LOC110505453 (LOC106586926)


Basic Information

Item Value
gene id LOC110505453
gene name LOC106586926
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 82744854 ~ 82747738 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021584685.2
TTTCAGGTGGGGACGAATCGCAAAGGAAGCAGAGGAGCGACTGGCACCGCACGGCACGGACGGACAAATTAGAACAAAAGAGGGGAAAAGTATATTGTCAAGAAAGTGATAACGTAacgttttattattatttatttagaaAAACTGAAACATTAGACAAACAGTAGTGTTTTAAAACTATCTCGGTGAGATGCTGTTTCGTTTCGCCTAAAACAACTCTAATCCAGCAATCATAACCCAAAAGAATAATTTGAGTTGGTGTAAAGTCTCAGGAAAAGTACACAATGGCGAAATCTAAGCATTTTGGAATCGACGCGCTGTTGGCGCACCGGGTGGACCGagacagctccccgggactgtgTTCTGAGGACAACCCATTCTCGTGCCGCCGGTCGGAGACCCAATCCCAGCGGAGGACCACCAGCGGTATCCACATTCAGACCGGGATTATCCCCAAACAGGGTCTATTGAATTTCTCTCACCAGGGACTGACCCAGCTGTCTCAGGGGGCCATCCCTGGAATGTATCCCACCCACATGTACCCCGTCGCGGCTCTGAGTGGCCAGCACACAGCCTTCGCCTATCCCAGTTTCGCCCAGCCGTACCCGGAGCACCTAAGGGCAGCAGTTATGGCTGGGTTTCCGCTAGAACACTGGATTAGAGCTGGAATGATGATGCCAAGACTCGGAGACTATGGTGCCTCTTCTCAGGCCAGTCTGATGGGGAAGTGTCGTAGGCCCAGAACAGCCTTCACCagtcaacaactactacagctggAGAACCAGTTCAAACTCAACAAATACCTGTCCAGACCTAAACGCTTTGAGGTGGCCACCTCTCTCATGCTCACAGAGACACAGGTGAAGATCTGGTTCCAGAACAGGCGTATGAAGTGGAAGCGGAGCCGCAAGGCCAAGGAGCAGGCAATCAAGGGCCAAGGTGACTCCGACTGTCCTCACGGGGGGAAGCAGGGCAGCAACACCGGGTCTGGAGACACCCGTAACTCTGGTACCCTGGACGATGAAGATGAGGAGGATCTGGAAGCAGGGGAAGAAGATGATGCGTTAAGTGCTGATACCGTAGGAGCTGGAGTGGGTTTACTGTCTCGCCCTACACATTTCCTGAGGCACACTGCGACAGAGCTCAGCTATAGTTCTCATGGTTCCTACTCAGACAATGAACTAGAGGACAGTGGGCCTGGACTGGAGAGAAGGGTTGGGGTGGGGTTATGAGGACAGTAGGCCTGGACTGGAGAGAAGGGTTGGGGTGGGGTTATGAGGACAGTAGACCTGGACTGGAGAGAAGGGTTGGGGTGGGGTTATGAGGAGAGTGGGCCTGGACTGGAGAGAAGGGTTGAGGTGGGGTTATGAGGACAGTAGGCCTGGACTGGAGAGAAGGGTTGAGGTGGGGTTATGAGGACAGTAGGCCTGGACTGGAGAGAAGGGTTGGGGTGGGGTTATGAGGACAGTAGACCTGGACTGGAGAGAAGGGTTGGGGTGGAGTTATGAGGACAGTAGGCCTGGACTGGAGAGAAGGGTTGGGGTGGGGTTATGAGGACAGTGGGCCTGGACTGGAGAGAAGGGTTGGGGTGGGGTTATGAGGAGAGTGGGCC
>TU345254
CCAGTTTCAGGTGGGGACGAATCGCAAAGGAAGCAGAGGAGCGACTGGCACCGCACGGCACGGACGGACAAATTAGAACAAAAGAGGGGAAAAGTATATTGTCAAGAAAGTGATAACGTAacgttttattattatttatttagaaAAACTGAAACATTAGACAAACAGTAGTGTTTTAAAACTATCTCGGTGAGATGCTGTTTCGTTTCGCCTAAAACAACTCTAATCCAGCAATCATAACCCAAAAGAATAATTTGAGTTGGTGTAAAGTCTCAGGAAAAGTACACAATGGCGAAATCTAAGCATTTTGGAATCGACGCGCTGTTGGCGCACCGGGTGGACCGagacagctccccgggactgtgTTCTGAGGACAACCCATTCTCGTGCCGCCGGTCGGAGACCCAATCCCAGCGGAGGACCACCAGCGGTATCCACATTCAGACCGGGATTATCCCCAAACAGGGTCTATTGAATTTCTCTCACCAGGGACTGACCCAGCTGTCTCAGGGGGCCATCCCTGGAATGTATCCCACCCACATGTACCCCGTCGCGGCTCTGAGTGGCCAGCACACAGCCTTCGCCTATCCCAGTTTCGCCCAGCCGTACCCGGAGCACCTAAGGGCAGCAGTTATGGCTGGGTTTCCGCTAGAACACTGGATTAGAGCTGGAATGATGATGCCAAGACTCGGAGACTATGGTGCCTCTTCTCAGGCCAGTCTGATGGGGAAGTGTCGTAGGCCCAGAACAGCCTTCACCagtcaacaactactacagctggAGAACCAGTTCAAACTCAACAAATACCTGTCCAGACCTAAACGCTTTGAGGTGGCCACCTCTCTCATGCTCACAGAGACACAGGTGAAGATCTGGTTCCAGAACAGGCGTATGAAGTGGAAGCGGAGCCGCAAGGCCAAGGAGCAGGCAATCAAGGGCCAAGGTGACTCCGACTGTCCTCACGGGGGGAAGCAGGGCAGCAACACCGGGTCTGGAGACACCCGTAACTCTGGTACCCTGGACGATGAAGATGAGGAGGATCTGGAAGCAGGGGAAGAAGATGATGCGTTAAGTGCTGATACCGTAGGAGCTGGAGTGGGTTTACTGTCTCGCCCTACACATTTCCTGAGGCACACTGCGACAGAGCTCAGCTATAGTTCTCATGGTTCCTACTCAGACAATGAACTAGAGGACAGTGGGCCTGGACTGGAGAGAAGGGTTGGGGT

Function

NR:

description
motor neuron and pancreas homeobox protein 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021584685.2 False 1612 mRNA 0.53 3 82744854 82747734
TU345254 True 1226 TUCP 0.52 3 82745244 82747738

Neighbor

gene id symbol gene type direction distance location
pard3bb LOC106601765 coding downstream 158772 82297732 ~ 82586082 (-)
LOC110520662 des coding downstream 601773 82105898 ~ 82143081 (-)
LOC110510426 bin1 coding downstream 704155 81994051 ~ 82040699 (-)
LOC118964333 NA coding downstream 721131 82023279 ~ 82023723 (-)
LOC118964332 NA coding downstream 721674 82022835 ~ 82023180 (-)
LOC110504940 LOC106586933 coding upstream 157752 82905486 ~ 83193706 (-)
ttll4 ttll4 coding upstream 735719 83483453 ~ 83539355 (-)
abcb6b LOC106586936 coding upstream 799188 83546922 ~ 83612879 (-)
LOC110520669 LOC106586940 coding upstream 878835 83626569 ~ 83629281 (-)
LOC110505466 LOC106586938 coding upstream 891356 83639090 ~ 83643367 (-)
G304075 NA non-coding downstream 63645 82680989 ~ 82681209 (-)
G304072 NA non-coding downstream 69477 82675049 ~ 82675377 (-)
G304068 NA non-coding downstream 73111 82671495 ~ 82671743 (-)
G304044 NA non-coding downstream 117205 82622978 ~ 82627649 (-)
G304038 NA non-coding downstream 149147 82594612 ~ 82595707 (-)
G304133 NA non-coding upstream 11522 82759256 ~ 82759546 (-)
G304137 NA non-coding upstream 13185 82760919 ~ 82761408 (-)
G304217 NA non-coding upstream 28879 82776613 ~ 82776903 (-)
G304218 NA non-coding upstream 54950 82802684 ~ 82803096 (-)
G304219 NA non-coding upstream 55402 82803136 ~ 82805098 (-)
G303665 NA other downstream 721403 82022829 ~ 82023451 (-)
G303663 NA other downstream 722589 82021388 ~ 82022265 (-)
G302725 NA other downstream 2022231 80721738 ~ 80722623 (-)
G302724 NA other downstream 2023173 80720717 ~ 80721681 (-)
G304204 LOC107714908 other upstream 83636 82831370 ~ 82851751 (-)
G304264 NA other upstream 202335 82950069 ~ 82951356 (-)
abi2a LOC106574254 other upstream 1208010 83915872 ~ 83986617 (-)
LOC110504983 LOC106586944 other upstream 1332287 84072966 ~ 84220262 (-)
G305189 NA other upstream 1433317 84181051 ~ 84182035 (-)

Expression


Co-expression Network