LOC110510426 (bin1)


Basic Information

Item Value
gene id LOC110510426
gene name bin1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 81994051 ~ 82040699 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036975332.1
ACAGAGGGCTCCAAACTGCAGAAAGACCTGAGGGTCTACCTGGCGGCAGTACAAACGATGCACGAATCCTCCAAGAACCTTAAGGAGTGTCTGTCTGACATGTACGAGCCGGAGTGGTACGGCAAAGAGGATGTGGACTCCATCGTCGAGTGTAAATAGAGGCTTAGAGAAGTTGGGAAACAACGTTGAGGACACTGACGTTCTGTGGACAGACTTCCATCAGAAGCTTGTGGATAATGCTTTGATATCCATGGACACATACCTGGGGCAGTTCCCTGATATTAAGtctCGTATTGCAAAGCGTGACAGGAAGCTTGTGGACTACGACAGCGCCAGACACAACCACCTTTCGACCAATAAGGGGAAGAAAGGAAAGGAtgggagcatcaagatcaccaaGCCAGTGTCTCTGTTGGAGAGGGCCACTCCAGTTTGGGCTCAGGGCATCCTGTCAGCCCACAACATTGCTCAGAGTAACCTCTCTAGGAACCAGgcGGAGGATGAGTTGGAGAGAGCTCAGAAGGTGTTTGAGGAGATTAATGAAGATCTTCAGGAGGAACTGCCCTCACTATGGAACAGtCGTGTTGGCTTCTACGTTAGCACCTTCCAGAGTATGGCTGGCTTCGAGGAGAAGTTCCACAAGGAGATGGGGAAGCTGGACCAGAATCTGTACGATGTTCTTGTCAAACTGGAGAGGCAGGACATGTGTGGtGAGCTCCCCAGAGGAGCAAGTCCAGCCAATCACACTCTGAGTCCAGCCGTACCGCCTCCCATCCCTAAGTCCCCCTCCAAGCTGAGACCAGCGATGCCGCCGCGGCCTGAATCCAGCCCCTGTCGGGACATGAAACCAGAAAACATCATTAACCTGTTTGATGCTGCAGCTGCTCCTAACATCAGTGTTACATCCCCAACACAGGCGATATCGTGGGACACATGGGAGCCTGAGGAAACTCCTGCTCCACCAGAGGAGCCCCAGGACTGGGATGATGACGGTACCCTGCCGGTGCGTGCTGCTGGCTGTGGGGATGACGGTAAAGCTGCCACCACGGCAGGCTGGGATGATGATGGCTCTCTGCCTGTGAGGGTGGATGACTCCTGGGGGGACGATGGTGTTGCTGATGCCACTGCTTCCGCTGCTGTGGCCGAGTCTGAGGCTGCTGGCtgggatgatgatgaggagggggTGCCCCAGGCTGACACGCCCACAGCAGCTGCTACAGCACCTACTCCTACAGCCACAGCAGTAGAGGAGATTCCTGCTGTCGCAACAGTAGCAACCAATGGGGCTTCAGAGGCGGTAGAGATGCCGCCAGGATTCCTCTTTAAAGTGACCACCATGCATGACTATGCCGCTAATGACTCGGATGAGCTGGAGATGAAGGCTGGAGACATAGTGCTGGTTGTAGCCTTCGACAACCCAGAAGAACAGgatgAGGGCTGGCTGATAGGGATGAAGGAGGGAGACTGGACCCAGAATAAAGAGAGTGCCGTCAAAGGGGTGTTCCCTGAGAACTTTACCTCCAGGCTGTGAGAGAGGAGACACTTCCTCTCCTACTTTGACCACTCTCTCTTCCACAAGATACTctcttctctgacctctctcttcactctctctctctcttccctctttcttccctctctctattccctttctctctattccctctctctctccctctcttccctctcgcttccctctctcttccctctctcttccctctctctcccttccctctctctcttccctctgtctctctgcccgtGCCATCCTCCCTCCTAATTTTCTAACCTCTGGGATTGTAAAGTGTGATACTGTGATACTGTAGTCATTGGCAAGAGAAACAGCACTGCATAATCAACTGTCTGTTCTGTAACCATTTCTAGCATGGATCACACTGTAGGGTCAGATTACATCATCACACTGTAGGGTCAGATTACATCATCACACTGTAGGGTCAGATTACATCATCACACTGTAGGGTCAGAGTACATCACATCACACTGTAGGGTCAGATTACATCATATCACACTGTAGGGTCAGATTACATCATCACACTGTAGGGTCAGAGTACATCACATCACACTGTAGGGTCAGATTACATCATATCACACTGTAGGGTCAGATTACATCATCACACTGTAGGGTCAGAGTACATCACATCACACTGTAGGGTCAGATTACATCATCACACTGTAGGGTCAGATTACATCATATCACACTGTAGGGTCAGATTACATCATCACACTGTAGGGTCAGATTACATCATCACACTGTAGGGTCAGATTACATCATATCACACTGTAGGGTCAGATTACATCATATCACACTGTAGGGTCAGATTCCATCATATCACACTGTAGGGTCAGAGTACATCATATCACACTGTAGGGTCAGATTACATCATATCACACTGTAGGGTCAGATTACATCACATCACACTGTAGGGTCAGATTACATCACATCAAACTGTAGGGTCAGA
>XM_036975330.1
CCCGATACAATGGTTATTATCATCCACCGACTGACGAAACGGAAGGCTACACTAACGGAAGCTGGAGACCCGTCGCTTGGTCTATTCGGTACCCACAGACACCCGTTACGAAACGTTGTGACGGTGCTTCAGCCTAGAATAACGAGCGGTGACTATTTGTTTTTGTCGACGTTGATGTCTCTTCTTCTTTATCCGTAGGAGTTGTTAATTTTTTATTACATTGAATCGAGAGCTTATCGGGAAGACAAAATGGCTGAGATGGGTATGGGGAAGGGGGTTACTGCGGGGAAACTCGCTAGTAACGTGCAGAAGAAATTAACACGGGCCCAAGAGAAGGTTATGCAGAAACTGGGGAAAGCGGATGAGACCAGAGATGTTGCATTTGAGGAGGGAGTTATCAACTTCAACAAACAATATACAGAGGGCTCCAAACTGCAGAAAGACCTGAGGGTCTACCTGGCGGCAGTACAAACGATGCACGAATCCTCCAAGAACCTTAAGGAGTGTCTGTCTGACATGTACGAGCCGGAGTGGTACGGCAAAGAGGATGTGGACTCCATCGTCGAGGACACTGACGTTCTGTGGACAGACTTCCATCAGAAGCTTGTGGATAATGCTTTGATATCCATGGACACATACCTGGGGCAGTTCCCTGATATTAAGtctCGTATTGCAAAGCGTGACAGGAAGCTTGTGGACTACGACAGCGCCAGACACAACCACCTTTCGACCAATAAGGGGAAGAAAGGAAAGGAtgggagcatcaagatcaccaaGCCAGTGTCTCTGTTGGAGAGGGCCACTCCAGTTTGGGCTCAGGGCATCCTGTCAGCCCACAACATTGCTCAGAGTAACCTCTCTAGGAACCAGgcGGAGGATGAGTTGGAGAGAGCTCAGAAGGTGTTTGAGGAGATTAATGAAGATCTTCAGGAGGAACTGCCCTCACTATGGAACAGtCGTGTTGGCTTCTACGTTAGCACCTTCCAGAGTATGGCTGGCTTCGAGGAGAAGTTCCACAAGGAGATGGGGAAGCTGGACCAGAATCTGTACGATGTTCTTGTCAAACTGGAGAGGCAGGACATGTGTGGtGAGCTCCCCAGAGGAGCAAGTCCAGCCAATCACACTCTGAGTCCAGCCGTACCGCCTCCCATCCCTAAGTCCCCCTCCAAGCTGAGACCAGCGATGCCGCCGCGGCCTGAATCCAGCCCCTGTCGGGACATGAAACCAGAAAACATCATTAACCTGTTTGATGCTGCAGCTGCTCCTAACATCAGTGTTACATCCCCAACACAGGCGATATCGTGGGACACATGGGAGCCTGAGGAAACTCCTGCTCCACCAGAGGAGCCCCAGGACTGGGATGATGACGGTACCCTGCCGGTGCGTGCTGCTGGCTGTGGGGATGACGGTAAAGCTGCCACCACGGCAGGCTGGGATGATGATGGCTCTCTGCCTGTGAGGGTGGATGACTCCTGGGGGGACGATGGTGTTGCTGATGCCACTGCTTCCGCTGCTGTGGCCGAGTCTGAGGCTGCTGGCtgggatgatgatgaggagggggTGCCCCAGGCTGACACGCCCACAGCAGCTGCTACAGCACCTACTCCTACAGCCACAGCAGTAGAGGAGATTCCTGCTGTCGCAACAGTAGCAACCAATGGGGCTTCAGAGGCGGTAGAGATGCCGCCAGGATTCCTCTTTAAAGTGACCACCATGCATGACTATGCCGCTAATGACTCGGATGAGCTGGAGATGAAGGCTGGAGACATAGTGCTGGTTGTAGCCTTCGACAACCCAGAAGAACAGgatgAGGGCTGGCTGATAGGGATGAAGGAGGGAGACTGGACCCAGAATAAAGAGAGTGCCGTCAAAGGGGTGTTCCCTGAGAACTTTACCTCCAGGCTGTGAGAGAGGAGACACTTCCTCTCCTACTTTGACCACTCTCTCTTCCACAAGATACTctcttctctgacctctctcttcactctctctctctcttccctctttcttccctctctctattccctttctctctattccctctctctctccctctcttccctctcgcttccctctctcttccctctctcttccctctctctcccttccctctctctcttccctctgtctctctgcccgtGCCATCCTCCCTCCTAATTTTCTAACCTCTGGGATTGTAAAGTGTGATACTGTGATACTGTAGTCATTGGCAAGAGAAACAGCACTGCATAATCAACTGTCTGTTCTGTAACCATTTCTAGCATGGATCACACTGTAGGGTCAGATTACATCATCACACTGTAGGGTCAGATTACATCATCACACTGTAGGGTCAGATTACATCATCACACTGTAGGGTCAGAGTACATCACATCACACTGTAGGGTCAGATTACATCATATCACACTGTAGGGTCAGATTACATCATCACACTGTAGGGTCAGAGTACATCACATCACACTGTAGGGTCAGATTACATCATATCACACTGTAGGGTCAGATTACATCATCACACTGTAGGGTCAGAGTACATCACATCACACTGTAGGGTCAGATTACATCATCACACTGTAGGGTCAGATTACATCATATCACACTGTAGGGTCAGATTACATCATCACACTGTAGGGTCAGATTACATCATCACACTGTAGGGTCAGATTACATCATATCACACTGTAGGGTCAGATTACATCATATCACACTGTAGGGTCAGATTCCATCATATCACACTGTAGGGTCAGAGTACATCATATCACACTGTAGGGTCAGATTACATCATATCACACTGTAGGGTCAGATTACATCACATCACACTGTAGGGTCAGATTACATCACATCAAACTGTAGGGTCAGA
>XM_036975331.1
CCCGATACAATGGTTATTATCATCCACCGACTGACGAAACGGAAGGCTACACTAACGGAAGCTGGAGACCCGTCGCTTGGTCTATTCGGTACCCACAGACACCCGTTACGAAACGTTGTGACGGTGCTTCAGCCTAGAATAACGAGCGGTGACTATTTGTTTTTGTCGACGTTGATGTCTCTTCTTCTTTATCCGTAGGAGTTGTTAATTTTTTATTACATTGAATCGAGAGCTTATCGGGAAGACAAAATGGCTGAGATGGGTATGGGGAAGGGGGTTACTGCGGGGAAACTCGCTAGTAACGTGCAGAAGAAATTAACACGGGCCCAAGAGAAGGTTATGCAGAAACTGGGGAAAGCGGATGAGACCAGAGATGTTGCATTTGAGGAGGGAGTTATCAACTTCAACAAACAATATACAGAGGGCTCCAAACTGCAGAAAGACCTGAGGGTCTACCTGGCGGCAGTACAAACGATGCACGAATCCTCCAAGAACCTTAAGGAGTGTCTGTCTGACATGTACGAGCCGGAGTGGTACGGCAAAGAGGATGTGGACTCCATCGTCGAGGACACTGACGTTCTGTGGACAGACTTCCATCAGAAGCTTGTGGATAATGCTTTGATATCCATGGACACATACCTGGGGCAGTTCCCTGATATTAAGtctCGTATTGCAAAGCGTGACAGGAAGCTTGTGGACTACGACAGCGCCAGACACAACCACCTTTCGACCAATAAGGGGAAGAAAGGAAAGGAtgggagcatcaagatcaccaaGCCAGTGTCTCTGTTGGAGAGGGCCACTCCAGTTTGGGCTCAGGGCATCCTGTCAGCCCACAACATTGCTCAGAGTAACCTCTCTAGGAACCAGgcGGAGGATGAGTTGGAGAGAGCTCAGAAGGTGTTTGAGGAGATTAATGAAGATCTTCAGGAGGAACTGCCCTCACTATGGAACAGtCGTGTTGGCTTCTACGTTAGCACCTTCCAGAGTATGGCTGGCTTCGAGGAGAAGTTCCACAAGGAGATGGGGAAGCTGGACCAGAATCTGTACGATGTTCTTGTCAAACTGGAGAGGCAGGACATGTGTGGtGAGCTCCCCAGAGGAGCAAGTCCAGCCAATCACACTCTGAGTCCAGCCGTACCGCCTCCCATCCCTAAGTCCCCCTCCAAGCTGAGACCAGCGATGCCGCCGCGGCCTGAATCCAGCCCCTGTCGGGACATGAAACCAGAAAACATCATTAACCTGTTTGATGCTGCAGCTGCTCCTAACATCAGTGTTACATCCCCAACACAGGCGATATCGTGGGACACATGGGAGGCTGACACGCCCACAGCAGCTGCTACAGCACCTACTCCTACAGCCACAGCAGTAGAGGAGATTCCTGCTGTCGCAACAGTAGCAACCAATGGGGCTTCAGAGGCGGTAGAGATGCCGCCAGGATTCCTCTTTAAAGTGACCACCATGCATGACTATGCCGCTAATGACTCGGATGAGCTGGAGATGAAGGCTGGAGACATAGTGCTGGTTGTAGCCTTCGACAACCCAGAAGAACAGgatgAGGGCTGGCTGATAGGGATGAAGGAGGGAGACTGGACCCAGAATAAAGAGAGTGCCGTCAAAGGGGTGTTCCCTGAGAACTTTACCTCCAGGCTGTGAGAGAGGAGACACTTCCTCTCCTACTTTGACCACTCTCTCTTCCACAAGATACTctcttctctgacctctctcttcactctctctctctcttccctctttcttccctctctctattccctttctctctattccctctctctctccctctcttccctctcgcttccctctctcttccctctctcttccctctctctcccttccctctctctcttccctctgtctctctgcccgtGCCATCCTCCCTCCTAATTTTCTAACCTCTGGGATTGTAAAGTGTGATACTGTGATACTGTAGTCATTGGCAAGAGAAACAGCACTGCATAATCAACTGTCTGTTCTGTAACCATTTCTAGCATGGATCACACTGTAGGGTCAGATTACATCATCACACTGTAGGGTCAGATTACATCATCACACTGTAGGGTCAGATTACATCATCACACTGTAGGGTCAGAGTACATCACATCACACTGTAGGGTCAGATTACATCATATCACACTGTAGGGTCAGATTACATCATCACACTGTAGGGTCAGAGTACATCACATCACACTGTAGGGTCAGATTACATCATATCACACTGTAGGGTCAGATTACATCATCACACTGTAGGGTCAGAGTACATCACATCACACTGTAGGGTCAGATTACATCATCACACTGTAGGGTCAGATTACATCATATCACACTGTAGGGTCAGATTACATCATCACACTGTAGGGTCAGATTACATCATCACACTGTAGGGTCAGATTACATCATATCACACTGTAGGGTCAGATTACATCATATCACACTGTAGGGTCAGATTCCATCATATCACACTGTAGGGTCAGAGTACATCATATCACACTGTAGGGTCAGATTACATCATATCACACTGTAGGGTCAGATTACATCACATCACACTGTAGGGTCAGATTACATCACATCAAACTGTAGGGTCAGA

Function

symbol description
bin1 Enables several functions, including aspartic-type endopeptidase inhibitor activity; cytoskeletal protein binding activity; and enzyme binding activity. Involved in several processes, including T-tubule organization; negative regulation of amyloid precursor protein catabolic process; and positive regulation of astrocyte differentiation. Located in several cellular components, including axon; cytosol; and nucleus. Part of lipid tube. Colocalizes with cytoskeleton. Implicated in breast carcinoma; centronuclear myopathy 2; and prostate adenocarcinoma.

NR:

description
PREDICTED: myc box-dependent-interacting protein 1 isoform X7

GO: NA

KEGG:

id description
K12562 AMPH; amphiphysin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036975332.1 False 2480 mRNA 0.51 17 81994051 82038179
XM_036975330.1 False 2857 mRNA 0.50 18 81994051 82040699
XM_036975331.1 True 2605 mRNA 0.49 17 81994051 82040699

Neighbor

gene id symbol gene type direction distance location
slc23a3 LOC106586913 coding downstream 14529 81967130 ~ 81979522 (-)
si:dkey-69o16.5 pepe coding downstream 106332 81876621 ~ 81887719 (-)
LOC110520656 LOC106586902 coding downstream 955684 81012098 ~ 81038367 (-)
LOC110520654 LOC106586898 coding downstream 1009668 80979138 ~ 80984383 (-)
LOC110520653 LOC106586906 coding downstream 1085702 80905040 ~ 80908349 (-)
LOC110520662 des coding upstream 65199 82105898 ~ 82143081 (-)
pard3bb LOC106601765 coding upstream 257033 82297732 ~ 82586082 (-)
LOC110505453 LOC106586926 coding upstream 704155 82744854 ~ 82747738 (-)
LOC110504940 LOC106586933 coding upstream 864787 82905486 ~ 83193706 (-)
ttll4 ttll4 coding upstream 1442754 83483453 ~ 83539355 (-)
G303662 NA non-coding downstream 1052 81987106 ~ 81992999 (-)
G303660 NA non-coding downstream 8294 81984177 ~ 81985757 (-)
G303534 NA non-coding downstream 89241 81904536 ~ 81904810 (-)
G303526 NA non-coding downstream 104163 81888759 ~ 81889888 (-)
G303523 NA non-coding downstream 105882 81887934 ~ 81888169 (-)
G303708 NA non-coding upstream 54026 82094725 ~ 82095096 (-)
G303709 NA non-coding upstream 55455 82096154 ~ 82096594 (-)
G303710 NA non-coding upstream 55984 82096683 ~ 82097649 (-)
G303712 NA non-coding upstream 58176 82098875 ~ 82101486 (-)
G303717 NA non-coding upstream 67577 82108276 ~ 82109117 (-)
G302725 NA other downstream 1271428 80721738 ~ 80722623 (-)
G302724 NA other downstream 1272370 80720717 ~ 80721681 (-)
G302660 NA other downstream 1310865 80680986 ~ 80683186 (-)
G302399 LOC106581475 other downstream 1485754 80507935 ~ 80508297 (-)
LOC110520645 LOC106586879 other downstream 1572906 80402867 ~ 80421221 (-)
G304204 LOC107714908 other upstream 790671 82831370 ~ 82851751 (-)
G304264 NA other upstream 909370 82950069 ~ 82951356 (-)
abi2a LOC106574254 other upstream 1915045 83915872 ~ 83986617 (-)

Expression


Co-expression Network