LOC110520621 (LOC106586835)


Basic Information

Item Value
gene id LOC110520621
gene name LOC106586835
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 77573159 ~ 77577004 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021598023.2
CTTCCGCCACGGCAGGATGTGGAGCTGTGTGGAAGGAAAGCGGGAGGCAACAAGCGCGCCTGCTTGACTTTCAGCACAGTTCAGAGAAGCTGATGTTGTTGCTGTTGAGAGGAGGCATTTTCACCATTTTGAGGTGATCTAATCTGTAAAAGTGAAGCGCTTGGCTCTGTTAAACTAACCAACTAACCTGCGGGCTTTGAAAATGATGCGTGGCATTTTAACAGGTTGGCATCGTTGGATTTTTGGATTCATAACACTAGAAATGTTATTTGTCTCCCTGGCTGAGTCTGAGGGAAATACTCTGAAATACCAGACCAACGAGGAGGGAAGTCCAGGAACAGTGATCGGAAACCTGGCCAAGGACATGTCCTTGAGTCGCTCTTTTAGCTCCAAGACTAATTTTAGAATGATGAAACAATTCAACAATTCTTTTATCAGGGTGAGAGAAACCGATGGGGAGCTTACTGTCGGGGAAaggattgacagagagagaatctGCAGGCACACTTTACAGTGTCTCATCACTTTTGATGTTGTCAGTTTTTCAAAAGAGAGGTACAATTTGATTCATGTCGAGGTGGAGGTAAAAGACATTAATGATAACTCTCCGGAGTTTCCAAAAAAGGAATCTACAGTGGAGATCTCTGAAAATTCTGATGTGGGGTTCCGTATTCCTTTGGACCCAGCCGAGGACGCAGACGTCGGATCAAACTACATCCAAAGCTATCAAATTTCTGTCAACAGTCATTTTTCCATTGATGTGCTTTTGAGAGCGGATGGGGTTAAATATGCGGAGTTGGTGCTAATGAAAGAGTTAGACAGGGAGACTCAGTCATCTTATGTGATGCAGCTTATTGCCACCGACGGAGGAAACCCATTTAACTCGGGTTCAACAAAAATAACCATAACAGTGACAGACTTCAATGACAACCGTCCTGTTTTTGACCAGAATAATTTCTCGGTCACTTTGCCCGAGGACGCACCGGTTGGATTCGTTTTATTGGACTTAAATGCAGTTGATCCAGATGAGGGTTTAAACGGAGAGGTGGTCTATGGATTCGGAAAACAGGTTTCTGCGGAGATCCGAGCACTTTTCGAAGTGTACAGTAAATCCGGGCGCCTAACGCTCAAGAACCCAGTGGATTTTGAGACCAAGAAAACATATGAGTTAGACGTGCAGGCGACTGATCTTGGAGCCAACCCGATCCCCGCTATCTGTAAAATAATAATTAATGTCAAAGACGTTAATGACAATGCCCCAGAAATAAGTATTACGCCAATGACCTCCATCTCAACAGGCATTGCTTATATCAGCGAGACCGCAGACAAGGACAGCCTGGTGGCGCTGATCAGCACCGCGGACAGGGACTCGGGCGTTAACAGCCAGGTCCATTGCACCTTATATGGGCACGACCATTTCAAACTTAAACAGGCATATGAGGACAGCTACATGATTGTCACCGCAGCAGCCCTGGACAGGGAGAAGATAAGCGAGTATAATTTAACTGTGATGGCTGAAGATTTCGGGTCACCACCATTGAGAAAGatcacacaatacaccataaggCTAAGCGACGAGAATGACAACGCCCCACACTTTACTAAACATGTATATGAAGTTTCTGTTGTAGAAAATAATGCACCAGGGGCATATATTACAACCGTTGAGGCCAGAGATGCAGACTTGGGAACTAATGGCAAAATTACATacagactattagacagtgttaTAATGGGATCACCTGTCAACACGTTTGTATCTCTAAATGCAATCTCTGGTTCAATATATGCACTGAGAAGCTTCAACTATGAAGTCATGAAACATCTGGAGGTACACATCCAGGCAAGTGATGGGGGCTCACCCCAGCTTCAGAGCAGTGCCATCATCAATCTAAAAATAGTTGATCAGAATGACAACTCTCCTTCCATCATGGAGCCCATCCTTAATAAGGGATCTGCTGAGGTTTTCCTGCCCAAACATGCACCTGCAGGTTATGTTGTCACCCAGATAAAGGCCATGGATGCTGATGAAGGCATAAATGCCCAGCTGTCTTACAATATCACAGAGGGGGGACACTTGGGTTTCTCCATTAACAAGGTTACTGGGAAGTTACATGTGAGTTGTGAGCTGAACTACGACCTGTCTGAAACACTGAGAATCCTCGTGGCTGTCAACGACAATGGAACACCTTCTCTGACCTCCACGGCCACTATACACCTCACTCTCATCGAAGGCACCCCTCCCAGTGTTCCTGCTATGGTCCAAAATGACAGCGAGGAAGTCTTTGAATGGGACATGTCCATTGCCATTATCATTGCCTTAGCAGGGAGCTGCTCCCTCCTCTTGCTAGGCATCATCCTGATCACTACCACCTGCAGTCGACACAAACGGGAGAAGAGAGAGGCGGGATGCAATGACAAAGTAGACATACAAGATGTGGAGAAGGGGGAGAGCAGCCATATTGATTCATTGATCACCAACCACAAAAGCAATGCGTTTGATGTACACCCTTTTCCTGAGAAAGCACTGTTGGCCTCCAGCAACACAATAAAAACAGCCCCAGGTGATGGCAGACAAGAACAAGAGTGTGACTTTGACAACAGGATAATGGAGAGTAAATTAGAGGGTTATTCAACACTGCCCGGCTATAGGAAAGAAACCCTCCGACCCATAACCATATGGAAGGGCAACTCATTCACAACCATCTCAGCCAGAGATCCTCAGTTCAGTGGGAAGGACAGTGGGAAAGGAGACAGTGACTTTAATGACAGTGACTCTGACATCAGTGGGGATGGACACAAAAAAGACTCCCCACCGATAAACAGTCTCTGGGCCTGCACCAGTGAGTGTAAAATCCTAGGCCACTCAGACCGATGCTGGAGCCCCTCATCCTCTAGACCCAACACCAGCCTCTCCCACGGACCACACCTCTCAACCTTCTCCAAGACAGCCTCGTTGCCACGGAACACCCTGCAAAGAGACACCTACTACCAACAGGCTCACCTACCCAAGACCAACGGTCTGCAAAGCGTCTATGAAAAAGTCCAGCACCAAGAATTTGATTATATTCTGGTTTGTCCACCAACACCAGCCAGGATACTAGAGACTGGTGAGATATCCCTCCCGGAGTATGGACACTCTTAAATTAAATGGACAATAATCAAAGCTAATGTAATGAGTAATATGCATCTTTATATACTGTATAGCCTATTGTTTCAATGTTAGTGTTACGGTAAGTGTTTTGTGTGATTGTTCCCATATACTGTATGACTGTTTATTGTATAATGTGTCATATGCAAGATTTTATAAATTAAGAATATATTTTTTCATAATGATTCAATGTAAACTACAATTGTATTATACATTTGGAAGAGCATGTTTGAACTTTTACTATTTAAAAGCATGGCCATTGGACCTTTAGGCTGAAAGGACCCTTTGTCAAGTGGGAAACAATCAATATCAAAATATGAACATGTTTGTAGTAAATTTTGTCACTAAGTCGCACAAATAAACATTTGAAACCGAA

Function

NR:

description
protocadherin-8-like

GO: NA

KEGG:

id description
K16499 PCDHD2; protocadherin delta 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021598023.2 True 3527 mRNA 0.45 3 77573159 77577004

Neighbor

gene id symbol gene type direction distance location
LOC118944720 LOC106581911 coding downstream 3967 77567356 ~ 77569192 (-)
LOC110520620 LOC106586837 coding downstream 34798 77526470 ~ 77538361 (-)
LOC110520616 LOC106586811 coding downstream 327739 77174734 ~ 77245420 (-)
tlr7 LOC106586812 coding downstream 399922 77164642 ~ 77173237 (-)
LOC110520614 LOC100302030 coding downstream 408713 77152248 ~ 77164446 (-)
pknox1.1 pknox1 coding upstream 255443 77832447 ~ 77844072 (-)
LOC110520626 ndufv3 coding upstream 267662 77844666 ~ 77850842 (-)
LOC110520627 LOC106586850 coding upstream 275799 77852803 ~ 77860500 (-)
LOC110520629 pde9a coding upstream 296784 77873788 ~ 77933327 (-)
LOC110520630 slc37a1 coding upstream 357072 77934076 ~ 77964066 (-)
G299695 NA non-coding downstream 95754 77476623 ~ 77477405 (-)
G299690 LOC106586808 non-coding downstream 98726 77469081 ~ 77474433 (-)
G299693 NA non-coding downstream 99133 77472579 ~ 77474026 (-)
G299691 NA non-coding downstream 103015 77469787 ~ 77470144 (-)
G299676 NA non-coding downstream 126354 77442999 ~ 77446805 (-)
G299794 NA non-coding upstream 6039 77583043 ~ 77583359 (-)
G299795 NA non-coding upstream 7284 77584288 ~ 77584549 (-)
G299796 NA non-coding upstream 8446 77585450 ~ 77585707 (-)
G299809 NA non-coding upstream 31572 77608576 ~ 77609089 (-)
G299811 NA non-coding upstream 34269 77611273 ~ 77611547 (-)
G299024 NA other downstream 785428 76782843 ~ 76787731 (-)
G298192 NA other downstream 1406758 76166003 ~ 76166401 (-)
G298131 NA other downstream 1516153 76055121 ~ 76057006 (-)
G298065 NA other downstream 1610085 75960547 ~ 75963074 (-)
G296315 NA other downstream 3333364 74239187 ~ 74239795 (-)
G300200 NA other upstream 351482 77928486 ~ 77983204 (-)
G300251 NA other upstream 457481 78034485 ~ 78035018 (-)
G300470 NA other upstream 716779 78293783 ~ 78294220 (-)

Expression


Co-expression Network