LOC118964329


Basic Information

Item Value
gene id LOC118964329
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 74867279 ~ 74929805 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051381.1
gagagagagagagagagagagagagagggagagagaaagggaagagaaaaGTCAGCAGAGGGAGCAGAGACAAAGCATGATGGAGGAAATGAAGTGTGCTCGGCAGCATGTGGACCATGTGCTCAGCATGTAACTGCGGAGTGTCGCGCCATGGAAAGGTGTCTGCAACCCCGGGCTCCCTCCTGCACGACTCTTGGCGTTTGCAACAGCAAGGGGCGGAGGAAGAAAACTCGAGTCCGGAGACAGACAACCACAAGAAGCTGAAATCGCCATGGTGAAGATGATTGACAAGGTGAAGATGATTGACAAGGTGAAGATGATTGACAAGGTGGAGATGATTGACAAAGTAGAGATGATTGACATTGGTCATCCATTCTTCTACCGGTAAGATACTGGTCCTTCCATCTGTTATACAGAGCTTCTAGAGGAATGACGTTGTCATGTGTGTTCAGGCCCTCCGATGTAGACCCAAACATCTTGATTCCTAAAAACTATACCTGTTATAGATTTTACTATTGTCTTCAAAGAGGGAAATACCTGTGGAAGGACTGTACCAATCTAGCTCTCTCCCTATACATTCATTCACTTTTACTTACTGACTTTCCGTATCTATTTAGTGAACTGGTTCACAATTTCTGCAGTTTTGGGTCGAGGATGTTCAATGTCTAATTCAGTCCAAGGGTTGCACTTACATTCAGAGGATCCCCTACTCATTCTCTCATTATTTCACTCTGTCATTCTCTGTGTTCTCATTCTATCATTCTCTcagttctctcattctctcattatTTCACT
>TU336738
AAAGCCCCGCGGCCAGTCAGCGATAAGGGGAGAGGGGAAATGACTTGCAGGAGTCGCAGATGACTGAGTGATGAGATCATTAAGTGCATTCGCGATGAGAAAGTCAGTTGAGAAAGTCAGTTGCTAGAGAAAGTGTTTTTCAgcctttggtgatgttttttttgttgttgtcgcgTTCTGGTTTTTGTAGCATGTAACTGCGGAGTGTCGCGCCATGGAAAGGTGTCTGCAACCCCGGGCTCCCTCCTGCACGACTCTTGGCGTTTGCAACAGCAAGGGGCGGAGGAAGAAAACTCGAGTCCGGAGACAGACAACCACAAGAAGCTGAAATCGCCATGGTGAAGATGATTGACAAGGTGAAGATGATTGACAAGGTGAAGATGATTGACAAGGTGGAGATGATTGACAAAGTAGAGATGATTGACATTGGTCATCCATTCTTCTACCGaaTGGATCCAATGACCTAATGATGATCATGATGAAGATTCTGAAGATTCTTCCACGCAGCAAAGTCATCCACGTGTATCCTCTATCTGTGACCCAGTCCCTCTCCTCCATTCATTCACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051381.1 False 795 mRNA 0.45 3 74915219 74929805
TU336738 True 567 lncRNA 0.47 3 74867279 74921273

Neighbor

gene id symbol gene type direction distance location
LOC118964328 NA coding downstream 22899 74891721 ~ 74892320 (-)
LOC118964358 NA coding downstream 37517 74877548 ~ 74877702 (-)
LOC110520587 LOC106586791 coding downstream 234436 74677651 ~ 74680783 (-)
LOC110520585 LOC106586792 coding downstream 270005 74586659 ~ 74645214 (-)
LOC100136729 mao coding downstream 352348 74496189 ~ 74562871 (-)
LOC110520594 LOC106586829 coding upstream 605209 75535014 ~ 75579525 (-)
LOC110520593 LOC106586828 coding upstream 652227 75582032 ~ 75628909 (-)
LOC110520599 LOC106586824 coding upstream 924928 75854733 ~ 75919692 (-)
trnaa-ugc-5 NA coding upstream 960560 75890365 ~ 75890437 (-)
LOC110520602 LOC100136552 coding upstream 1173032 76102837 ~ 76118153 (-)
G296798 NA non-coding downstream 11467 74903222 ~ 74903752 (-)
G296760 NA non-coding downstream 28185 74800785 ~ 74887034 (-)
G296780 NA non-coding downstream 48558 74866148 ~ 74866661 (-)
G296770 NA non-coding downstream 64548 74846128 ~ 74850671 (-)
G296769 NA non-coding downstream 66515 74844759 ~ 74848704 (-)
G296913 NA non-coding upstream 62586 74992391 ~ 75045399 (-)
G296932 NA non-coding upstream 91089 75020894 ~ 75022104 (-)
G296973 NA non-coding upstream 154236 75084041 ~ 75084275 (-)
G296976 NA non-coding upstream 158981 75088786 ~ 75089038 (-)
G297496 NA non-coding upstream 227515 75157320 ~ 75159783 (-)
G296315 NA other downstream 675424 74239187 ~ 74239795 (-)
LOC110520576 NA other downstream 943389 73960416 ~ 73973401 (-)
G296166 LOC106581959 other downstream 1034848 73877719 ~ 73880371 (-)
LOC110520572 cep97 other downstream 1041402 73870489 ~ 73877576 (-)
G296100 LOC106586751 other downstream 1105623 73808482 ~ 73809596 (-)
G298065 NA other upstream 1030742 75960547 ~ 75963074 (-)
G298131 NA other upstream 1125316 76055121 ~ 76057006 (-)
G298192 NA other upstream 1236198 76166003 ~ 76166401 (-)
G299024 NA other upstream 1853038 76782843 ~ 76787731 (-)
pknox1.1 pknox1 other upstream 2906677 77832447 ~ 77844072 (-)
LOC110520583 LOC106586790 coding downstream 392056 74473958 ~ 74475223 (-)
LOC110504742 LOC106586786 coding downstream 428592 74165518 ~ 74438687 (-)
G296764 NA non-coding downstream 26808 74822496 ~ 74840471 (-)
G296650 NA non-coding downstream 78407 74788657 ~ 74788872 (-)

Expression


Co-expression Network