATGGGGGGCTTAGTGTCTGCATGGAATGAGTAGTTgttcctttcaattaagccctagacaaccaggtgtgggGAGTTCCTTTCTAATTAGTGATCTTAATTCATCAATCAggtacaagggaggagcaaaaaccagcagacactcggGCCCAACGTGGAGTGAGTTTGACGCGTGTTCTACAGGGTCACAGTGACTCTATCGGTTTGAGTAATGACTACAAAATAATTTTAAGTAACTGTAGGCTACTCAGACATATTAAGTACAACAGGTTTCCTAAAAAAATGGAGTAATGACAGCACAATGGGGTTTACACTgccaatacagagagagaggcagggaaagcCTCACTCCATCACGTCAGTAAAGAGAACAAGAAAGAAaccgaaacagagagagaaaagtcaCTCCCAGTGAGAAGAGatgcaaacagacaaacagagagagaaaagtcaCTCCCAGTGAGAAGAGATGCAAACAGACAAATAGAGAGGCATAAAAAGGAGTggacagggagaaagaaagagggtgtccctctctcaccctctctgtgtctccctttgAAATTCCTCCATGCCACTTTGACTttaccccctattccctacacccaTCCCACTTCCCAGCCAGCCCTCCCTGGCACCAGTATGCGGCCCCCAgcccccctttctcccccctcagggctgctgctgttgctggtcTTCTGCCCCCTAGTGGTGGTAGCGCAGGCCAGCAGCAGTAAGACGGAGAGCGGACACAGCACACACCATGGAGACACAGACCCAGACCGCTGTATGAGGCATCACTTCGTGGAGACCATCACACACTCCATCTACAAGTGCCACTCCAATatgGTGTTGCTAGCTCGGTGCGAGGGCCACTGCAGCCACACGTCCCGCTccgaccctctcatctccttcagcTCGGTGTTGAAGCAGCCCTTCAAGAGTACCTGTTTCTGCTGCAAGCCCCACACCTCCAAGCTGAAGGCTGTGAGACTCCGCTGTGCCGGAGGGAGCCGCATCACAGCAACCTACCGCTACATCCTCGCCTGCAACTGTGAGGAGTGCAGCTGAGCTGGGAAAAATAATTTTTTTAACTCTAGAACTCTAGAACTCTAGAACTGTCTCCTTGAGAAAGTTTCTGCACCTGCGAGTCGACAGCTGTGAAGAGCGGAATCCTAGAACATGTAAATTAGAAGAACCTGCACCTTTGTAGAACCTATAAGTCCAGGCCCTACCCATGGACCGAGCCAGTGTTTTGGTCCCTGTGTAATGATTAAATTACGATGATTTAACTTCCCCTGGCCTTCATTTGCAAGTAGTGGAACCCTTAGAGCCCAATAGAACTCTAGAGCCTGAGAGTATAGGCTAGACCCATGGACGAATCTAGAACCGTCATGCCTGTTTGTGATGAGGACTCCAGCGCCCCAACGACTATCTGCCTTTTAGAATGGGAAGGGAGGGCAGGAGATTTCTGAACCAATAATAATAATGGATTGGACTTATATAGCGCatttctactaactgaactactcAAAAGCGCTTTACATAGTAACTCACCTCATACACCACCTGGAGGAATGTACCATTTCATGGTTCTACATGTGTTTCTAGACCTGACTGAGAAGTCAGTCATGAGATCCTTCATTCTTCTTGACTCTTTGTCAAACTGCTTTGTCAGTCCTCTAAATATACCACTTATCAGTCTGGACCAAGACTCACCTGAGCTCCTCTCCTCATCCAGTAGCTCAGTCCCCAAACTGAGACTCATTAGGAACCCTGTTCCCAAATTCTGTGTGTCTGGAACCAAGAGAACACTCGGCTCCTCAAGGCTCCCTGAAGGAGTTAGTTCTGCTAATCCATCGAGGGTAGATGACATTTCCCAGAATCCTATAGAACACTGTCTTCTCCCTCATGTGTTCAGACCCAAAAACAATTAACTGCTTTTTCGGTTTCAGCCAAACTCTCAACACTCATTACAAGCAACAACAACACATATGCATATGCATACGCTCGTATTCAATCACTCATCACCTCTCTAATTACACACACCGTCTCCCCACTCTCACCACTAATTACATCTATAAACGTATGGCGGCTACGTCATAAAACCCAACAGCACAACATGCATAAATAAAAGCAGCATGGGACAGAGCAGGCTGTGTATCCTATGAGATACATGTGTCATGACTGTGCTTaactaagtgaaataatctgtctgtaaacaaatgttggaaaaattacttgtgtcatgcacaaaggtGGTGTCccaaccgactttccaaaactatagtttgttaacaagacatttgtggagtggttgaaaaacaagttttaatgactggAACCTAAATGTaagtgaacttccgacttcaactgtatctgtgtGAAACATGATGAACCCTGGCAGGCCATATCACCAGCTGATGTACTCTCAGAGAACAGACTCTTACACGATGACTGCTTTGGCCATAGACCGGAGGACTATAACGCAAAATGCATCAGAGTGCAAAAGTGGAGTTTCCAGAGGgacattctgttgttgggataGCTACACACTATGTTTGGGAGATACAGTGATGGGGAAACCATTGTGCGCAGTGGTATATGGACTGAAAAATGGTCTGTCAATGCTCTGTGAAACTGATGATTTGGTGGTTGTTATTGTTGAAACTATTGATATTATTATCGTGCCAGAGTTTATGATTACTGACACATCATTTGCTATCATTAAGTACTTCACTAATTACGTAATTTCAATATTTAGATACTTTGAGAATGGAATCTGTGTGTTACAGCTTGTGCTGCTCACAATTCAAATACATTCTTTTGACTTACTCTGGATTTGTGCATGTTACCACTTTAGTGCATTTAAGACAGTCCCAAACCATTGGATTTATCAGGAGTCAGGTACTGTGTCTATCTACCAGACTAAGGTATGTGGAGaggaatccattttagaatcgaGCAGAATGGTGTTAAGATAATGATGGACTAAACAAAAGACCTCAGAGTCCCACAGAAGTGATGCCTGAAGTGCTTCGAAATCCTGTCGAGaaagagatcacacacacacacacacacacacacacacacacacacacacacctttgttcGTAGCTATGGCCTCTAACTGTGCCGTCCTCTAGGAAAACAAATTGCTGGTTTGATTTGTTAAGGCAGATCATGGCTGACAGAGCGACTGGCTGCCTCACACGTCAACCTAATAAACAGTCCTTTTGTTtctgcc
>XM_021597976.2
TGAAATAGGGGACAGAGGGATTGAAAAGCTATTGTAGAAGGAAGAGGAGACTCTACTGGCTGTGTCGGATCAGCAGCAGCTGTTGGATATTCCTGTCTTCCTGTCTACGGTGGCGGGTTGAAGaTCCAGACCAAtagacaggagagatggagaggtccAAGAAGAGGACCAACAGAAGAGCTTACCTCCCACGCAGCAGTACCCTTGGCCAAGGCTAGGAGCTCCATACCAACACCCACTGTAAAACCCTAACGCATTTTGAACTCAAATACTTCTACCAGCCCTCCCTGGCACCAGTATGCGGCCCCCAgcccccctttctcccccctcagggctgctgctgttgctggtcTTCTGCCCCCTAGTGGTGGTAGCGCAGGCCAGCAGCAGTAAGACGGAGAGCGGACACAGCACACACCATGGAGACACAGACCCAGACCGCTGTATGAGGCATCACTTCGTGGAGACCATCACACACTCCATCTACAAGTGCCACTCCAATatgGTGTTGCTAGCTCGGTGCGAGGGCCACTGCAGCCACACGTCCCGCTccgaccctctcatctccttcagcTCGGTGTTGAAGCAGCCCTTCAAGAGTACCTGTTTCTGCTGCAAGCCCCACACCTCCAAGCTGAAGGCTGTGAGACTCCGCTGTGCCGGAGGGAGCCGCATCACAGCAACCTACCGCTACATCCTCGCCTGCAACTGTGAGGAGTGCAGCTGAGCTGGGAAAAATAATTTTTTTAACTCTAGAACTCTAGAACTCTAGAACTGTCTCCTTGAGAAAGTTTCTGCACCTGCGAGTCGACAGCTGTGAAGAGCGGAATCCTAGAACATGTAAATTAGAAGAACCTGCACCTTTGTAGAACCTATAAGTCCAGGCCCTACCCATGGACCGAGCCAGTGTTTTGGTCCCTGTGTAATGATTAAATTACGATGATTTAACTTCCCCTGGCCTTCATTTGCAAGTAGTGGAACCCTTAGAGCCCAATAGAACTCTAGAGCCTGAGAGTATAGGCTAGACCCATGGACGAATCTAGAACCGTCATGCCTGTTTGTGATGAGGACTCCAGCGCCCCAACGACTATCTGCCTTTTAGAATGGGAAGGGAGGGCAGGAGATTTCTGAACCAATAATAATAATGGATTGGACTTATATAGCGCatttctactaactgaactactcAAAAGCGCTTTACATAGTAACTCACCTCATACACCACCTGGAGGAATGTACCATTTCATGGTTCTACATGTGTTTCTAGACCTGACTGAGAAGTCAGTCATGAGATCCTTCATTCTTCTTGACTCTTTGTCAAACTGCTTTGTCAGTCCTCTAAATATACCACTTATCAGTCTGGACCAAGACTCACCTGAGCTCCTCTCCTCATCCAGTAGCTCAGTCCCCAAACTGAGACTCATTAGGAACCCTGTTCCCAAATTCTGTGTGTCTGGAACCAAGAGAACACTCGGCTCCTCAAGGCTCCCTGAAGGAGTTAGTTCTGCTAATCCATCGAGGGTAGATGACATTTCCCAGAATCCTATAGAACACTGTCTTCTCCCTCATGTGTTCAGACCCAAAAACAATTAACTGCTTTTTCGGTTTCAGCCAAACTCTCAACACTCATTACAAGCAACAACAACACATATGCATATGCATACGCTCGTATTCAATCACTCATCACCTCTCTAATTACACACACCGTCTCCCCACTCTCACCACTAATTACATCTATAAACGTATGGCGGCTACGTCATAAAACCCAACAGCACAACATGCATAAATAAAAGCAGCATGGGACAGAGCAGGCTGTGTATCCTATGAGATACATGTGTCATGACTGTGCTTaactaagtgaaataatctgtctgtaaacaaatgttggaaaaattacttgtgtcatgcacaaaggtGGTGTCccaaccgactttccaaaactatagtttgttaacaagacatttgtggagtggttgaaaaacaagttttaatgactggAACCTAAATGTaagtgaacttccgacttcaactgtatctgtgtGAAACATGATGAACCCTGGCAGGCCATATCACCAGCTGATGTACTCTCAGAGAACAGACTCTTACACGATGACTGCTTTGGCCATAGACCGGAGGACTATAACGCAAAATGCATCAGAGTGCAAAAGTGGAGTTTCCAGAGGgacattctgttgttgggataGCTACACACTATGTTTGGGAGATACAGTGATGGGGAAACCATTGTGCGCAGTGGTATATGGACTGAAAAATGGTCTGTCAATGCTCTGTGAAACTGATGATTTGGTGGTTGTTATTGTTGAAACTATTGATATTATTATCGTGCCAGAGTTTATGATTACTGACACATCATTTGCTATCATTAAGTACTTCACTAATTACGTAATTTCAATATTTAGATACTTTGAGAATGGAATCTGTGTGTTACAGCTTGTGCTGCTCACAATTCAAATACATTCTTTTGACTTACTCTGGATTTGTGCATGTTACCACTTTAGTGCATTTAAGACAGTCCCAAACCATTGGATTTATCAGGAGTCAGGTACTGTGTCTATCTACCAGACTAAGGTATGTGGAGaggaatccattttagaatcgaGCAGAATGGTGTTAAGATAATGATGGACTAAACAAAAGACCTCAGAGTCCCACAGAAGTGATGCCTGAAGTGCTTCGAAATCCTGTCGAGaaagagatcacacacacacacacacacacacacacacacacacacacacacctttgttcGTAGCTATGGCCTCTAACTGTGCCGTCCTCTAGGAAAACAAATTGCTGGTTTGATTTGTTAAGGCAGATCATGGCTGACAGAGCGACTGGCTGCCTCACACGTCAACCTAATAAACAGTCCTTTTGTTtctgcc

Function

NR:

description
norrin-like

GO:

id name namespace
GO:0016055 Wnt signaling pathway biological_process
GO:0005615 extracellular space cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597977.2 False 3910 mRNA 0.45 2 74586659 74600282
XM_021597976.2 True 2903 mRNA 0.46 4 74586659 74645214

Neighbor

gene id symbol gene type direction distance location
LOC100136729 mao coding downstream 23788 74496189 ~ 74562871 (-)
LOC110520583 LOC106586790 coding downstream 111436 74473958 ~ 74475223 (-)
LOC110504742 LOC106586786 coding downstream 147972 74165518 ~ 74438687 (-)
LOC100136284 LOC106586796 coding downstream 479419 74104520 ~ 74107240 (-)
LOC110520577 LOC106586797 coding downstream 557837 73985901 ~ 74028822 (-)
LOC110520587 LOC106586791 coding upstream 32437 74677651 ~ 74680783 (-)
LOC118964358 NA coding upstream 232334 74877548 ~ 74877702 (-)
LOC118964328 NA coding upstream 246507 74891721 ~ 74892320 (-)
LOC118964329 NA coding upstream 270005 74867279 ~ 74929805 (-)
LOC110520594 LOC106586829 coding upstream 889800 75535014 ~ 75579525 (-)
G296494 NA non-coding downstream 60819 74523065 ~ 74525840 (-)
G296481 NA non-coding downstream 86125 74497822 ~ 74500534 (-)
G296480 NA non-coding downstream 88398 74497687 ~ 74498261 (-)
G296479 NA non-coding downstream 93794 74492558 ~ 74492865 (-)
G296469 NA non-coding downstream 104980 74481434 ~ 74481679 (-)
G296553 NA non-coding upstream 2478 74647692 ~ 74647989 (-)
G296521 NA non-coding upstream 19715 74664929 ~ 74665246 (-)
G296622 NA non-coding upstream 111922 74757136 ~ 74761777 (-)
G296625 NA non-coding upstream 118037 74763251 ~ 74764088 (-)
G296315 NA other downstream 346864 74239187 ~ 74239795 (-)
LOC110520576 NA other downstream 614829 73960416 ~ 73973401 (-)
G296166 LOC106581959 other downstream 706288 73877719 ~ 73880371 (-)
LOC110520572 cep97 other downstream 712842 73870489 ~ 73877576 (-)
G296100 LOC106586751 other downstream 777063 73808482 ~ 73809596 (-)
G298065 NA other upstream 1315333 75960547 ~ 75963074 (-)
G298131 NA other upstream 1409907 76055121 ~ 76057006 (-)
G298192 NA other upstream 1520789 76166003 ~ 76166401 (-)
G299024 NA other upstream 2137629 76782843 ~ 76787731 (-)
pknox1.1 pknox1 other upstream 3191268 77832447 ~ 77844072 (-)

Expression


Co-expression Network