LOC118964336


Basic Information

Item Value
gene id LOC118964336
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 83646979 ~ 83770550 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036975350.1
ACAGTCaagtgtgtgggtgtggtgttTTCACCCCTCTGCTCGGGGTGAAAACTGTATCCTCCTAGCATCAAGGTGAATCAGAAACATTGTGCGGTCcagctcctctactctcctctggcCTGCTATCACTTCAGGGATCAGGAGAACAAGATGGAGGGTCATTTATGGATGACAACGATCCTCCTGTCCTTCTGTCCTCTGATCCTCCTGTCCTTCTCTCTTTCAGATCATCTGTTTACTGAACTCTCCCAACATCCCAACTGCAAAGACAGACCTCTGTCCATACAGAGTGTATCTCTCCACAGCAGAGTGTCCATCTCCTGCCCCAACATGACAGGAGACGATCTGAGATTCCACCTCTTTTTGAACCAGTCCCTCGTTCACACCACAGTGCTCAAGAGGAACCAGAATCACACCAGAAACAACCAATCAGACACCTGGGTCCAGTTCTACCTAGCTGAACAGAACCTGAACCACAACCTAACCAACCGCTATGTGTTCACGGTCAATGGAACAGGACTGTACATCTGCAGAGCAGAGAGGCTGTGGTCACCCCCTTATAAAGTGGACTGTGTTCACACTCTACTGATAACAGAGAAGCAGTGTCTGAAACCCCACGATCCACTGACCACTTGTGTGCAGGATCATAATCCCCTCCTTCTGTGTCTGCTGCTGGTGGGATGTGGGGTGCTACTCCTCTACAGCACCATCCTCACCATCACCGTCGTCCTCATCTGGAGGAAGCTGAAGAAGGAAGTGTCTGCTCAGACTACATACCTGAACATAAGGCTAGGAGAGAAGAGAGTTCCTCAGAGAGTCCAGTATCCAGTCACCGGAAGGTTCTGACGCTGACCTTCCTAAGGCTGTGCGTGCACGACttttgtgcactatgtagggaatagggtgccatctgggacttAGCCGATTGGCTCTTCAATCAATCTACTGACGCATTCAACGGCTCGAACGGCTTCACGATGCATTGGAACGGCTTCATACTGCATTGGAACGGCTTCATACTGCATTAGAATGGCTTCATACTGCATTAGAATGGCTTCATACTGCATTAGAACGGCTTCACGATGCATTGGAATGGCTTCATACTGCATTGGAATGGCTTCATACTGCATTAGAACGGCTTCACGATGCATTAGAACGGCTTCACGATGCATTAGAACGGCTTCACGATGCATTGGAATGGCTTCATACTGCATTGGAATGGCTTCCTACTGCATTATAATGGCTTCATACTGTATTAGAATGGCTTCATACTGCATTAGAATGGCTTCATACTGCATTAGAACGGCTTCACGATGCATTGGAATGGCTTCATACTGCATTGGAATGGCTTCATACTGTATTAGAATGGCTTCATACTGCATTAGAATGGCTTCATACTGCATTAGAACGGCTTCACGATGCATTGGAATGGCTTCATACTGCATTGGAATGGCTTCATACTGCATTAGAATGGCTTCATACTGCATTGGAACGGCTTCATACTGCATTAGAATGGCTTCATACTGTATTATAATGGCTTCATACTGCATTAGAATGGCTTCATACTGCATTAGAATGGCTTCATACTGCATTAGAATGGCTTCATACTGTATTAGAATTGCTTCATACTGCATTAGAATGGTTTCATACTGCATTAGAATGGCTTCATACTGCATTAGAATGGCTTCATACCACATTAGAATGGCTTCATACTGCATTAGAATAGCTTCATACTGCATTAGAATGGCTTCATACTGCATTAGAATGGCTTCATACTGCATTAGAATGGCTTCATACTGCATTGGAATGGCTTCATACTGCATTGGAACGGCTTCATACTGCATTAGAATGGCTTCATACTGCATTAGAATGGCTTCATACTGCATTAGAACGGCTTCACGATGCATTTGAATGGCTTCATACTGCATTGGAATGGCTTCATACTGCATTAGAACGGCTTCACGATGCATTAGAACGGCTTCACGATGCATTAGAACGGCTTCACGATGCATTGGAATGGCTTCATACTGCATTGGAATGGCTTCCTACTGCATTATAATGGCTTCATACTGTATTAGAATGGCTTCATACTGCATTAGAATGGCTTCATACTGCATTAGAACGGCTTCACGATGCATTGGAATGGCTTCATACTGCATTGGAATGGCTTCATACTGTATTAGAATGGCTTCATACTGCATTAGAATGGCTTCATACTGCATTAGAACGGCTTCACGATGCATTGGAATGGCTTCATACTGCATTGGAATGGCTTCATACTGCATTAGAATGGCTTCATACTGCATTGGAACGGCTTCATACTGCATTAGAATGGCTTCATACTGTATTATAATGGCTTCATACTGCATTAGAATGGCTTCATACTGCATTAGAATGGCTTCATACTGCATTAGAATGGCTTCATACTGTATTAGAATTGCTTCATACTGCATTAGAATGGTTTCATACTGCATTAGAATGGCTTCATACTGCATTAGAATGGCTTCATACCACATTAGAATGGCTTCATACTGCATTAGAATAGCTTCATACTGCATTAGAATGGCTTCATACTGCATTAGAATGGCTTCATACTGCATTAGAATGGCTTCATACTGCATTGGAATGGCTTCATACTGCATTAGAATGGCTTCATACTGCATTAGAATGGCTTCATACTGCATTAGAATGGCTTCATACTGCATTGGAACGGCTTCAGAGTACATTATTCTTACAGACTTTAAGTAAAGTTTTACCAATCAGGATGTTTGTATTAAAGAGTGTTCACCGACACTGTATAATCTCTGTGTTGTTCCATAACAATGACTCCCTCCCTATTGGTTAATGCTTTGTACGAAGCTGTTTGTGTTTGAAAAGTAAAGGAAGGAGAAAGTTCATGTGAGTTTCACTTCGTACCCTCACGTTAGGCCCTCACCACACGTTCTTCCTGACATGC
>TU346042
GacccagatctataacatcactaacagaaccatactatcctagcctggtccgagatctataacagaaccatactatcctagcctggtcccagatctataacagaaccatactatcctagcctggtcccagatctataacacaaccatactatcctagcctggtcccagatctataacagaaccagactatcctagcctggtcccagatttataacgaaaccatactatcttagcctggtcccagatctgtaacagaaccatactatcttagcctggtcccagatctacaacagaaccatactatcctagcctggtcccagatttataGCAGAACCATACATtccttgcctggtcccagatcttatTTCTTATTACGGGCTTCTTGTGTGTTCTGATTGGTTCACAGAGAAGCAGTGTCTGAAACCCCACGATCCACTGACCACTTGTGTGCAGGATCATAATCCCCTCCTTCTGTGTCTGCTGCTGGTGGGATGTGGGGTGCTACTCCTCTACAGCACCATCCTCACCATCACCGTCGTCCTCATCTGGAGGAAGCTGAAGAAGGAAGTGTCTGCTCAGACTACATACCTGAACATAAGGCTAGGAGAGAAGAGAGTTCCTCAGAGAGTCCAGTATCCAGTCACCGGAAGGTTCTGACGCTGACCTTCCTAAGGCTGTGCGTGCACGACttttgtgcactatgtagggaatagggtgccatctgggacttAGCCGATTGGCTCTTCAATCAATCTACTGACGCATTCAACGGCTCGAACGGCTTCACGATGCATTGGAACGGCTTCATACTGCATTGGAACGGCTTCATACTGCATTAGAATGGCTTCATACTGCATTAGAATGGCTTCATACTGCATTAGAATGGCTTCATACTGCATTAGAATGGCTTCATACTGCATTAGAATGGCTTCATACTGCATTGGAATGGCTTCATACTGCATTAGAATGGCTTCATACTGCATTAGAATGGCTTCATACTGCATTAGAATGGCTTCATACTGCATTGGAACGGCTTCAGAGTACATTATTCTTACAGACTTTAAGTAAAGTTTTACCAATCAGGATGTTTGTATTAAAGAGTGTTCACCGACACTGTATAATCTCTGTGTTGTTCCATAACAATGACTCCCTCCCTATTGGTTAATGCTTTGTACGAAGCTGTTTGTGTTTGAAAAGTAAAGGAAGGAGAAAGTTCATGTGAGTTTCACTTCGTACCCTCACGTTAGGCCCTCACCACACGTTCTTCCTGACATGCCAtttgggacccctCCGAGACATTTTCACACCTATTCTAGGAAATCAAAGATCATGTCTACTGCGTATCACTGAGCAGTTTCACACAACCTCACATACTGTAAGCACACATAAATATTGAGTGATGGATGGTAAATATGTGGATAATCCCTCCATTAAAATGGCACTCTGTTCCATAAATAGGGCCCTACTTTTATCCAGGGCCcataagggaatagggtcccatttcaGACAAACCCCT

Function

NR:

description
PREDICTED: T-cell-specific surface glycoprotein CD28-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036975350.1 False 2956 mRNA 0.44 4 83647331 83770550
TU346042 True 1516 lncRNA 0.45 4 83646979 83667054

Neighbor

gene id symbol gene type direction distance location
LOC110505466 LOC106586938 coding downstream 3964 83639090 ~ 83643367 (-)
LOC110520669 LOC106586940 coding downstream 18050 83626569 ~ 83629281 (-)
abcb6b LOC106586936 coding downstream 34452 83546922 ~ 83612879 (-)
ttll4 ttll4 coding downstream 107976 83483453 ~ 83539355 (-)
LOC110504940 LOC106586933 coding downstream 453625 82905486 ~ 83193706 (-)
abi2a LOC106574254 coding upstream 145322 83915872 ~ 83986617 (-)
LOC110504983 LOC106586944 coding upstream 303388 84072966 ~ 84220262 (-)
si:dkey-230p4.1 LOC106591428 coding upstream 462177 84232727 ~ 84301357 (-)
LOC110520676 LOC106562996 coding upstream 534753 84305303 ~ 84308440 (-)
LOC110516739 LOC100708085 coding upstream 542165 84312715 ~ 84624269 (-)
G304763 NA non-coding downstream 1793 83645109 ~ 83645538 (-)
G304762 NA non-coding downstream 2526 83644492 ~ 83644805 (-)
G304754 NA non-coding downstream 2884 83643371 ~ 83644447 (-)
G304701 NA non-coding downstream 14236 83632791 ~ 83633095 (-)
G304700 NA non-coding downstream 14652 83632358 ~ 83632679 (-)
G304896 NA non-coding upstream 94538 83865088 ~ 83866045 (-)
G304913 NA non-coding upstream 122801 83893351 ~ 83898110 (-)
G304924 NA non-coding upstream 136079 83906629 ~ 83906828 (-)
G305058 NA non-coding upstream 149553 83920103 ~ 83920305 (-)
G305059 NA non-coding upstream 149945 83920495 ~ 83920735 (-)
G304264 NA other downstream 695975 82950069 ~ 82951356 (-)
G304204 LOC107714908 other downstream 795580 82831370 ~ 82851751 (-)
LOC110505453 LOC106586926 other downstream 899593 82744854 ~ 82747738 (-)
pard3bb LOC106601765 other downstream 1333250 82297732 ~ 82586082 (-)
G303665 NA other downstream 1623880 82022829 ~ 82023451 (-)
G305189 NA other upstream 410501 84181051 ~ 84182035 (-)
G304756 NA non-coding upstream 4143 83671197 ~ 83717103 (-)
G304776 NA non-coding upstream 11282 83678336 ~ 83680406 (-)
G304781 NA non-coding upstream 28797 83695851 ~ 83731922 (-)
G304782 NA non-coding upstream 29941 83696995 ~ 83739984 (-)
G304785 NA non-coding upstream 36470 83703524 ~ 83722586 (-)

Expression


Co-expression Network