LOC110520654 (LOC106586898)


Basic Information

Item Value
gene id LOC110520654
gene name LOC106586898
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 80979138 ~ 80984383 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036975309.1
GTTTACTGAATATTTCCCCTTTCAGTCTCTGTGGGGAGCAGGCTTGGCTACTAACTCTGTACTAGACAATTAAATTATGTATAAAAGTTTCAGAAACAATGCAAAATTGGACTGCAGAAACATTAAACGACAGCCAGAGCTTTGGAAGTTTTGGCAAATCTTGGGAAAAAGTAACACATCCTTATGATTGTTGTTCACAACCATTTGGGAAGCCTAATCTCAGCTTTTATCAGACAATCAGAAGACCGCTGAAGAAATGTCATATTTTATTTAAGAATTTTCTGAAGGGACCCTCTCGGATTTCCACCGTAGAAACAAGCTCATCTCTGGATGAGTGTAAAGCCATAATCAGAGAACTGGCCACCGAGCTACATCGGATATCAAAGTATCAAGATAATTTCAACACCAGCCACGAGGATGGCTACAGCCTGGCAGAGTGTCAACAGTTCATCCTACAATGGGCGGAGGAGTTGAGCATCTTACCAAAGATATCCGTGGGGCAAAGCAGGAGCTCACCAAAGCCCCTGCGTACCTGCTGGGAGGActatgaggtagaggagagaacaTCTCCAAAAGAGGCTGAGAGAAGACTGGCAGAAGCTCAGCGCATCATCTCAGGATGGGCTGCAGGACTACAAACACGAAAACAGGACTCAGTGTGTCCAGGAGAGGATGTCTGTTCAGTCCTGCAGGATCTGGAGGGACAGTGGAAGAGTGGGAAACTACCCAACATGCTCCCTGTCATGGACTTCATAATCTGGACTGTGTTACAGGAACAACCTAAAGAGGGCTCCATCCCAGAGCTGTGGCTCAAATCCAAGCAGAGGTTCAAACACTCAGGCTTCACCACAGTGATTCCTGAATCAGTATGGGACTGGATAAGCAAAGCATCAGTTGACATCCTCTTGGACCCTGAATCAGCCAATCCAGATTTCATAGTGTCCAACAATCAGAAACGTGTGAGAGTGGGCAAAATAATAGAGAGTAAACATGATCCTAGAGACGGATACCGTCACTGCCGCGCATCTCACAAGTATGACGGGTGGTGGTGTGCACTGGGAACACAGGGCTTTACCAAGGGTAGGCATTACTGGGAGGTGGGGGTGGACGGGAAGACAGACTGGAGGATAGGGATAGCTAAGGAGTCTGCACCAAGAAGAGGCTTCAGTCAACTGAACACATCAACAGGTTACTGGACACTACGGATGCAGATCAGTGGGCTGAAGGCTCTAACTGTTCCGGCTGTTGATATCAAGATTCCAGAAAATCTCAAGAAGATTGGGGTCTACCTTGACATGGAGGAGGGGCAGCTCTCCTTTTATGACGTTGTAAGACGCAGCCATATCTACACCTTCAATAACACGTTTTCTGAACAGGTTTATCCAGTCTTTGgcacagtagagacagacagagaccttaTCATACTGTAGTACACAgctaaatagaaaataaaagtcaCAGAAGTTATTGAGGATGTCTCATGACTAAGAACCACCCTAGACCACCCTAGACAACCGTAGACCACCCTAGACAACAGTAGACCACCCTAGACCAGTCTAGACAACCGTAGACCACCCTAGACAACCGTAGACCACCCTAGACCACCCTAGACAACCGTAGACCACCCTAGACAACAGTAGACCACCCTAGACAACAGTAGACCACCCTAGACAACAGTAGACCACCCTAGACCACCCTAGACAACCGTAGACCACCCTAGACAACCGTAGACCACCCTAGACAACCGTAGACCACCCTAGACCACCCTAGACAACTGTAGACCACCCTAGACAACAGTAGTCCACCCTAGACCACCCTAGACAACCATAGACCACCCTAGACAACAGTAGACCACCCTAGACAACCGTAGACCACCCTAGACAACCGTAGACAACCGTAGACCACCCTAGACAACAGTAGACCACCCTAGACAACCGTAGACCTCCCTAGACAACAGTAGACCCCCCTAGACAACCGTAGACCACCCTAGACAACAGTAGACAACCGTAGACCACCCTAGACCACCCTAGACCACTCTAGACAACCGTAGAGCACCCTAGACCACTCTAGACAACCGTAGACCACCCTAGACAACCGTAGACCACCCTAGACAACAGTAGACCACCCTAGACCAGTCTAGACAACCATAGACCACCTTAGACAGCAGTAGATCACCCTAGACCACCCTAGACAACCATAGACCACCCTAGACAACCGTAGACAACCGTAGACCACCCTAGACCACCCTAGACAACCGTAGACCACCCTAGACAACAGTAGACCACCCTAGACCACCCTAGACCACTCTAGACAACTGTAGAGCACCCTAGACAACCGTAGACAACCGTAGACCACCCTAGACCACCCTAGACCACCGTAGACCACCCTAGACCACCCTAGACAACCGTAGACAACCCTAGACCACCCTAGACAACCATAGACAACCGTAGACCACCCTAGACCACCCTAGACAAGCGTAGACCACCCTATACCACCCTAGACAACCGTAGACCACCCTAGACCACCCTAGACAACCGTAGACCACCCTAGACAACAGGCCATCATGTGATGACATCCCCATATTTTTAACATTGACATTTTGGCGAAATTACTCTGCCCATGATAGCACCAATTATgccacaaaaaaaacacagctaATTCCATACATGACATGGTGTATATAATATTTACTAACTTTGTTCTGTTCTCTTCCATCGCCAAAGCACAGCTAATTCCATACACAACATTGATCTTTGATCTGTTCTCTTCCATCGCCAAGCACAGCAGGTCGATGGTAATCCATAATGGTGACCATCTATTATCCTTAATCCAGTTAGAAATCAGCTGTTTGCTAGAGTCTATCTTCCTAAAGAGTGTCTGCATTATGATTAATGAAGCCAGATGTATCTTTCTTTATGACTTGGGAAGCTTTACTTTCTGAATTTGAATGATAATATGACATTAGATGTTTACTATAATTTCATAATTTGAGGTTAGCTACAGTAATAATTTTTAAATTTTTTCATACTTCCTCAATGAGTTTGTAAAGCACTGACGAAGCTACAGAAGATAAAAATGTTTGTTTATTCTTTGTTTATGCACTTTGCACTTTGCACTTTCTGTTATTCTTTCAAGTATGGATTAAACAGAGCATATTTTAGTA

Function

NR:

description
tripartite motif-containing protein 72-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036975309.1 True 3163 mRNA 0.46 11 80979138 80984383

Neighbor

gene id symbol gene type direction distance location
LOC110520653 LOC106586906 coding downstream 70789 80905040 ~ 80908349 (-)
LOC110518808 fam160a2 coding downstream 105014 80796995 ~ 80874124 (-)
hpxa hpx coding downstream 320478 80645997 ~ 80658660 (-)
LOC110520649 LOC106586884 coding downstream 425871 80551048 ~ 80553267 (-)
olig1 LOC106586885 coding downstream 453609 80524093 ~ 80525529 (-)
LOC110520656 LOC106586902 coding upstream 27715 81012098 ~ 81038367 (-)
si:dkey-69o16.5 pepe coding upstream 892238 81876621 ~ 81887719 (-)
slc23a3 LOC106586913 coding upstream 982747 81967130 ~ 81979522 (-)
LOC110510426 bin1 coding upstream 1009668 81994051 ~ 82040699 (-)
LOC118964332 NA coding upstream 1038452 82022835 ~ 82023180 (-)
G302826 LOC106586879 non-coding downstream 13908 80964355 ~ 80965230 (-)
G302777 NA non-coding downstream 128386 80850156 ~ 80850752 (-)
G302771 NA non-coding downstream 143232 80834394 ~ 80835906 (-)
G302765 NA non-coding downstream 160435 80817772 ~ 80818703 (-)
G302761 NA non-coding downstream 172248 80806168 ~ 80806890 (-)
G302848 NA non-coding upstream 18568 81002951 ~ 81003318 (-)
G302857 NA non-coding upstream 44858 81029241 ~ 81029724 (-)
G302862 NA non-coding upstream 56022 81040405 ~ 81040901 (-)
G302863 NA non-coding upstream 56976 81041359 ~ 81041942 (-)
G302866 NA non-coding upstream 61756 81046139 ~ 81046594 (-)
G302725 NA other downstream 256515 80721738 ~ 80722623 (-)
G302724 NA other downstream 257457 80720717 ~ 80721681 (-)
G302660 NA other downstream 295952 80680986 ~ 80683186 (-)
G302399 LOC106581475 other downstream 470841 80507935 ~ 80508297 (-)
LOC110520645 LOC106586879 other downstream 557993 80402867 ~ 80421221 (-)
G303663 NA other upstream 1037005 82021388 ~ 82022265 (-)
G303665 NA other upstream 1038446 82022829 ~ 82023451 (-)
pard3bb LOC106601765 other upstream 1313373 82297732 ~ 82586082 (-)
LOC110505453 LOC106586926 other upstream 1760861 82744854 ~ 82747738 (-)
G304204 LOC107714908 other upstream 1846987 82831370 ~ 82851751 (-)

Expression


Co-expression Network