LOC110520662 (des)


Basic Information

Item Value
gene id LOC110520662
gene name des
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 82105898 ~ 82143081 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036975334.1
AAATAGCAGATCTCCTGTCCAACAGCCCCTCATTCAGTTAACAACCTTCAACAGCAGCCCAGTTCCTCCAGCCAGACCCTCGGACAACGTCCACCATGAGCAAGTCCTTCTCCTCCCAGTCCGCCCAGTCAGCCTCTTCCTACCGCCGGACCTTTGGTTCTGGTATTGGATCCACCCCAGGCATGTCCTCCATGTTCTCCCACAGTGGACGCGGCTCCTCCGGCTCCTCCGGCTCGGCCCACATGTCCTCTAGAGTCTACGAGATGACCAAAAGCTCCGCCCGCCCCAGCTACTCCTCCGGTAGCATTCGTTCCTCTTCCGGCGGTGCGATGCGCTCGTACGCCGGGATGGGCGAGAAGCTGGACTTCAGCTTGGCCGACGCCACGAACCGCGACTTCCTGGACACCAGGACCAATGAGAAGGCAGAGCTGCAGCACCTGAACGACCGGTTCGCCAGCTACATCGAGAAGGTCCGTTTCCTGGAGCAGCAGAACGCTACTCTGGTGGTGGAGATCGAGAGGCTGAGGGGTCACGAGCCGACCCGCGTGGCCGAGATGTacgaggaggagatgagagagctgAGGCGTCAGGTGGACGGCATGTCCAATGACAGAGCCCgcatggaggtggagagagacaacCTGGCAGACGACCTGCAGAAACTCAAACTCAGactgCAGGAGGAGATCCACCAGAGGGAAGAGGCAGAGAACAACCTGTCTGCCTTCAGAGCTGACGTGGACTCTGCCACTCTGGCCAGGCTGGACCTGGAGAGACGCATTGAGAGTCTACAGGAGGAGATTGCCTTCCTCAAGAAGATCCACGAGGAGGAGATCCATGAGATGACGAGCCAGATCCAGGAGACCTCGGTGCAGGTCCAGATGGACATGTCCAAACCAGACCTGACCGCTGCCCTCAGGGACATCCGTATGCAGTACGAGGGCATCGCAGCCAAGAACATCTCAGAGGCAGAGGACTGGTACAAGTCAAAGgTGTCAGACCTGAACCAGGCTGTGAACAAGAACAACGATGCTCTGAGACAGTCCAAACAGGAGAGCATGGAGTTCAGGCATCAGATCCAGTCCTACACCTGTGAGATCGACTCTCTCAAGGGAACCaACGAATCTCTGCTGAGGCagatgagggagatggaggatcGTCTGGGAAACGAGGCTGGAGGTTACCAGGACTCCATCACCCGTCTGGAGGCTGAGATCGCTAAGATGAAGGATGAGATGGCTCGTCACCTCagagagtaccaggacctcctcaATGTCAAGATGGCCCTGGATATAGAGATCGCTACCTACAGGAAGCtactggaaggagaggagagccgcaTCACTGTATCTGGCTCCCACTCCGCCTCTCACTCTGCTGCTCACTCTGCTGCTCACTCTGCTGCCTCATCATATTCCACTATTGGATTCAGAGAGACCAGCCCAGACGTAGGGCGTTCATCAGAGGTCCACTCAAAGAAGACTGTTCTGATCAAGACCATCGAAACCCGCGATGGAGAGGTGGTCAGTGAATCTACACAGCACCAGCAGGACAtcatgtaaacaacaacaaacaaacaaacgaaGCAACAAcaagttaaaacattttttttttacataccaaGATACATGGGCTGCTCTAGGTAGCTTTTCTAGGGAAAGCCTCTTTTGAAAGGTTTCTTTTTGAGAGGGAGTGAGTTATTAACACCTTATGAAGAGTTATAACCACATTTACACAGGGTTATACCTGCCTTAGGTATGTTCATAACTCACTAACTCCTAGTAATCAgattttatatgaccaatcaccaaaggagaagaagacagaagaAGACAATATTACCGTAATCAGAAGGCAATGTTACCATAATCAGAAGGCAATGTTACCATAATCAGAATACAATGTTACCGTAATCAGAATACAATGTTACCGTAGTCAGAATACAATGTTACCGTAGTCAGAATACAATGTTACCGTAATCAGAAGGCAATGTTACCGTAATCAGAATACAATGTTACCGTAATCAGAAGGCAATGTTACCATAATCAGAATACAATGTTACCGTAATCAGAATACAATGTTACCGAAATCAGAAGGCAATGTTACCATCATCAGAAAGCAATGTTACCGTGATCAGAAGGAAATGTTACCATAATCAGAATACAATGTTACCGTAATCAGAATACAATGTTACCATAGTCAGAATACAATGTTACCGTAATCAGAAGGCAATGTTACCGTAATCAGAATACAATGTTACCGTAATCAGAAGGCAATGTTACCATAATCAGAATACAATGTTACCGAAATCAGAAGGCAATGTTACCATAATCAGAAAGCAATGTTACCGTAATCAGAAGGAAATGTTACCATAATCAGAATACAATGTTACCGTAATCAGAATACAATGTTACCATAGTCAGAATACAATGTTACCGTAATCAGAAGGCAATGTTACCGTAATCAGAATACAATGTTACCGTAATCAGAAGGCAATGTTACCATAATCAGAATACAATGTTACCGTAATCAGAATACAATGTTACCGTAATCAGAAGGCAATGTTACCATAATCAGAAAGCAATGTTACCGTAATCAGAAGGACATGTTACCGTAATCAGAAGACAATGTTACCGTAATCAGAATACAATGTTACCGTAATCAGAAGACAATGTTACCGTAATCAGAAGGTGGGAACAAGGTGGAATGAAATTCAAGTCAGGCCCAGGCCAGAACAGAACACGCATGGCTAGAGGGGATCTCCAGAATGCCAAGAGATGTATCTCTGTAGTCCacgtttctttgtgtgtgtgtgtcagaaagaGTCTGCTTCACAATGTTTCACAGCCGATGATCTGAAATAAAATACAGTGTATGTTGA
>XM_036975333.1
CTACAAATAGCAGATCTCCTGTCCAACAGCCCCTCATTCAGTTAACAACCTTCAACAGCAGCCCAGTTCCTCCAGCCAGACCCTCGGACAACGTCCACCATGAGCAAGTCCTTCTCCTCCCAGTCCGCCCAGTCAGCCTCTTCCTACCGCCGGACCTTTGGTTCTGGTATTGGATCCACCCCAGGCATGTCCTCCATGTTCTCCCACAGTGGACGCGGCTCCTCCGGCTCCTCCGGCTCGGCCCACATGTCCTCTAGAGTCTACGAGATGACCAAAAGCTCCGCCCGCCCCAGCTACTCCTCCGGTAGCATTCGTTCCTCTTCCGGCGGTGCGATGCGCTCGTACGCCGGGATGGGCGAGAAGCTGGACTTCAGCTTGGCCGACGCCACGAACCGCGACTTCCTGGACACCAGGACCAATGAGAAGGCAGAGCTGCAGCACCTGAACGACCGGTTCGCCAGCTACATCGAGAAGGTCCGTTTCCTGGAGCAGCAGAACGCTACTCTGGTGGTGGAGATCGAGAGGCTGAGGGGTCACGAGCCGACCCGCGTGGCCGAGATGTacgaggaggagatgagagagctgAGGCGTCAGGTGGACGGCATGTCCAATGACAGAGCCCgcatggaggtggagagagacaacCTGGCAGACGACCTGCAGAAACTCAAACTCAGactgCAGGAGGAGATCCACCAGAGGGAAGAGGCAGAGAACAACCTGTCTGCCTTCAGAGCTGACGTGGACTCTGCCACTCTGGCCAGGCTGGACCTGGAGAGACGCATTGAGAGTCTACAGGAGGAGATTGCCTTCCTCAAGAAGATCCACGAGGAGGAGATCCATGAGATGACGAGCCAGATCCAGGAGACCTCGGTGCAGGTCCAGATGGACATGTCCAAACCAGACCTGACCGCTGCCCTCAGGGACATCCGTATGCAGTACGAGGGCATCGCAGCCAAGAACATCTCAGAGGCAGAGGACTGGTACAAGTCAAAGgTGTCAGACCTGAACCAGGCTGTGAACAAGAACAACGATGCTCTGAGACAGTCCAAACAGGAGAGCATGGAGTTCAGGCATCAGATCCAGTCCTACACCTGTGAGATCGACTCTCTCAAGGGAACCaACGAATCTCTGCTGAGGCagatgagggagatggaggatcGTCTGGGAAACGAGGCTGGAGGTTACCAGGACTCCATCACCCGTCTGGAGGCTGAGATCGCTAAGATGAAGGATGAGATGGCTCGTCACCTCagagagtaccaggacctcctcaATGTCAAGATGGCCCTGGATATAGAGATCGCTACCTACAGGAAGCtactggaaggagaggagagccgcaTCACTGTATCTGGCTCCCACTCCGCCTCTCACTCTGCTGCTCACTCTGCTGCTCACTCTGCTGCCTCATCATATTCCACTATTGGATTCAGAGAGACCAGCCCAGACGTAGGGCGTTCATCAGAGGTCCACTCAAAGAAGACTGTTCTGATCAAGACCATCGAAACCCGCGATGGAGAGGAAAGTCCCTTTGAGACCATGTCTCTTTTGGAAGAGAGCCCtgtctcacaaaaaaaaaaaaagagcagcAGAAAAAACAAGGTGGTCAGTGAATCTACACAGCACCAGCAGGACAtcatgtaaacaacaacaaacaaacaaacgaaGCAACAAcaagttaaaacattttttttttacataccaaGATACATGGGCTGCTCTAGGTAGCTTTTCTAGGGAAAGCCTCTTTTGAAAGGTTTCTTTTTGAGAGGGAGTGAGTTATTAACACCTTATGAAGAGTTATAACCACATTTACACAGGGTTATACCTGCCTTAGGTATGTTCATAACTCACTAACTCCTAGTAATCAgattttatatgaccaatcaccaaaggagaagaagacagaagaAGACAATATTACCGTAATCAGAAGGCAATGTTACCATAATCAGAAGGCAATGTTACCATAATCAGAATACAATGTTACCGTAATCAGAATACAATGTTACCGTAGTCAGAATACAATGTTACCGTAGTCAGAATACAATGTTACCGTAATCAGAAGGCAATGTTACCGTAATCAGAATACAATGTTACCGTAATCAGAAGGCAATGTTACCATAATCAGAATACAATGTTACCGTAATCAGAATACAATGTTACCGAAATCAGAAGGCAATGTTACCATCATCAGAAAGCAATGTTACCGTGATCAGAAGGAAATGTTACCATAATCAGAATACAATGTTACCGTAATCAGAATACAATGTTACCATAGTCAGAATACAATGTTACCGTAATCAGAAGGCAATGTTACCGTAATCAGAATACAATGTTACCGTAATCAGAAGGCAATGTTACCATAATCAGAATACAATGTTACCGAAATCAGAAGGCAATGTTACCATAATCAGAAAGCAATGTTACCGTAATCAGAAGGAAATGTTACCATAATCAGAATACAATGTTACCGTAATCAGAATACAATGTTACCATAGTCAGAATACAATGTTACCGTAATCAGAAGGCAATGTTACCGTAATCAGAATACAATGTTACCGTAATCAGAAGGCAATGTTACCATAATCAGAATACAATGTTACCGTAATCAGAATACAATGTTACCGTAATCAGAAGGCAATGTTACCATAATCAGAAAGCAATGTTACCGTAATCAGAAGGACATGTTACCGTAATCAGAAGACAATGTTACCGTAATCAGAATACAATGTTACCGTAATCAGAAGACAATGTTACCGTAATCAGAAGGTGGGAACAAGGTGGAATGAAATTCAAGTCAGGCCCAGGCCAGAACAGAACACGCATGGCTAGAGGGGATCTCCAGAATGCCAAGAGATGTATCTCTGTAGTCCacgtttctttgtgtgtgtgtgtcagaaagaGTCTGCTTCACAATGTTTCACAGCCGATGATCTGAAATAAAATACAGTGTATGTTGA

Function

symbol description
des Enables cytoskeletal protein binding activity and identical protein binding activity. Involved in intermediate filament organization. Located in several cellular components, including intercalated disc; myofibril; and sarcolemma. Implicated in intrinsic cardiomyopathy (multiple) and myopathy (multiple). Biomarker of dilated cardiomyopathy; mitral valve prolapse; and myofibrillar myopathy 1.

NR:

description
desmin-like

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036975334.1 False 2881 mRNA 0.47 9 82105898 82143077
XM_036975333.1 True 2966 mRNA 0.47 10 82105898 82143081

Neighbor

gene id symbol gene type direction distance location
LOC110510426 bin1 coding downstream 65199 81994051 ~ 82040699 (-)
LOC118964333 NA coding downstream 82175 82023279 ~ 82023723 (-)
LOC118964332 NA coding downstream 82718 82022835 ~ 82023180 (-)
slc23a3 LOC106586913 coding downstream 126376 81967130 ~ 81979522 (-)
si:dkey-69o16.5 pepe coding downstream 218179 81876621 ~ 81887719 (-)
pard3bb LOC106601765 coding upstream 154651 82297732 ~ 82586082 (-)
LOC110505453 LOC106586926 coding upstream 601773 82744854 ~ 82747738 (-)
LOC110504940 LOC106586933 coding upstream 762405 82905486 ~ 83193706 (-)
ttll4 ttll4 coding upstream 1340372 83483453 ~ 83539355 (-)
abcb6b LOC106586936 coding upstream 1403841 83546922 ~ 83612879 (-)
G303712 NA non-coding downstream 4412 82098875 ~ 82101486 (-)
G303710 NA non-coding downstream 8249 82096683 ~ 82097649 (-)
G303709 NA non-coding downstream 9304 82096154 ~ 82096594 (-)
G303708 NA non-coding downstream 10802 82094725 ~ 82095096 (-)
G303678 NA non-coding downstream 76353 82028401 ~ 82029545 (-)
G303727 NA non-coding upstream 1902 82144983 ~ 82185878 (-)
G303745 NA non-coding upstream 34093 82177174 ~ 82179149 (-)
G303758 NA non-coding upstream 70203 82213284 ~ 82213516 (-)
G303761 NA non-coding upstream 107248 82250329 ~ 82250588 (-)
G303762 NA non-coding upstream 108290 82251371 ~ 82251586 (-)
G303665 NA other downstream 82447 82022829 ~ 82023451 (-)
G303663 NA other downstream 83633 82021388 ~ 82022265 (-)
G302725 NA other downstream 1383275 80721738 ~ 80722623 (-)
G302724 NA other downstream 1384217 80720717 ~ 80721681 (-)
G302660 NA other downstream 1422712 80680986 ~ 80683186 (-)
G304204 LOC107714908 other upstream 688289 82831370 ~ 82851751 (-)
G304264 NA other upstream 806988 82950069 ~ 82951356 (-)
abi2a LOC106574254 other upstream 1812663 83915872 ~ 83986617 (-)

Expression


Co-expression Network