XLOC_021742


Basic Information

Item Value
gene id XLOC_021742
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 28139759 ~ 28277430 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044835
GCAGAACAGCCTTGCTGAATAATCGCAGACGCTCACCTCAGTTTGCATTTGTTAAAGAAGATTCCTCCGCTTGGTTCTGGGTACTCTTTCCTCCATTGACGTCCGGATTCTGACAACACAAATAACAGATAGATACATTTATGTGAGATGCAGATTGGGATGGAAATATTCTACCAGATATGATGCTTATTTCAAGAACAAACGGAGACCATCACTCCTAGTGTTCAGGGCAGACCCAGCTGCCTACAACAACAAGGGCAGGTCGGAGTTCCAAATAGCTGGTTTTCCCAAAGAGCCACATCCTGGGAGTATCAATGAGAACACCATAGGGCTGTTTATTTGGAGCATGCTAGGGTGGAGGGCCCTGCTGCTGAGAGGATGACGACAGGAAGAGGATGCCTTAACGGTAAACTCAGGACATCGTTCGCTATCAGCATTAGTGTTTATCAGGAAGGGAGAAAATCAAATGGGTAAGG
>TCONS_00044836
GCAGAACAGCCTTGCTGAATAATCGCAGACGCTCACCTCAGTTTGCATTTGTTAAAGAAGATTCCTCCGCTTGGTTCTGGGTACTCTTTCCTCCATTGACGTCCGGATTCTGACAACACAAATAACAGATAGATACATTTATGTGAGATGCAGATTGGGATGGAAATATTCTACCAGATATGATGCTTATTTCAAGAACAAACGATGTTTGGACTTCATCGCAGGATGTGTTGATCCACAGGAGACCATCACTCCTAGTGTTCAGGGCAGACCCAGCTGCCTACAACAACAAGGGCAGGTCGGAGTTCCAAATAGCTGGTTTTCCCAAAGAGCCACATCCTGGGAGTATCAATGAGAACACCATAGGGCTGTTTATTTGGAGCATGCTAGGGTGGAGGGCCCTGCTGCTGAGAGGATGACGACAGGAAGAGGATGCCTTAACGGGGCTGCTGCTTCCATCCATTTGCTAAGCTAATTTTATGGAAATGGCCCACGTCTTTTTACTCAAGCCGCTTTGCAGTTTCTCATCACAACACGTTTTAAGCCACAGGCCACATCTCAGTAAGACGGTGGAGGAGAGAGCAGTGCTGCTGTTATTTGGACCATTGATAGAGGACTTTGGAAAGAACCCAAAAGCTCTGGTCCTGAAAGCTTTTCAACACAATACTATAAACTGCCTCTGTGGCTCGAGCGGAAGACTATAGACACTTTAACTTGCATTTAATAGTGCAGGGGTTGGCGAACTATAATGCAAGCCAACACTGG
>TCONS_00044675
CTCAGTTTGCATTTGTTAAAGAAGATTCCTCCGCTTGGTTCTGGGTACTCTTTCCTCCATTGACGTCCGGATTCTGACAACACAAATAACAGATAGATACATTTATGTGAGATGCAGATTGGGATGGAAATATTCTACCAGATATGATGCTTATTTCAAGAACAAACGATGTTTGGACTTCATCGCAGGATGTGTTGATCCACAGGAGACCATCACTCCTAGTGTTCAGGGCAGACCCAGCTGCCTACAACAACAAGGGCAGGTCGGAGTTCCAAATAGCTGGTTTTCCCAAAGAGCCACATCCTGGGAGTATCAATGAGAACACCATAGGGCTGTTTATTTGGAGCATGCTAGGGTGGAGGGCCCTGCTGCTGAGAGGATGACGACAGGAAGAGGATGCCTTAACGTGTTTATCAGGAAGGGAGAAAATCAAATGGGTAAGG
>TCONS_00043139
CGCTTGGTTCTGGGTACTCTTTCCTCCATTGACGTCCGGATTCTGACAACACAAATAACAGATAGATACATTTATGTGAGATGCAGATTGGGATGGAAATATTCTACCAGATATGATGCTTATTTCAAGAACAAACGGAGACCATCACTCCTAGTGTTCAGGGCAGACCCAGCTGCCTACAACAACAAGGGCAGGTCGGAGTTCCAAATAGCTGGTTTTCCCAAAGAGCCACATCCTGGGAGTATCAATGAGAACACCATAGGGCTGTTTATTTGGAGCATGCTAGGGTGGAGGGCCCTGCTGCTGAGAGGATGACGACAGGAAGAGGATGCCTTAACGAAGACCGATTACACGGTGGGGAGCCAAAAGTGTAAGAATTAGCAGAGGAATCTTCGAACCACATAAACATGAAGCATGCACGGAGATGCAGATATATCAAGGAATTACTGGGTTAAATGATCACTATCTTCCAAGGTGATGGCATCTCA
>TCONS_00043140
AAGACGTCCCCAAATGACTATTCGCTTAAAGATAAACGGCAAACTATCAAGTTCATAACAGTCATCTAAAGGATAGATACATTTATGTGAGATGCAGATTGGGATGGAAATATTCTACCAGATATGATGCTTATTTCAAGAACAAACGAGCCACATCCTGGGAGTATCAATGAGAACACCATAGGGCTGTTTATTTGGAGCATGCTAGGGTGGAGGGCCCTGCTGCTGAGAGGATGACGACAGGAAGAGGATGCCTTAACG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000094837

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044835 False 476 lncRNA 0.46 5 28139759 28160364
TCONS_00044836 False 765 lncRNA 0.46 5 28139759 28277430
TCONS_00044675 False 443 lncRNA 0.46 5 28139795 28160364
TCONS_00043139 False 488 lncRNA 0.46 5 28139826 28249645
TCONS_00043140 True 261 processed_transcript 0.43 3 28140317 28148953

Neighbor

gene id symbol gene type direction distance location
XLOC_021741 c1galt1a coding upstream 3020 28092083 ~ 28136739 (+)
XLOC_021740 slc26a10 coding upstream 48650 28077953 ~ 28091109 (+)
XLOC_021739 NA coding upstream 132452 27912079 ~ 28007307 (+)
XLOC_021738 NA coding upstream 267054 27870739 ~ 27872705 (+)
XLOC_021737 kmt2d coding upstream 345882 27778670 ~ 27793877 (+)
XLOC_021743 birc5b coding downstream 45556 28322986 ~ 28325846 (+)
XLOC_021744 zgc:153867 coding downstream 97028 28374458 ~ 28388513 (+)
XLOC_021745 NA coding downstream 113239 28390669 ~ 28420584 (+)
XLOC_021746 huwe1 coding downstream 216759 28494189 ~ 28568978 (+)
XLOC_021747 dre-let-7g-2 coding downstream 258931 28536361 ~ 28536457 (+)
XLOC_021731 NA non-coding upstream 623486 27508867 ~ 27516273 (+)
XLOC_021724 CT573349.1 non-coding upstream 1210901 26928743 ~ 26928858 (+)
XLOC_021722 NA non-coding upstream 1514626 26591124 ~ 26625133 (+)
XLOC_021714 AL845287.1 non-coding upstream 2144618 25995027 ~ 25995141 (+)
XLOC_021748 dre-let-7h non-coding downstream 259235 28536665 ~ 28536778 (+)
XLOC_021750 BX664745.1 non-coding downstream 337397 28614827 ~ 28614942 (+)
XLOC_021755 CR381533.1 non-coding downstream 519996 28797426 ~ 28797548 (+)

Expression


Co-expression Network