tlr7 (LOC106586812)


Basic Information

Item Value
gene id tlr7
gene name LOC106586812
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 77164642 ~ 77173237 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021598013.2
TTGTCCTTCGTTCCATCAGCCTGTTGTTTTCATGTTTTCACATGAACATTTTATCGTTCTTAGTACTCCTTTTATTTTACAGTAAGAGAGAACTGAACCGTGAGAACTTATCCACACAAACATTGATCTGAACAATACTGTCTCACATGATGAGGTCAGAATGTGCATCTTTCCACATGTGTGGGGTGATACTGCTGGGCCTGTGGTGCTCCTCTTTGCTGGAAGCTGGAAGCTGGTACCCCAAAACCCTACCCTGTGACGTCACCCTGGCCAGCAACAACACCATGGTCAACGTAGATTGCACTGAGAGAGGACTTCTAGAGGTCCCAAAGGACATCCCCAGAAACACCACCAACCTGACCCTCACCATCAACCACATCCCTCACATTAACTCAACGTCCTTCCAGGGCCTGGAGAACCTCACCGAGATCGACATGCGCTGTAACTGCGTGCCCATCAAGATCGGCCCCAAGGACCGCATGTGCACAGAGAGTGTGACTATCAAGACGAACACCTTCAAAGACCTGAGGAATCTGAAGGCTCTGTATTTGGATGGGAATCAGCTTTCCACCATCCCAAAGGGTCTCCCTCCGAACCTCATTCTGCTCAGTCTAGAGGTGAATAAAATATATACCATTCTGAAAACGAACCTCTCTGACATCACTAACGTACAGATTCTTTACCTGGGTCAAAATTGTTACTATCGTAACCCATGTAATGTTTCCTATCAAATTGAGGAGGGAGCGTTTTTACAGCTTGGTAACATGACTCTCCTATCCCTCAAGTCAAATAACTTATCCTACATTCCCCCAAGATTACCGACAAGTCTCAGAGAGTTGTATCTCTATAATAACAAGATTGAAATGGTTACTGACAAAGATTTTCATAACTTAACCCAATTGGAGATACTTGACCTGAGCGGAAACTGCCCACGCTGTTACAATGCACCGTTTCCTTGTATTCCGTGTCCTAACAATTCACTTCAGATAGACAAAAACACCTTTAAAACGTTGACCAAACTGAGGATACTACGCCTGCATAGTAACTCCCTGACGTATGTGCTTAGAGAGTGGTTTCAGAACTGTAAAGAGCTGCGAGTACTTGATCTCTCAACCAACTTTTTAGCTCGAGAGATAGCATTTACTTACTTCCCACGAGCTCTACCCAACCTGGAAGAACTGGACCTGTCTTTTAACTACGAGCTGCAGAGGTATCCAGCTACACTGCACCTTAGTTCCTCATTTTCCTCCCTGAAATCCTTGAAAGTACTCCGCATCAGGGCCTTCGTCTTCCAGCAACTCACCCTCGAAGACATCAGCCCACTGATTCATCTAAAGAACCTGGAGGTCATTGACTTGGGCACCAACTTCATCAAAATAACCAACCTCAGCATTCTAATGGAACTGAAAAGCTTCAAAATAATAAATTTATCTGACAACAAAATATCATCCCCCTCTGAAAGTGGTCAGTCTGTTGCCTTTTCAGGAGGAGAAGCCATACATGGCTCCCCAATGTCAGATTCTGGACATAACAGCAATGGAGAAGTGAGAGAGATTCATTATTTTAGATACGATGAGTACGCTCGCAGCTGCAAATACAAGGACAAGGAGGATGGGACGCTGAATTCATTCGTCAAAACCCAGTGCAGCCAGTTTGGAAAAACCCTGGATATCAGCAGGAATAATATATTTTTCCTTCACTCCAGATTCTTGAACCTTGCTGACCTTAGATGCCTAAATCTCTCTGGAAATGCAATGAGCCAAAGTCTAAATGGTTCTGAGTTTACTTTCCTCACTAACTTACAGTATCTTGACTTCTCATTTAATCGTCTGGACCTTCTCTATTCCTCAGCGTTTCAGGAACTGAGAAGTTTAGTTATCTTAGACATAAGCAATAACAACCATTACTTTGAATCAGAGGGTTTGACCCACATGCTTAATTTCACAAAAAATCTGACCAATCTGAAGATATTACTAATGAACTATAACAAGATTTCTACATCCACCAACACAGAGCTGGAAAGTCTCTCTCTGGAGAAGTTAGAGTTCAAAGGTAACCGTTTAGATATGCTTTGGAGAGATGGTGATACAAGATACATCGACTACTTCAAAAAACTGCTAAATCTGAGGGTCCTAGACATCTCTCACAACAACCTCAACTTCATCCCTCAGCAAGTCTTCCAAGGCCTGCCAGACAAACTCACTAATctctacatcaacaacaacagattGAAGATATTTAGTTGGGAGAAGCTGATTATTCTTCAGTACTTAGAGGTCTTAGATCTCAGTAGTAATAGCATATCAACAGTTCCCCCAGAGCTCTCCAACTGCACCAAATCTCTCAAGACTCTCCTCTTACGCAAAAATCAAATATCCAAACTCTCTACGTATTTCCTCAAGGACGCCTTTAGTTTGAAGAATCTGGATCTCAGCTTCAATAACATTCAAAACATTGAGCAGACCAGCATCCCTGATGATGTTGTCGATCAAATGGACACGTTAGTCCTGAACAACAACAAGTTCATGTGCAACTGTAACGCCCTCATGTTTGTGATGTGGCTGAACCGCACCATGGTGAACATCCCCAGACTGGCCACCGCTGTGACCTGTGCTGCTCCAGGAGCCCAGAGGGGTCATCCGGTCATCTCCCTGGACCTAGAACTGCAGGCCTGCCAGCATAACTACCTATCCATCATCCTTTACATCCTACTCACATCCCTGGTGCTCAGCTTCATCGCCCTCTCCATCTCCAGCCACCTCTTCCTCTGGGACGTGTGGTACCTCTACCACTTCCTCCAGGCCAAGTTCAAAGGCTACAGACGCCTGTCCTCGCCGAGCACTGCCTACGACGCCTTCGTGGTATTCGACAAGAAGGACCCGGAGGTATCTGAGTGGGTGCTGAAGGAGCTGCTTGTTCAGCTGGAGAACCAAGGGGACCACCCCTTACAGCTGTGTCTGGAGGAACGAGACTGGATCCCTGGCTGCCCCCTGATCGACAACCTGTCCCAGAGCATTCACCAGAGCAAGAGGACCGTGTTCATACTGACGAACAAGTACATCAAGAGCGGGGACTTCAAGACCGCATTCTACATGGCCCATCAGCGACTTATGGATGAGAGAGATGATGTGATTGTCTTGATTTTCCTGGAAAAAGTCCCCAGTCACTCAAAATACCTGAGACTCAGGAAGAGGTTGTATAGGCGGTCAGTGATGGAGTGGCCAACAAATCCTCAAGCGCAGCAATACTTTTGGTTTAGCCTAAGGAGTGTACTGGTAACAGACAGTCAAAAACAATACAGTAATCTCTTCAAGGAGACTCTTTGAAAAAGGACAAACACAATGATTTTTCGCCATTTGTTAAGAATGCTTAGCATTGTCCTTTTTTTGTGATTGTGTAATGATTGTGTAATCATTGGGTAATGCCATTAATGACAAAAAGAGGGAAGCAAACCAATGGAGAACTTCCTCAATTAATCTATGAAGATTCTGTTTGATTTAGCTCAGATGGCGGGATGGGAATCTGTGGCTATGATGCCAGACAGTCAGAGACACTCAAAAACAATACAGTAATCTCTTCAAGAAGATTCTTTGAAATGTTACACTTAGAATACAccttacccactgggcacacactggttgaatcaacgttgtttccacgtcatttcattgaaatgacatggaaacaagaTGGAAtggacgttgaattgacatcagTGCCCAGTGTGTAGTGTTGATCTTTGAATGTGGTGATTGTTGTAAATTGTAAATTGTTGTTAAACGCTCTGATCACCTGTgataattagctatctagcacgCTCTAATCACCTGTgataattagctatctagcatgctctgaTCACCTGTGACAATTATCTTAAAGATGGGTTTTAAGGTGTACCGTAAATGTAATGTATCTGGTTTTAAGGTTTACAGTAAATGTAATGTATCTGGTGAGAATGTTTAGATATGAATTTTCATCTCTAATACTGACTGATTATGTTTGCTGTACTGCAATGCTTATAAATATACTGTCTCAATCTCCTATCCTGCTGCAGAGAGTAAGGTAAC

Function

NR:

description
toll-like receptor 7

GO: NA

KEGG:

id description
K05404 TLR7; toll-like receptor 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021598013.2 True 4070 mRNA 0.44 2 77164642 77173237

Neighbor

gene id symbol gene type direction distance location
LOC110520614 LOC100302030 coding downstream 196 77152248 ~ 77164446 (-)
LOC110520613 NA coding downstream 12763 77149891 ~ 77151879 (-)
LOC110504825 LOC106586814 coding downstream 61954 77084253 ~ 77102688 (-)
LOC110520611 rab9a coding downstream 81991 77078738 ~ 77082651 (-)
LOC110520607 NA coding downstream 282133 76881490 ~ 76882509 (-)
LOC110520616 LOC106586811 coding upstream 1845 77174734 ~ 77245420 (-)
LOC110520620 LOC106586837 coding upstream 353233 77526470 ~ 77538361 (-)
LOC118944720 LOC106581911 coding upstream 394119 77567356 ~ 77569192 (-)
LOC110520621 LOC106586835 coding upstream 399922 77573159 ~ 77577004 (-)
pknox1.1 pknox1 coding upstream 659210 77832447 ~ 77844072 (-)
G299373 NA non-coding downstream 31580 77132656 ~ 77133062 (-)
G299327 NA non-coding downstream 125740 77033186 ~ 77038902 (-)
G299328 NA non-coding downstream 126685 77036846 ~ 77037957 (-)
G299319 NA non-coding downstream 142518 77021728 ~ 77022124 (-)
G299445 NA non-coding upstream 101064 77274301 ~ 77274642 (-)
G299446 NA non-coding upstream 101463 77274700 ~ 77274906 (-)
G299676 NA non-coding upstream 269762 77442999 ~ 77446805 (-)
G299690 LOC106586808 non-coding upstream 295844 77469081 ~ 77474433 (-)
G299024 NA other downstream 376911 76782843 ~ 76787731 (-)
G298192 NA other downstream 998241 76166003 ~ 76166401 (-)
G298131 NA other downstream 1107636 76055121 ~ 76057006 (-)
G298065 NA other downstream 1201568 75960547 ~ 75963074 (-)
G296315 NA other downstream 2924847 74239187 ~ 74239795 (-)
LOC110520626 ndufv3 other upstream 671430 77844666 ~ 77850842 (-)
G300200 NA other upstream 755249 77928486 ~ 77983204 (-)
G300251 NA other upstream 861248 78034485 ~ 78035018 (-)
G300470 NA other upstream 1120546 78293783 ~ 78294220 (-)

Expression


Co-expression Network