LOC110520594 (LOC106586829)


Basic Information

Item Value
gene id LOC110520594
gene name LOC106586829
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 75535014 ~ 75579525 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036975220.1
ATGGGTTGGTGGGTTCTCCTGAAGAGCTGTAGGCTAATTCGTGATGTAACAGGAAGTAGACTAATGCGAATGCCTCCCACAATCTGACAGCGGCTCCAGTCCGACACTTTATTCATTGAGTGTTGATACCCTTTAGGTTTGGTTCACTACCATTGCTGCGGAGGTTGcatttgtggggaaaaaaagcTGTCGCTGGAGTGTTTGGTCGGTTAATGTGACTTTCTAAATCGCGGTAGCATTGGATTGTGAACTAATCGCATCAGTCATTTAGCACCAGGGATACCTCCTTGAGACGTCCTCCTTCTCAACGAATGTCCGGAATGCCTTCACTGGCCTTGTCTTAGTTAGCCTTCTATGCCCAAGGCAAACAATGATCCAGCATGATGAGGCCCGTCCGTTCTGTCCTGCTAAAATGGATGCCGCCTGAGATGTGAGGCCAGGAACGTCCATGATCATATGATCGATAGTCATTAAAGAGGGAGAAATAACCAGAAGAGTGGATCGTTTGATATGCCAAAAAAGAAGATGGATTGTTTTGGGTACTGTTGGATGGTCATCTGTCTCCTACTGGGCACTGCTACTGAGATCTTAGTTGCGGCTAGCCCAGAGGTGAACAGTACCCAGCAGCACCTACAGCTGAATGTCTACCACGATATAGGACTCACCAGGAACAAGATTGTGACAGCCCAGTTCGAGTGCTACCAGAAAATCATGAAGGATAACGACCACAACAAAAtagGGCCAGTGTGTAACCGGACCTGGGATGGATGGCTGTGCTGGGACGACACAGAGGCAGGCTTCACTTCAGAGCAGCACTGCCCTGACTACTTCCAGGACTTTGACCCCTCAGAAATGGTGACAAAAATCTGCAGTGAGAACGGACACTGGTTTCTGCATCCCGACAGCAACCGAACGTGGACTAACTACACGCGATGCAACGAGCACACCAAAGAAGGCAGGATGACTGCCATGAATTTATTCTACTTGGCTCTCATTGGCCACGGCTTGTCACTGATATCCCTATTCATTTCCCTGGGAATATTTTTCAATTTCAAGAGTTTAAGTTGCCAGAGGGTCACTCTCCACAAAAACCTCTTCTTCTCCTTTGTTTTGAACTCGGTCATCACCATCATCTGGTTGACCGCTGTGGCGAATAACCAGGAACTGGTACAAAGAAACCCTACAAGCTGTAAAGTGTCCGTGTTCATCCATCTTTATCTGTTTGGCTGCAACTACTTCTGGATGCTATGTGAAGGGATATACCTGCACACCCTCATCGTTGTTGCCGTGTTCGCTGAGAAACAGCACTTGATGTGGTATTATCTCCTCGGCTGGGgCTTTCCTCTAATTCCAGCATCTATACATGCGATCGCTCGCAGTTACTACTACAATGACAATTGTTGGATAAGCTCCAACACTTCACTCCTCTACATAATCCATGGGCCTATCTGCGCTGCTCTGTTGGTGAACCTGTTCTTCCTGTTGAACATTGTGCGTGTCCTGATCACCAAGTTGAAGGTGACCAACCAGGCTGAGTCCAGCCTCTACATGAAGGCCGTGCGCGCCACCCTGATTCTGGTACCTCTCCTGGGCATCCAGTACGTCCTGTTGCCCTACAAACCAGAGGAACGAGTCTCCTCTGAGATCTACGACTACATCATGCACATCTTAATGCATTATCAGGGGCTGCTGGTGGCCACCATCTTCTGCTTCTTCAACGGAGAGGTGCAAGGTGTTCTGAGGAGACATTGGAAACAGTACCGTATGCAGTTCGGGAGCACCTTGACCCACTCGGATGCCATGCGGTCCGCCTCATACACAGCCTCGTCCATCACCGATGTCCAGGGCTGCTACAGCATCGACAGCAACACAGAACACTTGAATGGCAAAGGGGGCTGCCTTGACATCGAGACCTCCATCTTAAAATCGGAGAACCCGTTTGCCTGAAGAAAGGCTAACTCTGCTGTGTATTTGGGaatggaggggag
>XM_036975221.1
ATGGGTTGGTGGGTTCTCCTGAAGAGCTGTAGGCTAATTCGTGATGTAACAGGAAGTAGACTAATGCGAATGCCTCCCACAATCTGACAGCGGCTCCAGTCCGACACTTTATTCATTGAGTGTTGATACCCTTTAGGTTTGGTTCACTACCATTGCTGCGGAGGTTGcatttgtggggaaaaaaagcTGTCGCTGGAGTGTTTGGTCGGTTAATGTGACTTTCTAAATCGCGGTAGCATTGGATTGTGAACTAATCGCATCAGTGCCCAAGGCAAACAATGATCCAGCATGATGAGGCCCGTCCGTTCTGTCCTGCTAAAATGGATGCCGCCTGAGATGTGAGGCCAGGAACGTCCATGATCATATGATCGATAGTCATTAAAGAGGGAGAAATAACCAGAAGAGTGGATCGTTTGATATGCCAAAAAAGAAGATGGATTGTTTTGGGTACTGTTGGATGGTCATCTGTCTCCTACTGGGCACTGCTACTGAGATCTTAGTTGCGGCTAGCCCAGAGGTGAACAGTACCCAGCAGCACCTACAGCTGAATGTCTACCACGATATAGGACTCACCAGGAACAAGATTGTGACAGCCCAGTTCGAGTGCTACCAGAAAATCATGAAGGATAACGACCACAACAAAAtagGGCCAGTGTGTAACCGGACCTGGGATGGATGGCTGTGCTGGGACGACACAGAGGCAGGCTTCACTTCAGAGCAGCACTGCCCTGACTACTTCCAGGACTTTGACCCCTCAGAAATGGTGACAAAAATCTGCAGTGAGAACGGACACTGGTTTCTGCATCCCGACAGCAACCGAACGTGGACTAACTACACGCGATGCAACGAGCACACCAAAGAAGGCAGGATGACTGCCATGAATTTATTCTACTTGGCTCTCATTGGCCACGGCTTGTCACTGATATCCCTATTCATTTCCCTGGGAATATTTTTCAATTTCAAGAGTTTAAGTTGCCAGAGGGTCACTCTCCACAAAAACCTCTTCTTCTCCTTTGTTTTGAACTCGGTCATCACCATCATCTGGTTGACCGCTGTGGCGAATAACCAGGAACTGGTACAAAGAAACCCTACAAGCTGTAAAGTGTCCGTGTTCATCCATCTTTATCTGTTTGGCTGCAACTACTTCTGGATGCTATGTGAAGGGATATACCTGCACACCCTCATCGTTGTTGCCGTGTTCGCTGAGAAACAGCACTTGATGTGGTATTATCTCCTCGGCTGGGgCTTTCCTCTAATTCCAGCATCTATACATGCGATCGCTCGCAGTTACTACTACAATGACAATTGTTGGATAAGCTCCAACACTTCACTCCTCTACATAATCCATGGGCCTATCTGCGCTGCTCTGTTGGTGAACCTGTTCTTCCTGTTGAACATTGTGCGTGTCCTGATCACCAAGTTGAAGGTGACCAACCAGGCTGAGTCCAGCCTCTACATGAAGGCCGTGCGCGCCACCCTGATTCTGGTACCTCTCCTGGGCATCCAGTACGTCCTGTTGCCCTACAAACCAGAGGAACGAGTCTCCTCTGAGATCTACGACTACATCATGCACATCTTAATGCATTATCAGGGGCTGCTGGTGGCCACCATCTTCTGCTTCTTCAACGGAGAGGTGCAAGGTGTTCTGAGGAGACATTGGAAACAGTACCGTATGCAGTTCGGGAGCACCTTGACCCACTCGGATGCCATGCGGTCCGCCTCATACACAGCCTCGTCCATCACCGATGTCCAGGGCTGCTACAGCATCGACAGCAACACAGAACACTTGAATGGCAAAGGGGGCTGCCTTGACATCGAGACCTCCATCTTAAAATCGGAGAACCCGTTTGCCTGAAGAAAGGCTAACTCTGCTGTGTATTTGGGaatggaggggag
>XM_036975219.1
TCAGACGTTTTGTGTGCCCCACCCCTGACAAAGTTTCCCATCCCTGGTCTATATCATCTGCGTGATGGGTTGGTGGGTTCTCCTGAAGAGCTGTAGGCTAATTCGTGATGTAACAGGAAGTAGACTAATGCGAATGCCTCCCACAATCTGACAGCGGCTCCAGTCCGACACTTTATTCATTGAGTGTTGATACCCTTTAGGTTTGGTTCACTACCATTGCTGCGGAGGTTGcatttgtggggaaaaaaagcTGTCGCTGGAGTGTTTGGTCGGTTAATGTGACTTTCTAAATCGCGGTAGCATTGGATTGTGAACTAATCGCATCAGATCGATAGTCATTAAAGAGGGAGAAATAACCAGAAGAGTGGATCGTTTGATATGCCAAAAAAGAAGATGGATTGTTTTGGGTACTGTTGGATGGTCATCTGTCTCCTACTGGGCACTGCTACTGAGATCTTAGTTGCGGCTAGCCCAGAGGTGAACAGTACCCAGCAGCACCTACAGCTGAATGTCTACCACGATATAGGACTCACCAGGAACAAGATTGTGACAGCCCAGTTCGAGTGCTACCAGAAAATCATGAAGGATAACGACCACAACAAAAtagGGCCAGTGTGTAACCGGACCTGGGATGGATGGCTGTGCTGGGACGACACAGAGGCAGGCTTCACTTCAGAGCAGCACTGCCCTGACTACTTCCAGGACTTTGACCCCTCAGAAATGGTGACAAAAATCTGCAGTGAGAACGGACACTGGTTTCTGCATCCCGACAGCAACCGAACGTGGACTAACTACACGCGATGCAACGAGCACACCAAAGAAGGCAGGATGACTGCCATGAATTTATTCTACTTGGCTCTCATTGGCCACGGCTTGTCACTGATATCCCTATTCATTTCCCTGGGAATATTTTTCAATTTCAAGAGTTTAAGTTGCCAGAGGGTCACTCTCCACAAAAACCTCTTCTTCTCCTTTGTTTTGAACTCGGTCATCACCATCATCTGGTTGACCGCTGTGGCGAATAACCAGGAACTGGTACAAAGAAACCCTACAAGCTGTAAAGTGTCCGTGTTCATCCATCTTTATCTGTTTGGCTGCAACTACTTCTGGATGCTATGTGAAGGGATATACCTGCACACCCTCATCGTTGTTGCCGTGTTCGCTGAGAAACAGCACTTGATGTGGTATTATCTCCTCGGCTGGGgCTTTCCTCTAATTCCAGCATCTATACATGCGATCGCTCGCAGTTACTACTACAATGACAATTGTTGGATAAGCTCCAACACTTCACTCCTCTACATAATCCATGGGCCTATCTGCGCTGCTCTGTTGGTGAACCTGTTCTTCCTGTTGAACATTGTGCGTGTCCTGATCACCAAGTTGAAGGTGACCAACCAGGCTGAGTCCAGCCTCTACATGAAGGCCGTGCGCGCCACCCTGATTCTGGTACCTCTCCTGGGCATCCAGTACGTCCTGTTGCCCTACAAACCAGAGGAACGAGTCTCCTCTGAGATCTACGACTACATCATGCACATCTTAATGCATTATCAGGGGCTGCTGGTGGCCACCATCTTCTGCTTCTTCAACGGAGAGGTGCAAGGTGTTCTGAGGAGACATTGGAAACAGTACCGTATGCAGTTCGGGAGCACCTTGACCCACTCGGATGCCATGCGGTCCGCCTCATACACAGCCTCGTCCATCACCGATGTCCAGGGCTGCTACAGCATCGACAGCAACACAGAACACTTGAATGGCAAAGGGGGCTGCCTTGACATCGAGACCTCCATCTTAAAATCGGAGAACCCGTTTGCCTGAAGAAAGGCTAACTCTGCTGTGTATTTGGGaatggaggggag

Function

NR:

description
calcitonin related peptide type 1 receptor-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0001756 somitogenesis biological_process
GO:0001525 angiogenesis biological_process
GO:0048844 artery morphogenesis biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004948 calcitonin receptor activity molecular_function

KEGG:

id description
K04577 CALCRL; calcitonin receptor-like

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036975220.1 False 1988 mRNA 0.49 15 75535014 75579461
XM_036975221.1 False 1896 mRNA 0.49 14 75535014 75579461
XM_036975219.1 True 1856 mRNA 0.49 13 75535014 75579525

Neighbor

gene id symbol gene type direction distance location
LOC118964329 NA coding downstream 605209 74867279 ~ 74929805 (-)
LOC118964328 NA coding downstream 642694 74891721 ~ 74892320 (-)
LOC118964358 NA coding downstream 657312 74877548 ~ 74877702 (-)
LOC110520587 LOC106586791 coding downstream 854231 74677651 ~ 74680783 (-)
LOC110520585 LOC106586792 coding downstream 889800 74586659 ~ 74645214 (-)
LOC110520593 LOC106586828 coding upstream 2507 75582032 ~ 75628909 (-)
LOC110520599 LOC106586824 coding upstream 275208 75854733 ~ 75919692 (-)
trnaa-ugc-5 NA coding upstream 310840 75890365 ~ 75890437 (-)
LOC110520602 LOC100136552 coding upstream 523312 76102837 ~ 76118153 (-)
LOC118944635 NA coding upstream 580592 76160117 ~ 76171119 (-)
G297635 LOC106586807 non-coding downstream 95814 75428272 ~ 75439200 (-)
G297587 NA non-coding downstream 184609 75349368 ~ 75350405 (-)
G297561 NA non-coding downstream 240638 75294083 ~ 75294376 (-)
G297540 NA non-coding downstream 284685 75249684 ~ 75250329 (-)
G297535 NA non-coding downstream 296234 75237905 ~ 75238780 (-)
G297907 NA non-coding upstream 293376 75872901 ~ 75873732 (-)
G298051 NA non-coding upstream 361526 75941051 ~ 75941296 (-)
G298053 NA non-coding upstream 364900 75944425 ~ 75944653 (-)
G298054 NA non-coding upstream 365993 75945518 ~ 75945778 (-)
G298059 NA non-coding upstream 375003 75954528 ~ 75954841 (-)
G296315 NA other downstream 1295219 74239187 ~ 74239795 (-)
LOC110520576 NA other downstream 1563184 73960416 ~ 73973401 (-)
G296166 LOC106581959 other downstream 1654643 73877719 ~ 73880371 (-)
LOC110520572 cep97 other downstream 1661197 73870489 ~ 73877576 (-)
G296100 LOC106586751 other downstream 1725418 73808482 ~ 73809596 (-)
G298065 NA other upstream 381022 75960547 ~ 75963074 (-)
G298131 NA other upstream 475596 76055121 ~ 76057006 (-)
G298192 NA other upstream 586478 76166003 ~ 76166401 (-)
G299024 NA other upstream 1203318 76782843 ~ 76787731 (-)
pknox1.1 pknox1 other upstream 2256957 77832447 ~ 77844072 (-)

Expression


Co-expression Network