LOC110520605 (LOC106586805)


Basic Information

Item Value
gene id LOC110520605
gene name LOC106586805
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 76866230 ~ 76869000 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021598002.2
GTCAAACTGTGGAGGAACTAGAGGACTTCAGTCTAGTGTTAGAGAAACAAACTTGAAAATAATTTAATTTCAGTTCAGAAGTGCTGAGACTCCGAGACAGACACTCCTCCGTGCTTCTAACATTTTCGGCTGCTTTTCTAAGCTGTCAAGTGGACATGTAAAGCCAGCTCAtggaaatgcaagaaattgactATAATGATGCACTCTACTCCGACATCTTCAACTTCACCTATCCTCCCATAGACGAGCTCAAGGCAGCCCCCTGTAGTGTGTCTATCTTGGGCTTGAgcagtgttggtctgatggtcaCATACATCATTGTGTTTGTCCTAAGTGTGCTGGGCAACAGTGTGGTCATCTACGTGATGTGCTGCTTGGCCAGGAGCCGGACCACCACAGACATCTACCTGATGCACCTAGCCATGGCCGacctcctcttctccctgacCCTCCCCTTCTGGGCCGTCTACGTCTACTCTCACTGGATCTTTGGTACCTTCCTTTGTAAGCTCCTGTCTGGCCTCCAGGATGCTTCCTTTTATAGTGGGGTCTTCCTGTTAGCGTGCATTAGCGTGGACCGCTACCTGGCTATCGTGAAGACCACGCAGGCGCTGACTCAACGTCGCCACCTGGTGGGGAAAGTTTGTGGAGCCGTGTGGCTGGGGGCAGGGCTTCTCTCATTGCCTGTGGTGCTCCAGCGGGAAGCTATCCAACTGGAGGATCTCAGCGACCAGACCATCTGCTACGAGAACCTGACTGCGTCGAGCAGCAACCAGTGGCTGGTTTTTGTGCGGGTGCTTCGCCACACACTGGGATTCTTCCTGCCGCTGGCAGTCATGGTCGTCTGTTACAGCTGCACGGCGACGACGATGTTCCGTGGCATGCGCAACGCCGTCCATAAACACAAGGCCATGCGCGTCATCCTGGCCGTGGTGTTGGCATTCGTGTTATGTTGGCTGCCGTGCAATGTCAGCGTGCTGGTAGACACATTGATGCGAGGCGGCTTGCTGGGCGAGGAGACATGTGAGTTCCGGAACAGTGTGAGTGTGGCGCTGTACGTGACCAAGGGGATAGCGTTCACGCACTGCGCAGTCAACCCCGTGCTGTACGCCTTCATCGGGCAGAAGTTCCGGAACCAGCTCCTGCTGATGCTCCACAAGCATGGGCTGATCAGCAAGAGGGTGCTGGCCGCTTACCGCAGGGGCTCGGCCCACAGCACGGTCAGTCAAAGGTCTAGGAACACCTCTATTAGCCTGTAAGGTTTCAGTAGTGAGGATTCAATATTTTGTCACATAGCTAGCTTTGCttctatttgtttttgtttttgatgTGCATTGTCTTTTAGTATATTGCAACATGTTTGACACTATCCCATTAGTTTTTTTCCCATTATATTAATCAAAATATAGTTTTTCATGTGATACTTTAATGCTTGCTAAGTATAAACATTAATGTCAAGGCCTAATCTGTACGAAATAAAACTGAATCTTCCAACTTTTACTT

Function

NR:

description
CXC chemokine receptor 2

GO:

id name namespace
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0004950 chemokine receptor activity molecular_function

KEGG:

id description
K04175 CXCR1, IL8RA, CD181; C-X-C chemokine receptor type 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021598002.2 True 1503 mRNA 0.50 2 76866230 76869000

Neighbor

gene id symbol gene type direction distance location
LOC110520604 LOC106586822 coding downstream 8767 76520204 ~ 76857463 (-)
LOC118944635 NA coding downstream 695111 76160117 ~ 76171119 (-)
LOC110520602 LOC100136552 coding downstream 748077 76102837 ~ 76118153 (-)
LOC110520599 LOC106586824 coding downstream 946538 75854733 ~ 75919692 (-)
trnaa-ugc-5 NA coding downstream 975793 75890365 ~ 75890437 (-)
LOC110520607 NA coding upstream 12490 76881490 ~ 76882509 (-)
LOC110520611 rab9a coding upstream 209738 77078738 ~ 77082651 (-)
LOC110504825 LOC106586814 coding upstream 215253 77084253 ~ 77102688 (-)
LOC110520613 NA coding upstream 280891 77149891 ~ 77151879 (-)
LOC110520614 LOC100302030 coding upstream 283248 77152248 ~ 77164446 (-)
G299165 NA non-coding downstream 94221 76770045 ~ 76772009 (-)
G299143 NA non-coding downstream 131443 76734381 ~ 76734787 (-)
G299122 NA non-coding downstream 160271 76705224 ~ 76705959 (-)
G299118 NA non-coding downstream 164293 76701588 ~ 76701937 (-)
G299116 NA non-coding downstream 165478 76700275 ~ 76700752 (-)
G299229 NA non-coding upstream 9394 76878394 ~ 76878649 (-)
G299231 NA non-coding upstream 10258 76879258 ~ 76879623 (-)
G299238 NA non-coding upstream 22055 76891055 ~ 76891449 (-)
G299239 NA non-coding upstream 25739 76894739 ~ 76895279 (-)
G299242 NA non-coding upstream 30873 76899873 ~ 76901362 (-)
G299024 NA other downstream 78499 76782843 ~ 76787731 (-)
G298192 NA other downstream 699829 76166003 ~ 76166401 (-)
G298131 NA other downstream 809224 76055121 ~ 76057006 (-)
G298065 NA other downstream 903156 75960547 ~ 75963074 (-)
G296315 NA other downstream 2626435 74239187 ~ 74239795 (-)
pknox1.1 pknox1 other upstream 967482 77832447 ~ 77844072 (-)
LOC110520626 ndufv3 other upstream 975667 77844666 ~ 77850842 (-)
G300200 NA other upstream 1059486 77928486 ~ 77983204 (-)
G300251 NA other upstream 1165485 78034485 ~ 78035018 (-)
G300470 NA other upstream 1424783 78293783 ~ 78294220 (-)

Expression


Co-expression Network