XLOC_021741 (c1galt1a)


Basic Information

Item Value
gene id XLOC_021741
gene name c1galt1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 28092083 ~ 28136739 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043135
ATCAGTCAACACACTGAAAGCAGCTTAAGCTGGTTGCCAACCGCCGTTAATATCACACTAAGAAGAGAGCAGCTTGTTTCAAGTGACTGACCCAGGTGGGTTCCCTGAATGGTCATCATGAAAGCAGGCAGTTCAAGGTGCGCCTTCTCCCTGGGTTTCCTGGTGGGCAGCTGTAGTTTGTACGTCTTCCTGAGGCAGGTTTGGTTTGAGGAGAGCTTCAGCTGGCAGAGCAATGGCAGGAGCAGCCCGTCTCCACCAATAAGCCAAGAGCAAAACTCCTCCAACCTTACCTGGAGAGTTGAAGGATCTGCCCTGATCAACCTCAAGCATCCTAACCAGCCAGGAGAGGACGGTCACATAGCCGATGAGCTGTTCAGGAAAGTGCGAATCCTATGCTGGGTGATGACCGGACCCAGTAACCTCCAGTCAAAAGCTCAGCATGTGAAGAACACATGGAGTCGCCACTGTAACGTAGTACTATTTATGAGCTCAGAAGAAGACCGCAGTTTTCCCACAGTTGGCCTTGGCACTGGTGAAGGCCGAGACCAACTGTACTGGAAGACCATCCGTGCCTTCCACTACGCCCTAAAGAACCACGGCCATGAGGCAGACTGGTTCCTCAAAGCAGACGATGATACTTTCGTCGTTGTGGACAATTTGCGATGGATCCTGTCGAACCACACACCGGAGCAGCCTATATATTTTGGCAAGCGGTTTAAGCCGTACACCAAGCAGGGCTACATGAGCGGTGGCGCAGGGTATGTGCTCAGTAAAGAAGCTCTAAGAAGGTTTGTGGAGGGGTTTAGCACTAAAGTGTGCACTCATACTACACCGGTGGAGGATCTGGCGATGGGGCAGTGTCTGGAGAAAATGGGGGTCCTGGCTGGAGACTCGAGGGACTCGCTGCACAGAGAAACCTTTCATCCTTTTATTCCCGAGCATCATCTTACTGGAAAGTTCTCCAAGACCTTCTGGTACTGGAATTATTGCTATTACCCAATTGTAGAAGGCCCTCAGTGCTGCTCTGATCTGGCAGTGTCTTTCCACTACGTAGATCCTGTGCTCATGTACACCCTTGAATACTACACTTACCATCTGAGGCCGTTTGGCTACCAGCACCGCTACCAGCCTCCAGTGCCTGCTGTCCTGTCCTCACCGTCCCAAACTGTGAAAAGCACGACAGAAACTCAGAGATCAGAGGAGGGCACTAAAGAAAAACTAGCTTTAACAAACTCAGTGAATCCCAGAGCTGAAGAAGTAAAGACGACTGAAACAAGTAACAAAATCACAAATGCTGCCCAGGAGAGAAACACAACCCACAGAAGTGCAGGGTGATTGTGTTTCTTTTTTGAATGGAGTGTTCTGTAAATCTGAAATGAAGGGACTGACTAATGTGAATGGTAAAGTTGTGTAGCATTTTCTGTGTACTATAAGCATGTGTTGTATTGGGTACAGATTTCAGCTGATTACCAAAAGGTAAAGTGTCCTCCATTAACATTGGAAACCTTGGTTAACATGAAAAATTGCCTTTATTGATTAACCATTTGATCTTTTCATTTAACCTTGTGATCTTTTTCAtcttttcaacattaaaaacaCGTTAAAAATCA
>TCONS_00043136
GGAGTCACCCATGGCAACAAACCGGCCATTCCTCCAATCAAACATCTCAATGCAGCGGCCCGTGTGTGTGATGCCGCTGATGACACAGGCCGCTTGTTTGTTCATGACAGGGGTCTGTTGTCCGATAGCAACGCACAAATAAACAGGCCTGTTAACCATACGGTGAAATACAAGTCGTATACTAATTCGGGGCAAAATGCCTTGCACACACCCGGGCCTTTAACCGAAGAATCGAATCCCCGTGTTTACGTGCAGACGTCACAGTGCGCGCTCGAAAGCAACCTGACGGTCCCCTCTCCTCTCAAAACGCCGATACTGAGAAGAATAAAGACTGAAGGCATGAATCTGACCGGAGCTGGGATCATTCTGTGGGACTACGAGCGAAATGTACAGGGGAGATAAGGAATGCAAGTGACTGACCCAGGTGGGTTCCCTGAATGGTCATCATGAAAGCAGGCAGTTCAAGGTGCGCCTTCTCCCTGGGTTTCCTGGTGGGCAGCTGTAGTTTGTACGTCTTCCTGAGGCAGGTTTGGTTTGAGGAGAGCTTCAGCTGGCAGAGCAATGGCAGGAGCAGCCCGTCTCCACCAATAAGCCAAGAGCAAAACTCCTCCAACCTTACCTGGAGAGTTGAAGGATCTGCCCTGATCAACCTCAAGCATCCTAACCAGCCAGGAGAGGACGGTCACATAGCCGATGAGCTGTTCAGGAAAGTGCGAATCCTATGCTGGGTGATGACCGGACCCAGTAACCTCCAGTCAAAAGCTCAGCATGTGAAGAACACATGGAGTCGCCACTGTAACGTAGTACTATTTATGAGCTCAGAAGAAGACCGCAGTTTTCCCACAGTTGGCCTTGGCACTGGTGAAGGCCGAGACCAACTGTACTGGAAGACCATCCGTGCCTTCCACTACGCCCTAAAGAACCACGGCCATGAGGCAGACTGGTTCCTCAAAGCAGACGATGATACTTTCGTCGTTGTGGACAATTTGCGATGGATCCTGTCGAACCACACACCGGAGCAGCCTATATATTTTGGCAAGCGGTTTAAGCCGTACACCAAGCAGGGCTACATGAGCGGTGGCGCAGGGTATGTGCTCAGTAAAGAAGCTCTAAGAAGGTTTGTGGAGGGGTTTAGCACTAAAGTGTGCACTCATACTACACCGGTGGAGGATCTGGCGATGGGGCAGTGTCTGGAGAAAATGGGGGTCCTGGCTGGAGACTCGAGGGACTCGCTGCACAGAGAAACCTTTCATCCTTTTATTCCCGAGCATCATCTTACTGGAAAGTTCTCCAAGACCTTCTGGTACTGGAATTATTGCTATTACCCAATTGTAGAAGGCCCTCAGTGCTGCTCTGATCTGGCAGTGTCTTTCCACTACGTAGATCCTGTGCTCATGTACACCCTTGAATACTACACTTACCATCTGAGGCCGTTTGGCTACCAGCACCGCTACCAGCCTCCAGTGCCTGCTGTCCTGTCCTCACCGTCCCAAACTGTGAAAAGCACGACAGAAACTCAGAGATCAGAGGAGGGCACTAAAGAAAAACTAGCTTTAACAAACTCAGTGAATCCCAGAGCTGAAGAAGTAAAGACGACTGAAACAAGTAACAAAATCACAAATGCTGCCCAGGAGAGAAACACAACCCACAGAAGTGCAGGGTGA
>TCONS_00043137
ATCTCAATGCAGCGGCCCGTGTGTGTGATGCCGCTGATGACACAGGCCGCTTGTTTGTTCATGACAGGGGTCTGTTGTCCGATAGCAACGCACAAATAAACAGGCCTGTTAACCATACGGTGAAATACAAGTCGTATACTAATTCGGGGCAAAATGCCTTGCACACACCCGGGCCTTTAACCGAAGAATCGAATCCCCGTGTTTACGTGCAGACGTCACAGTGCGCGCTCGAAAGCAACCTGACGGTCCCCTCTCCTCTCAAAACGCCGATACTGAGAAGAATAAAGACTGAAGGCATGAATCTGACCGGAGCTGGGATCATTCTGTGGGACTACGAGCGAAATGTACAGGGGAGATAAGGAATGCAAGTGACTGACCCAGGTGGGTTCCCTGAATGGTCATCATGAAAGCAGGCAGTTCAAGGTGCGCCTTCTCCCTGGGTTTCCTGGTGGGCAGCTGTAGTTTGTACGTCTTCCTGAGGCAGGTTTGGTTTGAGGAGAGCTTCAGCTGGCAGAGCAATGGCAGGAGCAGCCCGTCTCCACCAATAAGCCAAGAGCAAAACTCCTCCAACCTTACCTGGAGAGTTGAAGGATCTGCCCTGATCAACCTCAAGCATCCTAACCAGCCAGGAGAGGACGGTCACATAGCCGATGAGCTGTTCAGGAAAGTGCGAATCCTATGCTGGGTGATGACCGGACCCAGTAACCTCCAGTCAAAAGCTCAGCATGTGAAGAACACATGGAGTCGCCACTGTAACGTAGTACTATTTATGAGCTCAGAAGAAGACCGCAGTTTTCCCACAGTTGGCCTTGGCACTGGTGAAGGCCGAGACCAACTGTACTGGAAGACCATCCGTGCCTTCCACTACGCCCTAAAGAACCACGGCCATGAGGCAGACTGGTTCCTCAAAGCAGACGATGATACTTTCGTCGTTGTGGACAATTTGCGATGGATCCTGTCGAACCACACACCGGAGCAGCCTATATATTTTGGCAAGCGGTTTAAGCCGTACACCAAGCAGGGCTACATGAGCGGTGGCGCAGGGTATGTGCTCAGTAAAGAAGCTCTAAGAAGGTTTGTGGAGGGGTTTAGCACTAAAGTGTGCACTCATACTACACCGGTGGAGGATCTGGCGATGGGGCAGTGTCTGGAGAAAATGGGGGTCCTGGCTGGAGACTCGAGGGACTCGCTGCACAGAGAAACCTTTCATCCTTTTATTCCCGAGCATCATCTTACTGGAAAGTTCTCCAAGAC
>TCONS_00043138
ATGGTCATCATGAAAGCAGGCAGTTCAAGGTGCGCCTTCTCCCTGGGTTTCCTGGTGGGCAGCTGTAGTTTGTACGTCTTCCTGAGGCAGGTTTGGTTTGAGGAGAGCTTCAGCTGGCAGAGCAATGGCAGGAGCAGCCCGTCTCCACCAATAAGCCAAGAGCAAAACTCCTCCAACCTTACCTGGAGAGTTGAAGGATCTGCCCTGATCAACCTCAAGCATCCTAACCAGCCAGGAGAGGACGGTCACATAGCCGATGAGCTGTTCAGGAAAGTGCGAATCCTATGCTGGGTGATGACCGGACCCAGTAACCTCCAGTCAAAAGCTCAGCATGTGAAGAACACATGGAGTCGCCACTGTAACGTAGTACTATTTATGAGCTCAGAAGAAGACCGCAGTTTTCCCACAGTTGGCCTTGGCACTGGTGAAGGCCGAGACCAACTGTACTGGAAGACCATCCGTGCCTTCCACTACGCCCTAAAGAACCACGGCCATGAGGCAGACTGGTTCCTCAAAGCAGACGATGATACTTTCGTCGTTGTGGACAATTTGCGATGGATCCTGTCGAACCACACACCGGAGCAGCCTATATATTTTGGCAAGCGGTTTAAGCCGTACACCAAGCAGGGCTACATGAGCGGTGGCGCAGGGTATGTGCTCAGTAAAGAAGCTCTAAGAAGGTTTGTGGAGGGGTTTAGCACTAAAGTGTGCACTCATACTACACCGGTGGAGGATCTGGCGATGGGGCAGTGTCTGGAGAAAATGGGGGTCCTGGCTGGAGACTCGAGGGACTCGCTGCACAGAGAAACCTTTCATCCTTTTATTCCCGAGCATCATCTTACTGGAAAGTTCTCCAAGACCTTCTGGTACTGGAATTATTGCTATTACCCAATTGTAGAAGGCCCTCAGTGCTGCTCTGATCTGGCAGTGTCTTTCCACTACGTAGATCCTGTGCTCATGTACACCCTTGAATACTACACTTACCATCTGAGGCCGTTTGGCTACCAGCACCGCTACCAGCCTCCAGTGCCTGCTGTCCTGTCCTCACCGTCCCAAACTGTGAAAAGCACGACAGAAACTCAGAGATCAGAGGAGGGCACTAAAGAAAAACTAGCTTTAACAAACTCAGTGAATCCCAGAGCTGAAGAAGTAAAGACGACTGAAACAAGTAACAAAATCACAAATGCTGCCCAGGAGAGAAACACAACCCACAGAAGTGCAGGGTGATT

Function

symbol description
c1galt1a Predicted to enable glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity. Predicted to be involved in O-glycan processing, core 1. Predicted to act upstream of or within O-glycan processing. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human C1GALT1 (core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1).

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0001822 kidney development biological_process
GO:0016266 O-glycan processing biological_process
GO:0016267 O-glycan processing, core 1 biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016263 glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061013-303 Predicted to enable glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity. Predicted to be involved in O-glycan processing, core 1; angiogenesis; and kidney development. Predicted to act upstream of or within O-glycan processing. Predicted to be integral component of membrane. Orthologous to human C1GALT1 (core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1).

Ensembl:

ensembl_id ENSDARG00000055585

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043135 False 1610 mRNA 0.47 4 28092083 28136739
TCONS_00043136 False 1664 mRNA 0.51 4 28125649 28136464
TCONS_00043137 False 1254 mRNA 0.52 3 28125692 28131574
TCONS_00043138 True 1229 mRNA 0.51 3 28128453 28136466

Neighbor

gene id symbol gene type direction distance location
XLOC_021740 slc26a10 coding upstream 974 28077953 ~ 28091109 (+)
XLOC_021739 NA coding upstream 84776 27912079 ~ 28007307 (+)
XLOC_021738 NA coding upstream 219378 27870739 ~ 27872705 (+)
XLOC_021737 kmt2d coding upstream 298206 27778670 ~ 27793877 (+)
XLOC_021736 kmt2d coding upstream 323090 27756984 ~ 27768993 (+)
XLOC_021742 NA coding downstream 3020 28139759 ~ 28277430 (+)
XLOC_021743 birc5b coding downstream 186247 28322986 ~ 28325846 (+)
XLOC_021744 zgc:153867 coding downstream 237719 28374458 ~ 28388513 (+)
XLOC_021745 NA coding downstream 253930 28390669 ~ 28420584 (+)
XLOC_021746 huwe1 coding downstream 357450 28494189 ~ 28568978 (+)
XLOC_021731 NA non-coding upstream 575810 27508867 ~ 27516273 (+)
XLOC_021724 CT573349.1 non-coding upstream 1163225 26928743 ~ 26928858 (+)
XLOC_021722 NA non-coding upstream 1466950 26591124 ~ 26625133 (+)
XLOC_021714 AL845287.1 non-coding upstream 2096942 25995027 ~ 25995141 (+)
XLOC_021747 dre-let-7g-2 non-coding downstream 399622 28536361 ~ 28536457 (+)
XLOC_021748 dre-let-7h non-coding downstream 399926 28536665 ~ 28536778 (+)
XLOC_021750 BX664745.1 non-coding downstream 478088 28614827 ~ 28614942 (+)

Expression


Co-expression Network