LOC110520599 (LOC106586824)


Basic Information

Item Value
gene id LOC110520599
gene name LOC106586824
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 75854733 ~ 75919692 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036975225.1
ATTTAAAGCTTTAACTCTTCCCCACAAAAAAAGCACTGGTGCAGTCTGGGTTGGGTCTGTCTTACTCGCTGCTTTACTGGTAGTGTTCTCTGTGTACATGGTACAGTGACACCCTGTACATTTTCACCTCATTTTGCGCACAAGGAGAGCCCATGTCTTTCCTATAGACATGATGAGCTTTGTGTATTCAAGGATTTGCCTTTTTCTGGTTGTCTCTGTGACTCAAGTTTTGTTTGTGAAATGCCAGGATGGAAACAGTGGAGATGACTTGGGCTGCACGGTTGATGGCCAGGTGTACACCAACCGAGACATTTGGAAACCGGAGCCATGTCGGATCTGCGTGTGCGACAACGGCGCCGTCCTGTGCGACGAGATCCAGTGCGATGAGCTCTCCAACTGTGAGAAAGTGATCATCCCCGAGGGCGAGTGCTGTCCCATCTGCCAGAGCGAGGGCAGCACAGACACCAGTGGCAATGGCAGACCCGATGTTGGCAGAGTCTACAGGGGTCagaaaggagaacctggagatgTACCACAGGTGACTGGGATCAGAGGTCGTCCTGGGCCTATGGGGCCTCCCGGATCTCCAGGATTCAGAGGGGACCGAGGCCAGAAAGGAAGACCTGGGCTGCGTGGACAAGCAGGATACGACGGAGAGCCTGGTGTGCCTGGAAACCCAGGAGAACCAGGGCCTGCAGGAAACCAGGGTCCACCAGGAGGACTGGGAGCTCAGATGGCAGGAGGATTTGGGGATGAGAAATCAGCCGGCCAAATGGCCATGATGCCAGGAACTAGGGGAGAGGCAGGAGCAAGAGGACCTCCTGGGCCAAATGGAAACCCTggccatTCTGGACCGCAAGGACCCCATGGGGAAGTTGGTGATCCAGGTCACATGGGTCAATCTGGACAAAGGGGACCTGAAGGGCCACCAGGAAAGCCGGGTGAAGACGGAGAAGCAGGGAAACCTGGAAATTCAGGAGAGATGGGATTCCCTGGATCAGCAGGAGCTAGAGGATTTCCAGGGACACCAGGGCCTCCGGGATTGAAAGGCCATAGAGGTCACTCAGGTCCAATGGGTTTAAGAGGAGAAACTGGAAGTGTCGGATCCAAGGGTGCATTAGGCCCCACTGGTCCGATTGGCACACCTGGCCCTATGGGCCCTAGAGGCATGCCTGGGGAGAGAGGCCGCTTAGGAGCTAATGGAATACCGGGTATGAAAGGTCCTCCTGGGAACATTGGCAAACCAGGTCCGATGGGTCCATTAGGTATCAATGGTCCCCCAGGATATCCAGGAATTCCAGGAATGAAGGGCCAACCGGGTGCCACAGGAGTGCGGGGCCCCGAGGGGCAACAGGGCCAGAGGGGTGAGACAGGACACCAAGGCAGGGCAGGGGCAATTGGCCTACAAGGTCCTTCAGGAACTGACGGTGGCCCAGGTACTAAGGGTCCAGTGGGTACCATGGGTGTGCAGGGTCCCGGGGGTCACCTCGGTCCCCACGGTCCACCCGGACCTCAGGGAAGTACTGGACAGCCTGGGATCAAAGGTCAACTGGGAGATGTTGGTGTTCCTGGATACAAAGGAGAGGGCGGACCCAAAGGAGAACCTGGTCCCCCTGGTTCCCAAGGAGTGATTGGGCCCCAGGGTGAGGAGGGAAAAAGAGGAAATCGTGGTGACTCTGGTTCATTAGGACCACTGGGTCCTGTTGGTGAGAGGGGGTCACCTGGTAACCGAGGTTTTCCCGGTGCTGATGGATTACCTGGACCTAAGGGTGCTCAAGGAGATCGTGGACCATCTGGCATATCTGGGCCTAAAGGTTCAGGAGGCGATCCAGGGCGCACTGGCGAACCAGGCCTCCCAGGCGCAAGGGGTCTGACTGGTACCCCAGGAGTCCAGGGAGCAGAGGGCAAGCCAGGACCACTGGGCCCAGCAGGAGAAGATGGCCGCCCAGGACCAGCAGGATCTATTGGAACCAGAGGTCCTGCAGGAACCATGGGAACACCTGGACCAAAGGGCTTTAACGGAGATCCAGGGAAGACAGGTGAACAAGGATCTCCAGGAGTGGCAGGACAAAGAGGTCCTCCTGGGAAAGATGGGGAGGTTGGCCCTGCAGGTCCCGCTGGACCTCCGGGTGTGGCTGGTGACAGAGGAGAACAGGGACCTCCCGGTGTGAACGGCTTCCAGGGATTACCTGGACCACCAGGCCCCCCTGGAGAGTCAGGAAAACCAGGTGATCTGGGTATCCCCGGAGAAGGAGGTGCTGTGGGTCAAATTGGACCAAGGGGAGAACGTGGAAtcccaggagagagaggagaacttgGACCTCACGGTTTAGCTGGACCCAAAGGAATCCCCGGAGCACCAGGACCCGATGGACCAAAGGGTAGTCCTGGACCTCACGGTGGACTTGGTGACCTAGGACCTCCTGGTCTTCAGGGGATGCCTGGTGAGAGAGGGATCTCTGGTCCTCCTGGGCCTAAAGGTGACAGAGGAACAAGTGGAGAGAAGGGATCAGAAGGTACACCTGGAAACGATGGCGCAAGAGGTCTTCCTGGTCCTCTCGGCCCACCCGGACCCCATGGACCCAGCGGTGAAAAGGGAGAAGCTGGACCTAAAGGCCCTCCTGGACCTCATGGATCAAGAGCGATGCCTGGAAACCGTGGTGAACCTGGTCCTATTGGTCCTGTTGGGTTTGGTGGGCCACCCGGTCCTGATGGTCAACCAGGAGTCAAGGGGGAGCCCGGAGAGCCAGGTCAGAAGGGTGACGCTGGTTCTCCAGGGCCTCAGGGCTTATCTGGATCCCACGGACCTCCTGGTATTGTTGGTGTGGCTGGACTGAAGGGCGGCAGAGGAACCCAGGGTGCACCTGGCCCCACTGGTTTCCCTGGATCTGCAGGCAGGGTTGGACCACCAGGCTCAACTGGTCCCATTGGAGAGGCCGGACCCCTTGGTCCCCCTGGGAAGGAGGGTCCTCCTGGCCTTCGTGGAGAGAACGGATCCCCTGGAAGACAAGGAGAAAGAGGCCCCCCAGGACCAGCCGGAGGCCCAGGAGACAAGGGAGACTCTGGGGAGGACGGACCCACGGGTCCTGATGGGCCTCCAGGTCCCGCCGGAACAACAGGACAGAGAGGCATTGTGGGTCTTCCTGGTCAGAGGGGAGAGCGTGGAATGCTGGGACTTCCTGGACCAGCGGGTCCTCCAGGGAAACAGGGGACTGCAGGACCTGGGGGAGACAAAGGTCCCCCTGGCCCGGTCGGTTCTCCTGGTGCCAACGGACCCCGTGGCGATCCTGGTCCTGATGGTCATGCTGGATCTGATGGACCACCAGGCAAAGCTGGAGTCATTGGTCAAAGGggagagagaggggaccatGGTCCAGAGGGACTGATCGGGACCCCGGGACAACCCGGAACTCCGGGTCCAGTTGGTGCCACCGGTGGTTCTGGAAAGAGAGGAGACGCTGGTTCCAGAGGACCAAATGGTCCCCCCGGTTCAACAGGAAAGAGAGGGTTAACGGGACCACAAGGACCCAGAGGTGATAAGGGTGACCTGGGAGACCACGGAGATAGAGGACAGAAGGGACACAGGGGATTCACCGGTTTACAAGGTTTACCCGGACCACCAgGTACAACAGGAGAGCAGGGAGCATCAGGAATAGTCGGGCCAAGTGGACAAAGAGGACCCTCTGGACCAGTTGGACCCCCAGGAAAAGAAGGGTACATCGGCCAGCCTGGACCAATGGGACCTCCTGGAACCCGTGGAATTAGCGGCGAGATCGGACCTGAGGGACCTCCTGGAGAGCCAGGCCCCACTGGTCTCCCCGGCCCTCCCGGCCCCCCCACAGCTGCCATGGATGACCTGTTTGGCGCCATGCAAGACTACGATGAcggcccccctccccctcccgaGTTCAATGAGGATGAGGCTTTGCCCAACAGCAATGCCACCCAGCAGCTGGACCCAGGTGTCCAGGCCACTCTGAAGGCCCTCAGCAGCCAGATCGACAGCATGAAAAGCCCCGACGGCAGCAGGAAGCACCCGGCCAGGACCTGTGAGGACTTAAAGCAGTGCTACCCACTGAAAAAGAGCGGTGAATACTGGGTCGATCCAAACCAAGGAAGCTCAGAGGACGCTATCAAAGTACATTGTAATATGGAGACGGGAGAGACTTGCATCTCAGCCAATCCCGCCAGCATACCTCGCAAAGTGTGGTGGAGCACCTCAAGGAATAAGCCTGTGTGGTTTGGAGCGGACATCAATAGAGGACAGCAATTCACCTATGGTAACAAAGACCAGCCGGCCAACTCTGTCACGGTTCAGATGACGTTCATTCGTCTGCTTTCCAAAGAGGCTTCTCAGACCATTACCTACCACTGCAAGAACACAGTGGGCTACAAGGACGAGTCGACTGGGAACCTGAAGAAAGCTGTCATCCTCAAGGGGTCCAATGACCTGGAGCTCAAAGCAGAGGGAAACAGCCGCTTCAGATACACCGTGGTGGAGGACAGTTGTGGACAATCCAATGGTAACTGGGGCAAGACCGTGTTTGAGTACAGGACACAGAAAACAGCCAGACTTCCCATCATGGATATGGCCCCTGTGGACATTGGTGGTTCAGATCAGGAGTTTGGTATCGATATTGGCCCTGTTTGCTTCCTTTaaattgcaacaacaacaacaacagggacaCATTGAAGACAATCCTGAGACTCTTGAACTATCAGCTGACGCGATCAGCCTTGTACATACAAGTACTGCGGACTATTCTCGCCTCGTGGCAAGATATTTATTGTGCCTTTCCAACCATTCCCCATCGTAGTTGATATGTTTTCGCCCTGTGTATGTTAGATGAATGTTTGGGGGAAACAAAGATCAAGTAAGAAACATTTAGAAACTTTGCTTGAATTTGACAAATACattatgtaagggataatcaacgaggggctatgggttctctggaaaataatgaacaacgtggaaggtgtgttccatgATGGTCTAGCAGAGTGGAACTAGCCTTCCTCTGAGTTGCATATAGCTCAGAATTGATTATCCCTATTATACCAAGGCTACAATTTAAACACATTTACCTcttgaaatgtgttcatttgcaggtagaaatgtgttcaacatccactgaagtagccaGAAAGTTTACTAGAcagctacagtagttgccttggtaaccaaacaaacagacttgctagtttagctaatcAACTAGCTTGTTATTATGAAAATtgaattcaacaatgccaatagTTTTTTCAATtagacttttgctttcaaaaccAGCTCAAACATAGAATATGTAAGAATGAACTAAAGCCATTGAGTTCAACCATGCTGATATACCGTGCGTTATAGAGTAATAATGCTTGCTCTAGACTGCCCTTTAAGCCAATTAGAAATTAGTATTCAAAAATGATATTTCATCTATAAGGTACAAAGATCCAATCCATTGATACTCTATTTGATGTTATGCATAAAAGATGAAAAGCTGCCGTTTGTCCTTGATAAATAtgaatacttaaaaaaatatatatagtcaTTAACTGCTGTTTGTAAGATGAGAACACCAttctacttaagcaataaggcacgagggggtgtggtatatggcctatataccacggctaagggctgttcttggcAGTAcgccccaaggtgccttattgcaatTATAAACTGGTTCCCAAActtattagagcagtaaaaataaatgctttgttatacccgtggtatacgatcTGATAGcagtcagcattcagggctcaaaccacccagtttattaaATAATGTAACTATAATGGTTTATTCCACCACTAAAGATCTCCTAAGCTCTTAATGTTTTACATCATTTCTTTCATTTATGTTCATACAACAACAGTTTTCAATGTACAATGAATGTTTATGGTGCTATTGAGGAAATTACATTGTTCTTTTTGTCCAGAACTGAAAAATCCAAGTTATCCTAGCTCTGAACTGACTCCATTGAATCCAAATTAAAGATCCAACCAGACTGTTGATTCCTCAGTGTTAGATACCAGTGGATTTCTCAGTGTTAGCTACCTGTCGATTCCTCAGTGTTAGCTACCTCGTCTCCACAAACTGGGATGCCATGATTATGTGTAACCCTGTTCACAGGTTTGGTGCTGTCTGTAAGTGTTCCTCTcccatatacagtacaggggagGGTTAGAGACTACCAATAAAGATGGAGAGGTGGAATCAATGTCTCGTACACAGTGTGTGGTGATTGTCTTTTTAAATAATTGCTTTAATTTTCAATTAGCCCTGGTCATTTTAACACTTTGAGTGTGCTATGTTTGTAATTCCTGatcattttttttacatattaTCTTTTAAATCGTGATCATTTTAACACTACGAATGTGTTATATTTTTAATATATGATCATTTTAACACTACaagtgtgttgttgtttttttctgcaTGTCGGTCAACCCTTTAAGTCACATTCTCTTAGTTTTATAGAAACTTTTTGAGACGAAGCCTATTTGCTTCATGTATTTTTTGCTATGCAACAAATTAAACAAAACGCTTGTCTATCCCCAAAGTTCTTTTTTTTGTCATATTAATTAGCTAAAGTTCTCCTTTTTAGGGAAAAGCTGAGCCTTTCTGCATTTACTAAGCAATTTGTCTCCAcagataaatatataaatatttacagGAAATATTGGCGTAGGTAAAAGACATATTACATGTGAATTGAACATAGCTTTGTAATTATACATGTATTATGTCCATTGTGATGTTGATTTATGTCTCTCTTTAGTTAAGCTTTTCTTAAATCAACTTTCTAATTCCTTTGTTTGAGGACACTTTCCATAATGATAGTATTTATTAAATATTTCAAAACTGTAAATATTCTGGTGGCAGATTGGTCTGATTGCTTATGACCATCTCAGAGGCAGATCAATAGGATATTCTATCCCGGGAACCAAGTCAGTTTCATCCACTGAAATAAATATTGAAAAGAT

Function

NR:

description
collagen alpha-2(V) chain-like

GO: NA

KEGG:

id description
K19721 COL5AS; collagen type V/XI/XXIV/XXVII, alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036975225.1 True 7002 mRNA 0.50 53 75854733 75919692

Neighbor

gene id symbol gene type direction distance location
LOC110520593 LOC106586828 coding downstream 225824 75582032 ~ 75628909 (-)
LOC110520594 LOC106586829 coding downstream 275208 75535014 ~ 75579525 (-)
LOC118964329 NA coding downstream 924928 74867279 ~ 74929805 (-)
LOC118964328 NA coding downstream 962413 74891721 ~ 74892320 (-)
LOC118964358 NA coding downstream 977031 74877548 ~ 74877702 (-)
LOC110520602 LOC100136552 coding upstream 183145 76102837 ~ 76118153 (-)
LOC118944635 NA coding upstream 240425 76160117 ~ 76171119 (-)
LOC110520604 LOC106586822 coding upstream 600512 76520204 ~ 76857463 (-)
LOC110520605 LOC106586805 coding upstream 946538 76866230 ~ 76869000 (-)
LOC110520607 NA coding upstream 961798 76881490 ~ 76882509 (-)
G297725 NA non-coding downstream 280111 75574201 ~ 75574622 (-)
G297710 NA non-coding downstream 309864 75544488 ~ 75544869 (-)
G297635 LOC106586807 non-coding downstream 415533 75428272 ~ 75439200 (-)
G297587 NA non-coding downstream 504328 75349368 ~ 75350405 (-)
G297561 NA non-coding downstream 560357 75294083 ~ 75294376 (-)
G298051 NA non-coding upstream 21359 75941051 ~ 75941296 (-)
G298053 NA non-coding upstream 24733 75944425 ~ 75944653 (-)
G298054 NA non-coding upstream 25826 75945518 ~ 75945778 (-)
G298059 NA non-coding upstream 34836 75954528 ~ 75954841 (-)
G298067 NA non-coding upstream 45248 75964940 ~ 75965708 (-)
G296315 NA other downstream 1614938 74239187 ~ 74239795 (-)
LOC110520576 NA other downstream 1882903 73960416 ~ 73973401 (-)
G296166 LOC106581959 other downstream 1974362 73877719 ~ 73880371 (-)
LOC110520572 cep97 other downstream 1980916 73870489 ~ 73877576 (-)
G296100 LOC106586751 other downstream 2045137 73808482 ~ 73809596 (-)
G298065 NA other upstream 40855 75960547 ~ 75963074 (-)
G298131 NA other upstream 135429 76055121 ~ 76057006 (-)
G298192 NA other upstream 246311 76166003 ~ 76166401 (-)
G299024 NA other upstream 863151 76782843 ~ 76787731 (-)
pknox1.1 pknox1 other upstream 1916790 77832447 ~ 77844072 (-)

Expression


Co-expression Network