LOC110504825 (LOC106586814)


Basic Information

Item Value
gene id LOC110504825
gene name LOC106586814
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 77084253 ~ 77102688 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036975238.1
agccaagagagagaaagagagcgagagtgggaggaagagagagagaggggacctgACATATGGGCCTCAGATCACAGAGACTGCTATCAGGAGAGTGAAAAAgagcaagaaagaaagagagagagcgagaggtctACGtactagaggggagagagagagcgagagagagagagacaacgtgAACTGTACCCAGTCAGAGACATGAATCCCCTCAGCTGGATCGTTGTACTTCTCTTCCTGTTCTACGCTTCCTCTGGGAGCGCCGACGTCAACAGGCACCGCAGACAAGTCCCCACCGGTGGCCAACCAGGTGTGTGTGGCTATGGCAGGAGACTGGTGTGTTGCTATGGCTGGAGAAAGAACAGCAAGGGACAGTGTGAAGCTCAGTGTGAACATGGTTGCAAGCACGGAGAGTGTGCTGGTCCCAACGAATGCAAGTGTTACCCAGGATACACCGGAAAGATGTGCAACCAAGATCTGAATGAGTGTGGCCTGAAGCCTCGCCCCTGTGAGCATCGCTGTATGAACACCCACGGCAGCTACATCTGTTACTGCCTCAACGGATACACTCTGATGCCTGATGGCTCCTGTACCAactcccGGACATGCTCCCTGGCTCACTGTCAATATGGCTGTGAGGATGTACAGGGGGAGATCCGTTGTCTCTGCCCGTCTGCGCGGCTGCAGCTAGGGCCAGACCAGAGAACCTGTGTGGATATTGATGAATGTGTAACAGGAAAGAACCTGTGCCCATACAACAGGCAGTGTGTCAACACGTTTGGCAGCTACTACTGCAAGTGTCAGAATGGCTATGACCTGAAGTATATCAATGGCAAATATGACTGTGTAGACAATGACGAGTGTGCCGCCAACACACACAAGTGCAGCCACCGCGCAGTCTGTCTGAACACTCAGGGATCCTACAAGTGCAAGTGTAAGCAAGGCTTCCGTGGCAGTGGTTTTGAATGCTctgCTATCCCAGAGTCCCCAGTGAGGCTGCCAGGGAAGCTGGACAAAGAGCAGATCAAGAACGTCATCCCCGAGCCCAAGGTGACCGTCCCCCCTCAGATCCGCTTGCAGCCCTTCGACTATGACGGGGAGACCTACATGGGTGGCTCAGAGGAGGTGGGCCAGGTGGGCTTTACTGATGtagggaaggaggaagaagaggaagatgaggaggagacagATGTGGACAACAAGCTTAATTCAAGGGGAGATGTTTTCATTCCAGAGGACTTTGAGTCCGTATTTGGTCCTGCAACGGATGTCAAAGAGATCGAAATAGCTCTAGGACAGGAAGAGTTCTTCATGGACTGCAACTTCGATCAGGGCGTGTGTGAGTGGGTGCAAGACAAGGACGATAGCTTTGACTGGAGCGTGTCCTACCATGAAAATGGTATGGAGTACTACATGGCTATGAGTGGTCTTCTGGGAGAGAAGAAGGACCAGGCCAGGCTAAAGCTGCTCCTCAGTGACCGGGCCCAGCAGGGAGGCTTCTGCCTCACCTTCAACTACCGCGTGATGGGCAGCCAGGTGGGCACGCTGCGGGTGCTGTTGAACAACAGCACCGAACTTGTGTGGGAGCAGAGCAGCAGCCGGAGTCAGGATTGGCAGACAGAACTGCTCACTGTAGCCTGGAAGAACCAGGCCCCAGAATCTATCATCTTTGAAGCTGAACGTGGGAATGGAGTTGGGGGAGAGATTGGGCTGGACAACGTGGTGCTGACCTCAGGCTACTGTCAAGGGGAAGACACAGCCATCTTTTAAACTGTGAACTCTGAACCTGTAGAAATCAGTCCAGTGTGGTTGACACAGACCTCAGAGGCAGAGCTAGCATCAGTATCTCCCTTTAGTCTACTCTTTTTGGAGAGCAGACACATCTTCCTAAAACCCAAACTAAGGGTGtatttttttttgctgtactgtacaACAAGTATTAAGAAAAATGTGTATTTGCAGAATGTTTGGGAGTTCAGCCGTCCACATAGGAAAGCGTTGCTGAGGGATTGAGCATCATTGGTATGTGCAGGGATTTCATCTGCAAGTTTACAAGCTTTTCCTTTCATTTGAGCCACCAAGCCAAAGAGAGTAGTGTCCACAAATAAATGATCCACTACATACAGTTCCGTTTTTCAATAATGTTCAcaaatgtttttaaatatattCAATTATTTTCACATAAATGGCAGGATACGGCAGGCTtatctacaacaacaaaaaaacattatatTGTGTTGCTTTTTATTTTTCTAAGTGACATTTTGCAGTTAGctgcaatatataaaaataagaCTTGTGACATGTAGTTAAATGAACCCTAAATGTTAATATCAGGTTCATCAAGAAGTCTTCCCTTGAACCCTACATGCTTTATAATCATAGTACGTGTATGTAACAATGCATAACTGCTGTAAATTGAGCTTTTATAttgtattacatttttaaaaaaaa
>XM_036975239.1
TTTcagccaagagagagaaagagagcgagagtgggaggaagagagagagaggggacctgACATATGGGCCTCAGATCACAGAGACTGCTATCAGGAGAGTGAAAAAgagcaagaaagaaagagagagagcgagaggtctACGtactagaggggagagagagagcgagagagagagagacaacgtgAACTGTACCCAGTCAGAGACATGAATCCCCTCAGCTGGATCGTTGTACTTCTCTTCCTGTTCTACGCTTCCTCTGGGAGCGCCGACGTCAACAGACAAGTCCCCACCGGTGGCCAACCAGGTGTGTGTGGCTATGGCAGGAGACTGGTGTGTTGCTATGGCTGGAGAAAGAACAGCAAGGGACAGTGTGAAGCTCAGTGTGAACATGGTTGCAAGCACGGAGAGTGTGCTGGTCCCAACGAATGCAAGTGTTACCCAGGATACACCGGAAAGATGTGCAACCAAGATCTGAATGAGTGTGGCCTGAAGCCTCGCCCCTGTGAGCATCGCTGTATGAACACCCACGGCAGCTACATCTGTTACTGCCTCAACGGATACACTCTGATGCCTGATGGCTCCTGTACCAactcccGGACATGCTCCCTGGCTCACTGTCAATATGGCTGTGAGGATGTACAGGGGGAGATCCGTTGTCTCTGCCCGTCTGCGCGGCTGCAGCTAGGGCCAGACCAGAGAACCTGTGTGGATATTGATGAATGTGTAACAGGAAAGAACCTGTGCCCATACAACAGGCAGTGTGTCAACACGTTTGGCAGCTACTACTGCAAGTGTCAGAATGGCTATGACCTGAAGTATATCAATGGCAAATATGACTGTGTAGACAATGACGAGTGTGCCGCCAACACACACAAGTGCAGCCACCGCGCAGTCTGTCTGAACACTCAGGGATCCTACAAGTGCAAGTGTAAGCAAGGCTTCCGTGGCAGTGGTTTTGAATGCTctgCTATCCCAGAGTCCCCAGTGAGGCTGCCAGGGAAGCTGGACAAAGAGCAGATCAAGAACGTCATCCCCGAGCCCAAGGTGACCGTCCCCCCTCAGATCCGCTTGCAGCCCTTCGACTATGACGGGGAGACCTACATGGGTGGCTCAGAGGAGGTGGGCCAGGTGGGCTTTACTGATGtagggaaggaggaagaagaggaagatgaggaggagacagATGTGGACAACAAGCTTAATTCAAGGGGAGATGTTTTCATTCCAGAGGACTTTGAGTCCGTATTTGGTCCTGCAACGGATGTCAAAGAGATCGAAATAGCTCTAGGACAGGAAGAGTTCTTCATGGACTGCAACTTCGATCAGGGCGTGTGTGAGTGGGTGCAAGACAAGGACGATAGCTTTGACTGGAGCGTGTCCTACCATGAAAATGGTATGGAGTACTACATGGCTATGAGTGGTCTTCTGGGAGAGAAGAAGGACCAGGCCAGGCTAAAGCTGCTCCTCAGTGACCGGGCCCAGCAGGGAGGCTTCTGCCTCACCTTCAACTACCGCGTGATGGGCAGCCAGGTGGGCACGCTGCGGGTGCTGTTGAACAACAGCACCGAACTTGTGTGGGAGCAGAGCAGCAGCCGGAGTCAGGATTGGCAGACAGAACTGCTCACTGTAGCCTGGAAGAACCAGGCCCCAGAATCTATCATCTTTGAAGCTGAACGTGGGAATGGAGTTGGGGGAGAGATTGGGCTGGACAACGTGGTGCTGACCTCAGGCTACTGTCAAGGGGAAGACACAGCCATCTTTTAAACTGTGAACTCTGAACCTGTAGAAATCAGTCCAGTGTGGTTGACACAGACCTCAGAGGCAGAGCTAGCATCAGTATCTCCCTTTAGTCTACTCTTTTTGGAGAGCAGACACATCTTCCTAAAACCCAAACTAAGGGTGtatttttttttgctgtactgtacaACAAGTATTAAGAAAAATGTGTATTTGCAGAATGTTTGGGAGTTCAGCCGTCCACATAGGAAAGCGTTGCTGAGGGATTGAGCATCATTGGTATGTGCAGGGATTTCATCTGCAAGTTTACAAGCTTTTCCTTTCATTTGAGCCACCAAGCCAAAGAGAGTAGTGTCCACAAATAAATGATCCACTACATACAGTTCCGTTTTTCAATAATGTTCAcaaatgtttttaaatatattCAATTATTTTCACATAAATGGCAGGATACGGCAGGCTtatctacaacaacaaaaaaacattatatTGTGTTGCTTTTTATTTTTCTAAGTGACATTTTGCAGTTAGctgcaatatataaaaataagaCTTGTGACATGTAGTTAAATGAACCCTAAATGTTAATATCAGGTTCATCAAGAAGTCTTCCCTTGAACCCTACATGCTTTATAATCATAGTACGTGTATGTAACAATGCATAACTGCTGTAAATTGAGCTTTTATAttgtattacatttttaaaaaaaa
>XM_036975240.1
AATTTcagccaagagagagaaagagagcgagagtgggaggaagagagagagaggggacctgACATATGGGCCTCAGATCACAGAGACTGCTATCAGGAGAGTGAAAAAgagcaagaaagaaagagagagagcgagaggtctACGtactagaggggagagagagagcgagagagagagagacaacgtgAACTGTACCCAGTCAGAGACATGAATCCCCTCAGCTGGATCGTTGTACTTCTCTTCCTGTTCTACGCTTCCTCTGGGAGCGCCGACGTCAACAGGCACCGCAGACAAGTCCCCACCGGTGGCCAACCAGGTGTGTGTGGCTATGGCAGGAGACTGGTGTGTTGCTATGGCTGGAGAAAGAACAGCAAGGGACAGTGTGAAGCTCAGTGTGAACATGGTTGCAAGCACGGAGAGTGTGCTGGTCCCAACGAATGCAAGTGTTACCCAGGATACACCGGAAAGATGTGCAACCAAGATCTGAATGAGTGTGGCCTGAAGCCTCGCCCCTGTGAGCATCGCTGTATGAACACCCACGGCAGCTACATCTGTTACTGCCTCAACGGATACACTCTGATGCCTGATGGCTCCTGTACCAactcccGGACATGCTCCCTGGCTCACTGTCAATATGGCTGTGAGGATGTACAGGGGGAGATCCGTTGTCTCTGCCCGTCTGCGCGGCTGCAGCTAGGGCCAGACCAGAGAACCTGTGTGGATATTGATGAATGTGTAACAGGAAAGAACCTGTGCCCATACAACAGGCAGTGTGTCAACACGTTTGGCAGCTACTACTGCAAGTGTCAGAATGGCTATGACCTGAAGTATATCAATGGCAAATATGACTGTGTAGACAATGACGAGTGTGCCGCCAACACACACAAGTGCAGCCACCGCGCAGTCTGTCTGAACACTCAGGGATCCTACAAGTGCAAGTCTATCCCAGAGTCCCCAGTGAGGCTGCCAGGGAAGCTGGACAAAGAGCAGATCAAGAACGTCATCCCCGAGCCCAAGGTGACCGTCCCCCCTCAGATCCGCTTGCAGCCCTTCGACTATGACGGGGAGACCTACATGGGTGGCTCAGAGGAGGTGGGCCAGGTGGGCTTTACTGATGtagggaaggaggaagaagaggaagatgaggaggagacagATGTGGACAACAAGCTTAATTCAAGGGGAGATGTTTTCATTCCAGAGGACTTTGAGTCCGTATTTGGTCCTGCAACGGATGTCAAAGAGATCGAAATAGCTCTAGGACAGGAAGAGTTCTTCATGGACTGCAACTTCGATCAGGGCGTGTGTGAGTGGGTGCAAGACAAGGACGATAGCTTTGACTGGAGCGTGTCCTACCATGAAAATGGTATGGAGTACTACATGGCTATGAGTGGTCTTCTGGGAGAGAAGAAGGACCAGGCCAGGCTAAAGCTGCTCCTCAGTGACCGGGCCCAGCAGGGAGGCTTCTGCCTCACCTTCAACTACCGCGTGATGGGCAGCCAGGTGGGCACGCTGCGGGTGCTGTTGAACAACAGCACCGAACTTGTGTGGGAGCAGAGCAGCAGCCGGAGTCAGGATTGGCAGACAGAACTGCTCACTGTAGCCTGGAAGAACCAGGCCCCAGAATCTATCATCTTTGAAGCTGAACGTGGGAATGGAGTTGGGGGAGAGATTGGGCTGGACAACGTGGTGCTGACCTCAGGCTACTGTCAAGGGGAAGACACAGCCATCTTTTAAACTGTGAACTCTGAACCTGTAGAAATCAGTCCAGTGTGGTTGACACAGACCTCAGAGGCAGAGCTAGCATCAGTATCTCCCTTTAGTCTACTCTTTTTGGAGAGCAGACACATCTTCCTAAAACCCAAACTAAGGGTGtatttttttttgctgtactgtacaACAAGTATTAAGAAAAATGTGTATTTGCAGAATGTTTGGGAGTTCAGCCGTCCACATAGGAAAGCGTTGCTGAGGGATTGAGCATCATTGGTATGTGCAGGGATTTCATCTGCAAGTTTACAAGCTTTTCCTTTCATTTGAGCCACCAAGCCAAAGAGAGTAGTGTCCACAAATAAATGATCCACTACATACAGTTCCGTTTTTCAATAATGTTCAcaaatgtttttaaatatattCAATTATTTTCACATAAATGGCAGGATACGGCAGGCTtatctacaacaacaaaaaaacattatatTGTGTTGCTTTTTATTTTTCTAAGTGACATTTTGCAGTTAGctgcaatatataaaaataagaCTTGTGACATGTAGTTAAATGAACCCTAAATGTTAATATCAGGTTCATCAAGAAGTCTTCCCTTGAACCCTACATGCTTTATAATCATAGTACGTGTATGTAACAATGCATAACTGCTGTAAATTGAGCTTTTATAttgtattacatttttaaaaaaaa

Function

NR:

description
PREDICTED: epidermal growth factor-like protein 6

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036975238.1 False 2454 mRNA 0.48 12 77084253 77102682
XM_036975239.1 False 2449 mRNA 0.48 12 77084253 77102686
XM_036975240.1 True 2421 mRNA 0.48 12 77084253 77102688

Neighbor

gene id symbol gene type direction distance location
LOC110520611 rab9a coding downstream 1602 77078738 ~ 77082651 (-)
LOC110520607 NA coding downstream 201744 76881490 ~ 76882509 (-)
LOC110520605 LOC106586805 coding downstream 215253 76866230 ~ 76869000 (-)
LOC110520604 LOC106586822 coding downstream 226790 76520204 ~ 76857463 (-)
LOC118944635 NA coding downstream 913134 76160117 ~ 76171119 (-)
LOC110520613 NA coding upstream 47203 77149891 ~ 77151879 (-)
LOC110520614 LOC100302030 coding upstream 49560 77152248 ~ 77164446 (-)
tlr7 LOC106586812 coding upstream 61954 77164642 ~ 77173237 (-)
LOC110520616 LOC106586811 coding upstream 72394 77174734 ~ 77245420 (-)
LOC110520620 LOC106586837 coding upstream 423782 77526470 ~ 77538361 (-)
G299327 NA non-coding downstream 45351 77033186 ~ 77038902 (-)
G299328 NA non-coding downstream 46296 77036846 ~ 77037957 (-)
G299319 NA non-coding downstream 62129 77021728 ~ 77022124 (-)
G299292 NA non-coding downstream 95428 76988368 ~ 76988825 (-)
G299291 NA non-coding downstream 95938 76987862 ~ 76988315 (-)
G299373 NA non-coding upstream 29968 77132656 ~ 77133062 (-)
G299445 NA non-coding upstream 171613 77274301 ~ 77274642 (-)
G299446 NA non-coding upstream 172012 77274700 ~ 77274906 (-)
G299024 NA other downstream 296522 76782843 ~ 76787731 (-)
G298192 NA other downstream 917852 76166003 ~ 76166401 (-)
G298131 NA other downstream 1027247 76055121 ~ 76057006 (-)
G298065 NA other downstream 1121179 75960547 ~ 75963074 (-)
G296315 NA other downstream 2844458 74239187 ~ 74239795 (-)
pknox1.1 pknox1 other upstream 733794 77832447 ~ 77844072 (-)
LOC110520626 ndufv3 other upstream 741979 77844666 ~ 77850842 (-)
G300200 NA other upstream 825798 77928486 ~ 77983204 (-)
G300251 NA other upstream 931797 78034485 ~ 78035018 (-)
G300470 NA other upstream 1191095 78293783 ~ 78294220 (-)

Expression


Co-expression Network