LOC110504940 (LOC106586933)



Basic Information


Item Value
gene id LOC110504940
gene name LOC106586933
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 82905486 ~ 83193706 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_036965260.1
TGTGTCCTCTGTCCTGAAGGCAGCAAATCGTGTGGCGGACAAGTAGACGCCAGTGGCGCCGGGTACATCACCACCCCAGGGTACCCTCTGGAGTACCCCCCACACCAGAACTGTCGTTGGGTCGTCACCGCCCCAGAACCCTCCCAACGTGTCGTCCTCAACTTCAACCCCCACTTCGAACTGGAGAAGCTGGACTGCAgATATGACTACGTAGAGATCCGCGATGGGAACAGCGAGAAGGCAGACCTGTTGGGTAAACACTGCAGTAACATCGCCCCTCCAGCCATCATATCCTCAGGCCCTGTCCTCCTCATCAGGTTCGTCTCTGACTACGCTCACCAGGGGGCTGGCTTCTCACTGCGGTATGAGATCTTCAAGACTGGTTCAGACTGCTCCCGTAACTTCACCAGTCAGAACGGGATCATTGAGTCTCCGGGGTTCCCTGATAAATACCCTCATAACCTGGAGTGTTCCTTCATTATCATCGTGCCCCCGGCCATGGACTTGACCCTGACCTTCCTGACCTTTGACCTGGAGAATGACCCCCTGCCCGGGGGAGAAGGAGACTGCAAGTACGACTGGCTGGAGGTCTGGGACGGTCTGCCACAAGTGGGTCCTCTGATAGGACGTTACTGTGGAACTAAGATCCCTCCTGAGATGACGTCGTCTACAGGtatcctgtctctgtccttccacACGGACATGGCCGTGGCCAAAGATGGCTTCTCTGCTCGCTACAACATGACACACAAAGAGGTCAGCGACAcTTTCCATTGCAGTAACGCGTTAGGTCTGGAGTCAGGGAAGATCTCTGACGACCAGATCACTGCCTCCTCATCCTTTTACGACAACACCTGGTTGCCACGGCAAGCCCGTCTTAACAACAATAACAACGCGTGGACCCCAAACGAGGACAGCAGCAAAGAGTTCATCCAGGTGGATCTCCATGTCCTGAAGGTGTTGACGGGTATCGCTACCCAGGGAGCGGTGTCCAAGGAGACCCAGAAGTCCTACTACGTCATCACCTTTAAGTTGGAGGTCAGCACCAACGGAGAGGACTGGATGGTCTACCGATACGGCAAGAACCACAAGGTGTTCCATGCCAACACAGACTCGACCGAGGTGGTTCTAAACCGGATCCCCCTGCCTGTTCTGGCCCGCTTCGTACGCGTCAGACCCCAGACCTGGAAGACAGGCATCGCCCTGCGCTTGGAGCTCTACGGGTGTCAGATCACCGACGCTCCATGTTCTGAGATGCAGGGGATGCTGTCCGGCCTGCTGCCCGACTCCCAGATCACAGCGTCATCCATGAGGGATGTCCACGGCTCCATGGGGACGGCCAGGCTGGTAGCCAGCAGGTCAGGATGGTTCCCTAGCCCAACACAGCCTCTGGCCGGGGAGGAGTGGCTCCAGGTGGACTTGGGGGTCCCCAAGACCGTACGAGGCGTCATCACCCAGGGAGTCAGGACAGTGGAGGGGAGTACCTCGGCTGAGAACAGGGCCTTCGTCAGGAAGTACCGCGTGTCTTACAGCCTGACGGGCAAGGACTGGACTTTTATACTGGACAGAAAGACCAGCCATCCTAAGATTTTTGAGGGAAACACACACTACGACACTCCAGAGATCCGTCGGTTTGAGGAGATAACGGCTCAGTTCATCAGGATCTACCCAGAGAGGTGGTCTCCTGCTGGGATAGGGATGAGGCTGGAGGTCCTGGGATGTGAACTGCCAGAGACCACCACTCTACCTGACACTGCCACACcgaccctgccacgtttagaggataccaccgctgcccaaagaggagaggGCACTACTCCTTGGTCTCTGTGTGACTTTGAGTCCAGTCTGTGTGGCTGGATCCCAGACAGCGTGTCAGAGCTGAGCTGGTCTCTCCACAGTGGCAGCCTCTCGTCTGGTCTCACACCTAGTCTggatctacctctctctctgcccaaagACGACGTGGGTAACTTCCTCCACATCGAGGCCAGCCCCAGGACAGAGAGGCAGCGAGCCCGTCTGGTGAGCCCCGCTGTGGGGCCTGAGAGGGGGCCGCTGTGCCTGCTCTTCAACTACCAGCTCCAGGGGCCCGAGAACCAGGGGCTGGGGTCCCTCAGGATCCTCCTCAGAGACAACGACCGGGAGGAGACTCTTCTCTGGGCACTCGGAGGAGACCAGGGGCCCGTGTGGAAGGAGGGACGCACCATTCTGCCCCAGTCACCCAAAGAGTACCAGGTGGTGATTGAGGGGTACTTTGAGCACGGAAACAGAGGACACATCTGGATAGACAACATTCACATGAGCTCTAGTACAGAGCTGGAACAGTGCACACGTAAGTCCTCCACACCTAATCCTAAACctcactgctctgtctgtctgggaggggCAGGCTGGCTGAAGTACAGCAAAGCACAGTCagagaaccagacagttagaGAACCAGACAGTCAGAGAACCAGacagacccatgccaaatctccccctctcctgagggggactaggttttgtcgtgccctcttcaAGTCTATCCTACAGCGTATGGTGGAGACCCTGGACAGGTATGGTATTGACCCTAGAGAGCTGACCCCCCAGCAGCTCTACAGACTGGCTGTGGTGCTGCAGCTGATGCAGGCTGAGGACAAGGACAACATAGAGCCACTTACCAATGATCCAAAGAAGACTCAGCAGGTTCTTAAAAGCAGTGACACAGTGCCCGAAAAGGTAGAGAAAGCTCCCGTCCTTGTCCGTGGGCCCAAAGTGGTCCCTACCCTGGCCTCAGCTGCCACTAGTCCCCCCATCACGGCACCTCTAGAGGGCAGCGTGACGGCCAAGGACTCCTCCGTCTCTGTGGAGGATGTGaaagagaaggtgaaaagctCCAATATCCCAGCTGCTGAGAGGGGAACAGCAGACAGGGAGAAGTATGGATACATCGTCACCAACCAGAGTCCTCTCAGTCTGTATAATGGGGTGAAACTACTGGGCGTACTTGCAGAGAGGATCCACCTGACTACCAGCAGCTTCATCAACATCAGTGTGGTGGGCCCTGCCCTGACGTTCAGGATCAGGCAGAACCCTCAGAACATGAGTGCAGAGGATATGGCTGAGAAGGCTGCATCTCAGAAGTCCTTTCTGGAGTCTGAGACAGGGTTGAAGATACTGCAGACTGGTGTGGGAGAGAGGAGCGAGGGTCATGGGCTGCCCCATGCCACGCGGGTGAGGGAGGGCTCCAGTGGGCTGGTACTGACGCTGGTGTCCATGGCGTGTGTGGgcggggtggtggtggtagcattGACCATCGCCTGTCTCCGACACCATGCCAAGCAGCTGGCCTCAGGGAAACTGGGCCTCGGACCCGAGGGAGGACCGGAGACACACGTTGACTACCAGGAGCTCTGCAGGCAGCACATGGCAGCCAAGCCGTCGTTCAGTCGTCAGGAGGCGGTGGGCGGGGGAGCGGGGGGTCGGAGGGGGACAGACACCTCCAGGGTGAGCAGTGTGTCGTCCCAGTTCAGTGACGGCCCACAACACAGCCCCTCCTCACACAGCAGTACGCCCTCCTGGAGCGAGGAGCCCGCCCAGTCCAACATGGACATCTCTACTGGTCACATGATACTGGCCTATATGGAGGATCATCTGGAGAATAAGGACCGTCTGCTGAAGGAGTGGGAGGATCTTTGTTCCTACCAGGCTGAACCCAGTGCTGTCACTGTAGCACAGAGTGAAGCCCACCTGGAGAAGAACCGCTGTTCGGACTCTCTTCCCTATGATCATTCCCGTGTGAAATTGAAGGCAGAGAGCAACTCCACGAAGGAAGACTACATTAACGCCAGCACCATAATTGACCATGACCCTCGACTGCCTGCTTACATCGCCACCCAGGGACCACTGGCACACACAATCGCTGACTTCTGGCAGACAGTCTGGGAGAATGGCTGTACAGTGATAGTGATGACGACAGCCCTGGTTGAGGATGGAGAGATTCAGTGTGTTCGCTACTGGCCTGACGAGGGATCCTCCCTCTACCACATCTACGAGGTGAATTTGGTCTCTGAACACATCTGGTGTAAAGACTTCCTGGTTCGTAGTTTCTACCTGAAGAACGTTCAGACCCAGGAGACTCGTACCTTGACACAGTTCCACCTGCTCAGCTGGCCCTCCAACGGAATCCCTACCTCCACACGCCCTCTGCTGGACTTCCGCAGGAAGGTGAATAGGTGCTACAGAGCTCGATCCTGCCCCATCATCGTCCACTGCAGTGACGGCACTGGCAGAACGGGAACCTACATCCTTATTGACATGGTCCTCAATCGCATGGCTAAGGGCGTGAAGGAGATTGATATTGCTGCGACATTGGAACACATTCGGGATCAGAGACCGAACTTAGTCCGCACCAAGGATCAGTTTGAGTTTGCACTGACTGCCGTGGCAGAAGAGGTCAATGCCATCCTGAAGGCTCTGCCACAGTGAACCATGtgtctaccacctctaccacctcgtGTGCCAGAACCTTACAACTAGAATTACCATGAAAGTTATGCATCATAATACCAATGACGGCCATATTGAGTGTCCCCCATGATTGTACCATTCCCACTGCTGTGGTCTGACGGGTTGTTGACGAtctagtaattctatttctatggccatTATTAACCCTTCCTCTACATCCAGATACACAACCAGGGAGGAACTACATTTCCCAGAGTCCATTACTATTACACCAATGACCATAGGAGTCAGCAAGACCGTACAAACAGATCTGAGGCCAGGCTGCTATCATAATGAAATTAAATGAGGTTTTAAAAAATCCTGTAGATTATTCCGTTCAGGCAAAAACACTTTAAATGTACAGTAGGACCCCTTTACAGTGTCTTGTTATTCAATTTTAGATTGAGATTTGGTCTTAAAATACTGTGACTTGATTCTGTAACATTTCTCCTTTCTCTGATTCTCAGTCTCAGACATGTCTCACTAGAGATATTACAATTACCATGATCCCTCCTGttctgttgtcatggagatgtTGTATTACCATGATCCCTCCTGttctgttgtcatggagatgtTATATTACCATGATCCCTCCTGttctgttgtcatggtgatgttgtCATGGAGATGTTGTATTACCATGATCCCTCCTGTTCTGGTGTCATGGAGATGTTGTATTACCATGATCCCTCCTGTTCTGTTGTTATGGAGATGTTATATTACCATGATCCCTCCTGttctgttgtcatggtgatgttgtCATGGAGATGTTATATTACCATGATCCCTCCTGTTCTGGTGTCATGGAGATGTTGTATTACCATGATCCCTCCTGttctgttgtcatggagatgtTATATTACCATGATCCCTCCTGttctgttgtcatggtgatgttgtCATGGAGATGTTATATTACCATGATCCCTCCTGTTCTGGTGTCATGGAGATGTTGTATTACCATGATCCCTCATGttctgttgtcatggagatgtTGTTTAAAACCACATTGTACTCTAGAAGGTATACATCCATATAACATAACAGCATGAGGCCCGTGGCTTGtttatgcaggaagacagagaccCTCACTATGGTAAGGATGAAGTGAGTGACATACTAGTGTACGATACGCTACACCAGTTTCTCTAAGGGGCTGGCGTTTACCTCTAACATGATTGTCTGTTATTAAACTGTAACTAAACCCTAGTGTACAATACGTTACACCAGTTTCTCTAAGGGGCTGGCGTTTACCTCTAACATGATTGTCTGTTATTAAACTGTAACTAAACCCTAGTGTACAATACGTTACACCAGTTTCTCTAAGGGGCTGGCGTTTACCTCTAACATGATTGTCTGTTATTAAACTGTAACTAAACCCTAGTGTACAATACGTTACACCAGTTTCTCTAAGGGGCTGGCGTTTACCTCTAACATGATTGTCTGTTATTAAACTGTAACTAAACCCTAGTGTACAATACGTTACACCAGTTTCTCTAAGGGGCTGGCGTTTACCTCTAAGTTTAACTCTAAGCCCAATGATTTATTTATATCCATTTTGTAATTGAACTATTACTGTACACTGACTACCTAATCACTCACATCTGAATCATATCAATTAGTGTCTTTAATAATGTTACTGTAAAACCTCTGTGTTTATTGTAAATAATTCACCTGATTATTTATTATATGTTTATTAATGTAGCAAACACATAGAAAACAACTATAAAAATATTTTTCACTCATCGTATGTAATTAAATCTCTATCGTGATGTGGTGCAACAGCATAAAGGGGTCTGACTGTGTTCTTTTCCATTCACATCCCATAATACTGAC
>TU345422
TACAattagattacattttttttttaattaaaaaacgtttttaaaagggtcttggaacctctaaccctgacaaTTTGACTGGAAAACTCATGGGTACACACGCAATGTCTGCCTGTCCACCCATTATGACATCATTGAATAGGGACACCCGTTCTATAGATCCCATTTCTGCGGTCTTTATGACGTGCCGTGTGATCTGACGAGGTATTCCCTGTCTCGTACAGTGACGGCACTGGCAGAACGGGAACCTACATCCTTATTGACATGGTCCTCAATCGCATGGCTAAGGGCGTGAAGGAGATTGATATTGCTGCGACATTGGAACACATTCGGGATCAGAGACCGAACTTAGTCCGCACCAAGGATCAGTTTGAGTTTGCACTGACTGCCGTGGCAGAAGAGGTCAATGCCATCCTGAAGGCTCTGCCACAGTGAACCATGtgtctaccacctctaccacctcgtGTGCCAGAACCTTACAACTAGAATTACCATGAAAGTTATGCATCATAATACCAATGACGGCCATATTGAGTGTCCCCCATGATTGTACCATTCCCACTGCTGTGGTCTGACGGGTTGTTGACGAtctagtaattctatttctatggccatTATTAACCCTTCCTCTACATCCAGATACACAACCAGGGAGGAACTACATTTCCCAGAGTCCATTACTATTACACCAATGACCATAGGAGTCAGCAAGACCGTACAAACAGATCTGAGGCCAGGCTGCTATCATAATGAAATTAAATGAGGTTTTAAAAAATCCTGTAGATTATTCCGTTCAGGCAAAAACACTTTAAATGTACAGTAGGACCCCTTTACAGTGTCTTGTTATTCAATTTTAGATTGAGATTTGGTCTTAAAATACTGTGACTTGATTCTGTAACATTTCTCCTTTCTCTGATTCTCAGTCTCAGACATGTCTCACTAGAGATATTACAATTACCATGATCCCTCCTGttctgttgtcatggagatgtTGTATTACCATGATCCCTCCTGttctgttgtcatggagatgtTATATTACCATGATCCCTCCTGttctgttgtcatggtgatgttgtCATGGAGATGTTGTATTACCATGATCCCTCCTGTTCTGGTGTCATGGAGATGTTGTATTACCATGATCCCTCCTGTTCTGTTGTTATGGAGATGTTATATTACCATGATCCCTCCTGttctgttgtcatggtgatgttgtCATGGAGATGTTATATTACCATGATCCCTCCTGTTCTGGTGTCATGGAGATGTTGTATTACCATGATCCCTCCTGttctgttgtcatggagatgtTATATTACCATGATCCCTCCTGttctgttgtcATGGAGATGTTGTATTACCATGATCCCTCATGttctgttgtcatggagatgtTGTTTAAAACCACATTGTACTCTAGAAGGTATACATCCATATAACATAACAGCATGAGGCCCGTGGCTTGtttatgcaggaagacagagaccCTCACTATGGTAAGGATGAAGTGAGTGACATACTAGTGTACGATACGCTACACCAGTTTCTCTAAGGGGCTGGCGTTTACCTCTAAGTTTAACTCTAAGCCCAATGATTTATTTATATCCATTTTGTAATTGAACTATTACTGTACACTGACTACCTAATCACTCACATCTGAATCATATCAATTAGTGTCTTTAATAATGTTACTGTAAAACC
>TU345548
GGCACTACTCCTTGGTCTCTGTGTGACTTTGAGTCCAGTCTGTGTGGCTGGATCCCAGACAGCGTGTCAGAGCTGAGCTGGTCTCTCCACAGTGGCAGCCTCTCGTCTGGTCTCACACCTAGTCTggatctacctctctctctgcccaaagACGACGTGGGTAACTTCCTCCACATCGAGGCCAGCCCCAGGACAGAGAGGCAGCGAGCCCGTCTGGTGAGCCCCGCTGTGGGGCCTGAGAGGGGGCCGCTGTGCCTGCTCTTCAACTACCAGCTCCAGGGGCCCGAGAACCAGGGGCTGGGGTCCCTCAGGATCCTCCTCAGAGACAACGACCGGGAGGAGACTCTTCTCTGGGCACTCGGAGGAGACCAGGGGCCCGTGTGGAAGGAGGGACGCACCATTCTGCCCCAGTCACCCAAAGAGTACCAGGTGGTGATTGAGGGGTACTTTGAGCACGGAAACAGAGGACACATCTGGATAGACAACATTCACATGAGCTCTAGTACAGAGCTGGAACAGTGCACA

Function


NR:

description
PREDICTED: neuropilin-2-like, partial

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_036965260.1 False 6333 mRNA 0.51 31 82905486 83193706
TU345422 False 1704 lncRNA 0.41 5 82905673 82908040
TU345548 True 525 lncRNA 0.60 3 82982413 82998287

Neighbor


gene id symbol gene type direction distance location
LOC110505453 LOC106586926 coding downstream 157752 82744854 ~ 82747738 (-)
pard3bb LOC106601765 coding downstream 319404 82297732 ~ 82586082 (-)
LOC110520662 des coding downstream 762405 82105898 ~ 82143081 (-)
LOC110510426 bin1 coding downstream 864787 81994051 ~ 82040699 (-)
ttll4 ttll4 coding upstream 289747 83483453 ~ 83539355 (-)
abcb6b LOC106586936 coding upstream 353216 83546922 ~ 83612879 (-)
LOC110520669 LOC106586940 coding upstream 432863 83626569 ~ 83629281 (-)
LOC110505466 LOC106586938 coding upstream 445384 83639090 ~ 83643367 (-)
LOC118964336 NA coding upstream 453625 83646979 ~ 83770550 (-)
G304250 NA non-coding downstream 444 82903820 ~ 82905042 (-)
G304243 NA non-coding downstream 5053 82900219 ~ 82900433 (-)
G304204 LOC107714908 non-coding downstream 53735 82831370 ~ 82851751 (-)
G304237 NA non-coding downstream 65666 82839051 ~ 82839820 (-)
G304228 NA non-coding downstream 85056 82820149 ~ 82820430 (-)
G304426 NA non-coding upstream 2003 83195709 ~ 83196015 (-)
G304429 NA non-coding upstream 6394 83200100 ~ 83220989 (-)
G304465 NA non-coding upstream 89161 83282867 ~ 83283273 (-)
G304467 NA non-coding upstream 90015 83283721 ~ 83283938 (-)
G304468 NA non-coding upstream 90418 83284124 ~ 83284577 (-)
G303665 NA other downstream 882035 82022829 ~ 82023451 (-)
G303663 NA other downstream 883221 82021388 ~ 82022265 (-)
abi2a LOC106574254 other upstream 762038 83915872 ~ 83986617 (-)
LOC110504983 LOC106586944 other upstream 886315 84072966 ~ 84220262 (-)
G305189 NA other upstream 987345 84181051 ~ 84182035 (-)
si:dkey-230p4.1 LOC106591428 other upstream 1087777 84232727 ~ 84301357 (-)
LOC110520676 LOC106562996 other upstream 1111598 84305303 ~ 84308440 (-)
LOC118964333 NA coding downstream 881950 82023279 ~ 82023723 (-)
LOC118964332 NA coding downstream 882493 82022835 ~ 82023180 (-)
G304356 NA non-coding upstream 25990 83024277 ~ 83042117 (-)
G304366 NA non-coding upstream 54427 83052714 ~ 83053592 (-)
G304368 NA non-coding upstream 60260 83058547 ~ 83061785 (-)
G304412 NA non-coding upstream 169258 83167545 ~ 83171995 (-)

Expression



Co-expression Network