LOC110520604 (LOC106586822)


Basic Information

Item Value
gene id LOC110520604
gene name LOC106586822
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 76520204 ~ 76857463 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036975231.1
cTGTAGCtagtactactagtactactagtgCACAGTGCTCATAGTcatgttttttcttttttcttcacTTTCAAGCCTGCCTTTTCCTGAACAGCGGGAAAACAGTTCGATGTGGGATTATGCATGGGGTTTAGTGGAAAACGGGAACAAAATTGGGTGCAAGACATGGAGTGTGAAATTTAGAGTGACCTGTTTATAGAATGCGTAACCGTTTTATAAAAGTGCTAGCGATATCGCGTACTATTTGAATAATTTCATCAAATTAGCAGGAACACAGGAGCGCAGTTTTACCTGCTTCAGTAAAGGGCCTGTGAGAATTCACTATGCGGAGTGAAAAACGTAGCTCTGAAATATTACGTTTTTGAATGGGTCCACGCGACTCTGATCTGAAGTTGCCTGGATGGGATGCACAGTGAGTTTCATCTGTTGTGAAGACGACCTCCTACAGATTTCTCCCCACCAACATGACAAAAAGAAAGAGAACAAGAAACTGTTGAAAAAGCCTGAGGAGTTTGAGGGGATCCATTCACACACCTTTCGGGTGAAGACGTTCAAGAAGAGCAAGCACTGTGGCGTGTGCAAACAGACCGTCAGCCAGGAGGGGCTAATTTGCAAAGTGTGCCGGCTGACTTGCCACAAGACATGTGAAGTGAAGGCACCTGGTAACGACATCCCCCTGAAGCATGTAGAGACCTTGGGCTCCACAAAGTCCTCCAAGAGTATGGAGTCTCCACGCATACCATCAAGGAGTGTGAGTCTGCTACAGGCCCTGGAAGAGAACTATGAGTTGGACCTGGTCTACATCACTGAGAGGATCATCTCAGTCTCCTTCTCCAGCTCTGCGGATGAGAACAGCTACTCTGCAAACCTCCGCGAGGTGGCTTCCATGCTGCGCTCCAAACACCAAGACAACTACCTGCTCTTCAACCTCAGCGAGAAACGCTGTGACATCAACCAGCTCAACCCAAAAGTGTTGGACTTTGGCTGGCCGGACCACCACGCGCCTGCCCTGGATAAGATCTGCACTATCTGTAAGGCTATGGACAGTTGGCTGAGTGCAGACAGTCACAATGTAGTAGTGATACACAACAAGGGGAACCGAGGGCGAACAggagtggtggtggcagcatacaTGCATTACAGCAACATATCAGCCAGTGCCGACCAGGCCCTGGACAGGTTCGCCATGAAGAGGTTCTATGAAGACAAAGTACTTCCTGTGGGTCAGCCGTCTCAGAAGAGGTATGTACAGTACTTTAGCGGCCTTCTTTCTGGGAATATTAAGATCAACAACAAACCCCTGTTCCTTCACCACGTCATCATGCACGGCATCCCCAACTTTGAGTCCAAAGGAGGTTGTCGCCCTTTCCTCAAGATCTATCAGGCCATGCAGCCAGTCTACACATCTGGGATCtatagTGTCCAGGGCGACAGCCAGACCAGTGTCTGCATCACCATTGAGCCAGGCCTGCTGCTGAAGGGGGACATTCTGCTGAAGTGTTACCACAAGCGCTTCCGAAGCCCACAGCGGGATGTGATCTTCCGGGTGCAGTTCCATACATGCGCTGTGCACGACTTGGGAATCGTCTTTGGGAAGGATGAGCTCGACGAGACCTTCAAAGATGACAGATTCCCAGATTTTGGAAAGGTGGAGTTTGTTTTTTCCTTTGGTCCAGAAAAAACCAATGGGATGGACCACTTGGAGAATGGGCCCACTGTCTCAGTGGACTACAATACCCAAGATGCTCTAATCCGCTGGGACTCCTATGAGAACCTCGACCAGCATTGTGAGGAGACTATGGATGACGTCATACACACCCAGGGCCCTCTGGACGGCAGCCCCTATGCTAAAGTCCGCAAGAAGGAGTCCATCGAGGATGCAGTCACTGCCAACGACCTCCTGCCCACCGCCACCGAACACGTCCTACCCACGGTTGACCACGCCCTGTCGGTGAGCAGCGACTCAGGCAACTCCACCGCCTCCATCAAGACCGACCGCACTGATGAGCcagccccagcagcagcagccccaCCAGTGAGCCAGCCGCCAGCGGCCCAGGAAGAGGCCCCAGTCTCGGGCACGGTCCTGGCCGTCCAGCTCATCAGTCCCCAGGAGAAGCAGGACCTGGAGCAGCTGCTCAGTGGCCTGGAGGGCCCCATGCATTGCCAGGACTACCTGTCCTCTCCATCGGGCGGAGGGATGGGGATAGGACTAGGGGGAGGGGGAATACTACACCTGGTGCCTGCCCAAGTTCATGTGAATGGCCACAACAGCAGCATGGACAGAGAAACAGATATTCTGGATGACGAGGTGGAACTGCCCACCAGCCAGGAAGGTAACAGCATGGACAGCTTGGGCACTCTGTCATCCGTGGAAGGGAGAGCCACGCCAGCAGACCTCTACTACCAGGCTGAGACGGTTATCAACGGGCATGACAAGGTCCCCTATCTAGAGAGGAGCATCCCAGACAGGCCCCCGGAAAACATTGTCATAAATGTCGCAATAGGCTCACATGATGTGGCTGACCAGGTTCCCGTCACCTTAGTGCGAAGCCTCTGCTCAGCTCAGGATGGGACAGGTGAGTCAGTTCCCCCTGCGAGCGATTACATTATCAGCCAGAATGGAAACCTGTATTGCTCACAGTCATTCGGTGCAGACCAGAATCCCCTCCCTCGAGCGCCAGCACGCAACACCAGCAGCCGTAACGCCGTCCAACGTGGGCTCAACGTGTGGCAGCAATATGGCGTCCCAGAAGAGCCGGTGATGGACGGGGTGTATTTTggctctcctccaccctccatgcCTCTACAGAGCCACCACAGCATGCCCCACTTCCCCCACCAGCAGACTGCCTCACAGCAGGAGATTGAGCAGTCCATTGAGGCGCTCAACCTGCTGATGCTGGACCTGGACCCCGGACGCCTGTTGGGGAAAGTGCCAAAGTCCCAGAGTGTCCCGGGAGATAACAAGGAGGTGGTGACCACACAACCATCCTTTTCCCAGTCCCTGGCCAGGCCCTCCTACCAGGCTGACTCAGCTATCTCAGGAAGCCCTGCACCCAGCCTAGCTCAGGTCATGCTGAGGTCCTCCCCTTTCCAGCCGTCCACGTCTCCAGAGCCCTCTGCCATCCAGAGACCAACAGCCATCTACCACCCTGGTCCCTCTGTAGCCCCCATCCCTGGCTTCCCCACTGAACCTTCTAGCCAAGGGGCAGCCAGAACCAGCTCTCCCACCCAGGTCCCCAGTAGCGTGGGCCAGCTGCAGCTGAAACCCATCAACGTGTACCCCCCCAGCATCGTGTACCCGTCCCTGTCCTCTGAGCTCCGGGAGCCCCAACAGAGCCCCAGTGCCACGTTCTCATCACCCAATCCCAGCGATGCAGAGCCTGATGAAGCGTTCAACGTGGAGGGCCTAGTAGCCCAGCGTGTGTCAGAGTACTCGGCCCGAATGCAACGCCGACTCACGTCTCCTCAGTCTGAGCAccgtcactccctctccctctctgGTGTCCAGTCTTGTGGGACGTCATTGGACGAGGCATCGGCCCCGCCCCATCACCGCACCACTAGTGAGAGACAATGCATCAACGGCCACGACGAAAGCTCTTCCTACCAACCCCCGGTCCGCTCCCCTATTCGTTGCGTCTCACCGGAGTTCGTCAACACCATAGCGCTGAATCCCGGGGGGCGTCCCAAGGAGAGACACATCCACAGCTACAGAGAGGCCTTTGAGGAGTTGGATGGAGGCCAAATCAGCCCCACGCCCACTGTTGGTGGTGAGGTGTTCCCCCATACCCCTGCCTTCCCCGTCTCACCGCAAACCCCTTACTTCAACCTGTGCCAAGCTCGTTCCCCTCCAGGTCTGATGAagacccctctctctgccttggGCCTCAAACCCCACAACCCAGCTGAGATCCACCTCAACCAGAGTGGATCAGAGCCGTTGAGCTACGTGGAGTCAGTGGCCAGATCCGCTGTGGCCGGTGGGGGACCAGCAGGACCCCCCGTGACCCTCACCCCCCCAGGATGGACCTTGGCTAGGCAGACGAACCCTGACCCCTCCCCAACCCTCAACCCCCTATTGTCTAGCTGCAGCCCCATCCACAGATCAGAGGGAGAACACCCGTTGGCTGACAGCAGTGCGATCATCCCCTCGCAAGCGTCCATTGACTCCAGCTTACGCTCCTTTCCTTCCGAGGGCACGTATCCCATCCACTCCCCCACCCCTATCCCCATTGCCACTCCCACCCCATACCTCCAGGCCCTGGGCTCCCCATCTCCCTTCCTTCAAGCCCTGGGAACCCCCACCTCCTCCTACCTGAGCTCCACCTACCCCACCCTGTCTTACCTGTgttcccccaccaccacaccctcCTGGGACCTGGGTCACAGTGGCCATATGGGGAGCTATGTCTCCCCGGACCCCAGCCCCCCCCCCGCTCCAGCCAGAGGCATCTGCCCGGGAAACCTTGTGGCCATCCTCCCCTCGTTAAGATCAAGAAGTCTCCACACACTGCATCGTGACCCCAACACCTCATCTAGCATCCCCTCCCTTCAACATCGGCAACAGCCCACCAATCAGTGCAGCCCTGTCATGGGCCACCAGCCCGGTCCGGCCAATGGCTTTGTGGAGTTTGGGATCACTGGGATGGTAATGACAGGCAGTCCCGTGTTGGGCCGCCACCACTATAACCCATGTGTGTCCCAGGGGACACAGTCTAGCCCAGTGCTGAGCCAACAACCGTCCCTGATGCAGGCCTCCCAGGACAGCCCCATGCTCAGTTGCCAGCCCTCCCTCACCTACAGCCAACCCATCCAGTCCAGTATCCAGAGTAGTCCGGTGCTGAGCCGACATCCATCCCTCACCTACAGCCAACCCATCCAGTCCAGTATCCAGAGTAGTCCGGTTCTGGGCCGACATCCATCCCTCACCTACAGCCAACCCAACCAGTCCAGTATCCAGAGTAGTCCGGTTCTGGGCCTACATCCATCCCTCACCTACAGCCAACCCATCCAGTCCAGTATCCAGAGTAGTCCGGTGCTGAGCCGACATCCATCCCTCATTCACCAGCAGGGCAATGGTAGTAGTCCTGTGCTGGGCCGACACCCGTCCCTCGGCCAGATGTCACAATGCAGTCCAAGTCTGGACCGACACCCAATGCTGCATAGTAGCGGCTACACCACCCCGGACGAAAGGCAGGGCACCCTGTCCCGTCAGAGCTGCTCCTCTGGGTACAACCCGCCCTCCACGCCCTCCTTCCATGTCTCCAACGCGGGCTATCTGGACGAGGGGATAATGATGGGGGTACGGCAGGGCAGTCCGGCCCCACAGGCTCAGCCCCAGCTACCGGAGAAGAGGCGAATGTCCATTGGGGAGAGGCCCAACGGGGGGCTCTCGTACGGGACACTGAATGGGAAAGTGTCCTCCGCCATGTCGAGTGGAGGCAGCACGCCCAGCACTAGCTACTTTCATACACTGCCAGACTTCTCCAAGCTTAACATGACTGATGGGAGTCCAGAGACCAGGCTGAATGTAAAGTTCGTTCAGGATACGTCCAAGTTCTGGTACAAGCCTGATATCTCCCGTGAACAAGCCATCGGCCTGCTGAGAGAGAAGGAGCCAGGGGCCTTTGTCATCCGGGACAGTCACTCCTTCCGAGGGGCCTATGGCCTGGCCATGAAGgtggcctctcctcctcctcctactgctCAGCATTCCAAGAAAGCTGGTGACATCACTAACGAGTTGgtgaggcacttcctgattgagaCGAGTCCTAAGGGAGTGAAACTGAAAGGATGTCCCAACGAACCTTACTTTGgttgtcTGTCAGCTCTGGTGTACCAGCACGCCATGACTCCACAGGCCCTGCCCTGTAAACTGGTCATCCCTACCAGAGATCTCCACCAGGATGTCCCAGATATCGCCACGCCAACCAACCAGGCTGACTACCTCCTGAAACATGGAGCAGCATGCAATGTGCTGTACATCAACTCGGTGGACATGGAGTCTCTGACGGGACCTCAGGCCATCGCCAAGGCGATCTCGGAGACGATGGCCGCCGCGTCCCCACCCACCGCCACCGTTGTGCACTTCAAGGTGTCGCCCCAAGGCATCACCCTGACGGATAACCAGAGGAAGCGTTTCTTCCGGCGCCACTACCCTATCAACACTGTCACGTTTTGTGATGTCGACCCTCAGGAGAGAAGGTGGAATAAACCTGATGGGGGCACAGCCAAGTTTTTTGGGTTTGTGGCTCGGAAGCAAGGAAGCACAACTGACAACGTCAGTCACCTCTTTGCCGAGATGGACCCCGATCAGCCCGCCAGCGCCATCGTCAACTTTGTCTCCAAAGTGATGAGCGGCTCACAGAAACGATGAGCTGACCTTTTGGCGACCCCTGGCTTTTAGTTATTTTGGGTTGTTGTTCTTTTTAACTACGGAGGGAATATATTTCCTTTTTTTTAGTTTGTATTCTAAGTTTAATCTTAGGTTTCACCTCTTTCCTTCTGATCTCGTcttttacctgtgtgtgtgtgtgtgtgtctttgtttctTCTTGGAAGGACTCCTTCGTGGTGCGAACTAGGGGGGATAGAGGAAGTGCAGTTTGTGGGGTGTGGCTGTGTAAGCTGTTGAATGTTGGCTATGGGAGGCCATTGTGATCTCTCTAGCAGGGCAGCACAAGAACAGGAAGAGGAAATCATGTCAGTGATGATGTCAGTGAGTGTGATGCATGAAAAAGAGAAGAAGTAGTAAAGTTGTGTGATGTAAAGAAGGGTGTGAAGCTGTCGGGTTTTGGACTGTTCAACCAAAGATTTTTAAGAAGCAGCAATGTCACTGAAGGTATGTTTGAAACaatatttggtaaaaaaaaaagaaaaatggcTACTTTatcaaaacatttacattttatgtTCTTTCTATATACAAGtaaatactgtatttattttattcctAAAAAGTTTGCATCTTTGCTTTCTTCGCAAACCGTATTCAAAGAAATTTTTGCATGCTGGCGAGTTTAATCAATGTAAATATCACAGAGTAAATCTCTTGGTAGGGCGTGGGTGACTTGGATGACTTGGGGCCTAAAAATGTTGTTGGATTTTTTTTTAGAGCTTTCTGTagagaaagaaaataaagaaaaaagcaCAGTTGTTCTCTTCAGAACAACAGAAAACATCTGACTTCAGAACATCTGTATTGGTCTCCTCCAACTTCCACTGTTCTCTTCAGAACAACAGAACACATCTGAATTCCACTGTTCTCTTCAGAACAACAGAACACTTCTGACTTTTACTGTTATCTTCCGAACAACAGAACATATCTGACTTCCACTGTTCTCTTCAGAACAACAGAACACATCTGAATTCCACTGTTTTCTTCAGAACAACAGAACACATCTGACTTCCACTGTTCTCTTCAGAACAACAGAACACATCTGACTTCCACTGTTCTCTtcagaacaaacaaacacatcTGACTTGCACTGTTCTCTTCAGAACAACAGAACACATCTGACTTCCACTGTTTTCTTCAGAACAACAGAACACATCTGACTTCCACTGTTCTCTTcagaacaacagaacacaactgacttccactgttctcttcagaacaacagaacacatctgacttccactgttctcttcagaacaacagaacacatctgacttccactgttctcttcagaacaaacaaacacatcTGACTTGCACTGTTCTCTTCAGAACAACAGAACACATCTGACTTCCACTGTTCTCTTCAGAACAACAGAACACATCTGACTTCCACTGTTCTCTTCAGAACAAACGAACACATCTGACTTGCACTGTTCTCTTCAGAACAACAGAACACATCTGACTTGCACTGTTCTCTTCAGAACAACAGAACACATCTGACTTCCACTGTTCTCTTCAGAACAACAGAACACATCTGACTTCCACTGTTTTCTTCAGAACAACAGAACACATCTGACTTCCACTGTTCTCTTCAGAACAAACGAACACATCTGACTTGCACTGTTCTCTTCAGAACAACAGAACACATCTGACTTCCACTGTTCTCTTCAGAACAACAGAACACATCTGAATTCCACTGTTCTCTTCAGAACAACAGAACACATCTGAATTCCACTGTTCTCTTCAGAACAACAGAACACATCTGACTTCCACTGTTTTCTTcagaacaacagaacacaacTGACTTCCACTGTTTTCTTCAGAACAACATAACACATCTGACTTCCACTGTTCTCTTCAGAACAACAGAACACATCTGACTTCCACTGTTCTCTTCAGAACAACAGAACACATCAGCTGTTCTCTTCTGAACAACAGAACACATCAGCTGTTCTCTTCAGAACAACATAACACATCAGCTGTTCTCTCCAGAACAACAGAACACATCTGTATTGGTCTCCTCTGACTTCCAACCTTCTTTTCCCCTCTTCTTTTGAATGGTTGAAGGATGGAGGATAGATAGAAGCTTGTCCAGTTTGGTCCAACTATTCACCTACAAAGGGATATTAGAACCCTGTAATGACGCTGGGAGCCGGCGTCTGTTGTTACCCTTCTAGACCAGCCTGCAAAGCACCCCTCTATGGATACATTTGGTTTTGGCTGATTGGTTCCCATAAgtgccactcctctcctcttcgctGTGCATGTATAAGCATCATGGAAGGTCAGAGTTCACTGCTGATTTTTGAAGAGCGGACGGGCAACGAGAGTCCAGGTTGCTACGACTAAAGCATcaagctctctctcttctccttcggAACATTAAAATTATTCTACCCCTGCAACCGTCCCAGTAAAGATTGAGAGAGTCCACTATCTTTACAGATCAGCCTATCAAACGTGTAACACCCACATCATACCCACAAGTAagctatatacatatacatatacatacatagatatatagatatatataaaacatgtttatttttttgctctgtCACTCTTTTAACTCATATAATAAATTGACATATATAGTCCAACCATAAAGATTACTGAGTGTCGAAAAAATATTATTCTGTACTTTGGCTAAGATTTATAAATCATGAGACTGAACTACATCAATATAAATGGTGTGAAGTGTATGTATTTTAAAGCTTTGCTTTAAAACAATTCACTGCATTACTTTGTTTATGTTATGAGTCTTTGTATAAAGCATCATTTGGTATGGGGGAGAAAGAGCGTCTAGCAAAGTTCTTTGTTGCAAAATTGTgccaacattttaaaaaaaatgtaaaaataaacctGCCTAAAATGGAATGGCCAGAGTTAAGCACTTACACGTCATATGAAATATCAATGCACCTATGTGTAGCTGTGTGTTCACTGCATGTTTGGAGGCCAGATATTCTTTCCGTGACTACTTCCTCTATCTAACATCGCAGGTTTAGTGAAGCACCACCGTATTCAAATCTTAAGCAATTATTCATGTTGTTATGTAGGGCCTACTGCCCTCATGTGGTGAACCAACGTTTGACAACCCATTGTGTTTTTACTCTGGCGTTTTAACTGTGATTTCAGCAATGACCAGCGAAACTCAAATGGCTGAGTATATTATTTTCAGAATATGGAAGACAAGTATTATGTCACTTTTTTTGGCCATTATGATTTTGTGAATGTCCTTACTCAATTGGATTCTGTTTGGAGCAGATTAGTCATACCCCGATGGTCAAATCTACTCCAGTGAAAAAAAAAGAACAAGCATTTACATGTGGCATTCTGTCATGTCAAAATACACACTAAATATTTGCTCGTCCACTTCTGTTACCGCttaatgttttgtttttatgCTCCACTGGGTCTTCTTCCATGACGTCTGTACTCGTTCCATTCTGTTCCAACCGTTCATTCCTCTTCAATGAGAATCCCTCCATTTTAAatgaattgtatttattttttttgatGAGTCTCCACTACTGTAAAACTATATGTGTCGAAAGCATGGTTGATTCTGCATTTTTCTATGAGAAACGTGTGAGAAATGCTTGTCGGGTCAATCCCCCCTCTACCACAAATTGAATGTCAGTCTCACGTTATTTGTCGTGTAAGAAGTCTCTTCTGATGTACATGTGGCCACTTTGAGGAAATAGCCTTAGAATGTGTGCATGAATGTGCTGCGATGCCTGTACAGAAGTGTATGTATTTTCATTTGCTTTATTGTATGGCTTTTGTttctgagaagaaaaaaaacatattaaaagtaatttgtgtt

Function

NR:

description
tensin-1-like

GO: NA

KEGG:

id description
K18080 TNS; tensin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036975231.1 True 10239 mRNA 0.50 32 76520204 76857463

Neighbor

gene id symbol gene type direction distance location
LOC118944635 NA coding downstream 349085 76160117 ~ 76171119 (-)
LOC110520602 LOC100136552 coding downstream 402051 76102837 ~ 76118153 (-)
LOC110520599 LOC106586824 coding downstream 600512 75854733 ~ 75919692 (-)
trnaa-ugc-5 NA coding downstream 629767 75890365 ~ 75890437 (-)
LOC110520593 LOC106586828 coding downstream 891295 75582032 ~ 75628909 (-)
LOC110520605 LOC106586805 coding upstream 8767 76866230 ~ 76869000 (-)
LOC110520607 NA coding upstream 24027 76881490 ~ 76882509 (-)
LOC110520611 rab9a coding upstream 221275 77078738 ~ 77082651 (-)
LOC110504825 LOC106586814 coding upstream 226790 77084253 ~ 77102688 (-)
LOC110520613 NA coding upstream 292428 77149891 ~ 77151879 (-)
G298608 NA non-coding downstream 29739 76489887 ~ 76490465 (-)
G298601 NA non-coding downstream 37215 76482790 ~ 76482989 (-)
G298588 NA non-coding downstream 47414 76472585 ~ 76472790 (-)
G298586 NA non-coding downstream 48518 76471366 ~ 76471686 (-)
G298573 NA non-coding downstream 55585 76464316 ~ 76464619 (-)
G299229 NA non-coding upstream 20931 76878394 ~ 76878649 (-)
G299231 NA non-coding upstream 21795 76879258 ~ 76879623 (-)
G299238 NA non-coding upstream 33592 76891055 ~ 76891449 (-)
G299239 NA non-coding upstream 37276 76894739 ~ 76895279 (-)
G299242 NA non-coding upstream 42410 76899873 ~ 76901362 (-)
G298192 NA other downstream 353803 76166003 ~ 76166401 (-)
G298131 NA other downstream 463198 76055121 ~ 76057006 (-)
G298065 NA other downstream 557130 75960547 ~ 75963074 (-)
G296315 NA other downstream 2280409 74239187 ~ 74239795 (-)
LOC110520576 NA other downstream 2548374 73960416 ~ 73973401 (-)
pknox1.1 pknox1 other upstream 979019 77832447 ~ 77844072 (-)
LOC110520626 ndufv3 other upstream 987204 77844666 ~ 77850842 (-)
G300200 NA other upstream 1071023 77928486 ~ 77983204 (-)
G300251 NA other upstream 1177022 78034485 ~ 78035018 (-)
G300470 NA other upstream 1436320 78293783 ~ 78294220 (-)

Expression


Co-expression Network