XLOC_021738


Basic Information

Item Value
gene id XLOC_021738
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 27870739 ~ 27872705 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044834
GTCAACTGTAACGCCCCTCTCCAGAACTCTACGCAGGGCCGCAGCATTGTTCTTGGCACAGGCTTGGTACAAGGTGTTGGCAGGGCCTCCACTGGCATCTTCCCGCTCATAGTTCGGGAGCACGGAGTCATCAGAGAGCACACTCCCTGAGTCTGAATCATTCTCCGAAACTGACAGCTCAGAGGCATCCTCGTCTGGACCCGAGCCCAGATCTGGATCCTCCTGCACCGCGACTTTAACCCCAGCCATCTGGCCAGCACGAGCCAGGACTCACACGCTCAGCAGGCACTtcgtcatcatcatcttcatcctcacTGCTTCCTCTCTGAAGTCTATGACGTGGAAGAGCAGCAGATTACACCCAGAAAGAATGAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044834 True 376 lncRNA 0.56 2 27870739 27872705

Neighbor

gene id symbol gene type direction distance location
XLOC_021737 kmt2d coding upstream 76862 27778670 ~ 27793877 (+)
XLOC_021736 kmt2d coding upstream 101746 27756984 ~ 27768993 (+)
XLOC_021735 dhh coding upstream 121677 27740592 ~ 27749062 (+)
XLOC_021734 lmbr1l coding upstream 143227 27703749 ~ 27727512 (+)
XLOC_021733 rps26 coding upstream 193223 27675581 ~ 27677516 (+)
XLOC_021739 NA coding downstream 39374 27912079 ~ 28007307 (+)
XLOC_021740 slc26a10 coding downstream 205248 28077953 ~ 28091109 (+)
XLOC_021741 c1galt1a coding downstream 219378 28092083 ~ 28136739 (+)
XLOC_021742 NA coding downstream 267054 28139759 ~ 28277430 (+)
XLOC_021743 birc5b coding downstream 450281 28322986 ~ 28325846 (+)
XLOC_021731 NA non-coding upstream 354466 27508867 ~ 27516273 (+)
XLOC_021724 CT573349.1 non-coding upstream 941881 26928743 ~ 26928858 (+)
XLOC_021722 NA non-coding upstream 1245606 26591124 ~ 26625133 (+)
XLOC_021714 AL845287.1 non-coding upstream 1875598 25995027 ~ 25995141 (+)
XLOC_021691 BX957326.2 non-coding upstream 3309866 24556455 ~ 24560873 (+)
XLOC_021745 NA non-coding downstream 517964 28390669 ~ 28420584 (+)
XLOC_021747 dre-let-7g-2 non-coding downstream 663656 28536361 ~ 28536457 (+)
XLOC_021748 dre-let-7h non-coding downstream 663960 28536665 ~ 28536778 (+)
XLOC_021750 BX664745.1 non-coding downstream 742122 28614827 ~ 28614942 (+)

Expression


Co-expression Network