si:dkey-230p4.1 (LOC106591428)


Basic Information

Item Value
gene id si:dkey-230p4.1
gene name LOC106591428
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 84232727 ~ 84301357 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965273.1
tgcagttatgctgcactctatatctgcaggtatactgcactctgactgcaatctttttcAATAAGGAAAATTTCACCTGGGAACATTCTACAACTCTGTGGTAGAACCAAAAACAGTCAACTCTGTGGTAGAACCAAAAACAGTCAACTCTGTGGTAGAACCAAAAACAGTCAACTCTGTGGTAGAACCAAAAACAGTCAACTCTGTGGTAGAACTGTGGCACCTGCTGGACACGCTCACCATccactaaactagaggagactactCCTCCGGCCACACGGTGGCGCTGTCTGCGCATGAAGGGATTCTCTTTTTACATAGCAGCGTCTGCATGGTTCCTCTGTTTTTATGTTAAGAGGTAAAGTTTACTGTTTTGAATCCTGTTGTGAGGAAGTGTTTAGGATCATCAAAAGGAGTTGAATAAATTTCATGCATATGTTTCATTTGTTACAGAAAGAGTTTGTTTACATTCACAGTATGTTTCGAAGGATCTGCTTTTAAAGCTTCCTGAGTCTCTGGGGCGGGTTGACTGTCAAGGACCAGGATGGAGACGGCGCTGTTGGATggctggaaggaggagagggcgGAGCTGAGGGCGGAGGTGTCTCGCCTGCAGAATGAGCTGGCTGAGAGTCAtgctgagagagaggagctggagtCACGTGCCCAGGCCCTCACAGACAGGCTGTCCCAGTCCCTGGACCCGTCCCTGTGTGTGCCTCTGCGCCCGGACAGGGACTTGAGAAGGAAGATGCgagatggcagagagagggaggcccGGCAGGCTCTACTCATCCACAAACTGCAGAACAAGGTGGTTGAATACCGGGATCGCTGCCAGGGTTTGGAATACCAGGTGAAGACTGGAGAAAGAGAGCTCCTGAAACGTGAGAGGAGGATCAGGGATGAGCACAGTGACTCCTTAGAGAGCGCCCTCATCAGGCTGGAGGAAGAACAGCAGAGGAGTGTAGGGCTGGCAGAGCTGAACTCTCTCCTTCGTGGCCAGCTCAGCCAATCAGGCCAGGCAAATGAAGCACTGAGCGAGGACCTTTGCAAACTGACTACCGATTGGTCCAAAGCGGTGGAGGAGGCGGGACTGAGGGAGATGGAGtggcagaaagagaaagagcgACTGACCGGTCATGTCGACCGGGGGCAGAGTCGTCTGATGTCCATGTGGGGAGATGTGGTCACTCTGAGACGACACTGTCACACTGTGAAGACTGCCACTGACAGGGACCTCTGGGAGCTTAGAGCTGAGTTCTCtcgtctgtcttcctctctcctctcccactgtgGTTCAGTGGTGTCTCTATCTCTACGGCCCAGTGACCCTACAACCAGCCTCCATCCTGCTCCCCGCTCTGCCTCCGCCCCACCCCACTCCTCCACCCTaggcccacctcctctctcctccaccctaggCCCTCTCTCCTTGCAGGATCTGGACCACgaccagaaggagagagagcgggagagagaggagagcgagagggagctgACAGAGCTCAGAGCCCTCTATGAAGCTGAGACCCTGCATCTGAATAACAGGATCTCAGAGTTATCTCGTACCATTCAGGATCAAAAGATAGAacgacaggaggaggagaggaagatggagcGAGGGATGGCTtcggagaagaaagaggagagggaaaaggagagacagacaaacacagagagaactCTAGAGTGTGTCTATCAGGCCGTCCTAAAACTGTCCAAGGTGCTGAGCTCCCAGAGTCTGGATGGACAGAGTAGCAGTAGCCatactctgtctctgtccagtgaTTGGTTAGGACCAGACCTGTTGACTACAGGGCTAACCCAGGTGCTGGCTGTATTGGCCCAGGCTGAGACCAACCTGCTGTGGCGGCACCAGGAAGCACAGGAGGCTGCGGCTAGCCTGCGGAGGCTGGGTGAGGAGAGAGCAGGACTggaacagagagtcagacagCTGGAGACGGACACAGAGGAGAGGCAGAAACAGAGCCTGTATGAAGAACAGGAGCTCACTCACATTcaggacatgttactcagtgagagagagatggtgggctCCCTGAGGAGTCAgttggaggaagaagagagacagagtgaggagaggaggaaggagaacgATCGActgagactggagagagagagggaggaggagcagaggaacgAGCTGGAGAGCGATAGGCAGAGACGGTTGGAGGCGGACCTAGTAGAGAATGCCCATCTCAGTGAGCGTGAGGCTTGTATCCGCATGGAGCTGCATGTTCTACAGGGAGCGCTGCAGAGAGAACAGCTGGAcagggagagggcagaggaggaagCTGCTGATGCTAGGGATGCGCTAAGCAAGgCCCGTGAGTCAGTGTTAACCCTTTCGTCCGGTCAAACCCTTCTGAAGAGAGAAGTGTCAGAGCACCGTGACGCCCTAGAGAAGATGGCTGCCTTAAACGAAGCCTTAGCCAAGGACAAGAGAGAGCTCAACGCCCAGGCACTACAGCTTGAAATGGAGATGGCTGACCTCCAGGTCCAGCTACAGGGACTAGAGTCAAAGGTCGTGACCCTTCGTAGGGAGCTTCACACCCAGTCCAATGAGAGCACAGAGTTAAGGACTCGTAGAAGATCAGAGCTCAGCTCCCTGCAGCAgctcagggacagagagagagagctggagagagaggtggagaccctacgagaggagaaggagagagaggtggagaccctacgagaggagaaggagagagaggtggagaccctacgggaggagaaggagagagaggtggagaccctacgagaggagaaggagagagaggtggagaccctacgggaggagagaggaagggttggAAAACGGCTGGAAGAGCTGTCTGTGCAGCACGGTGCAGTGTGTGGGGAGTTGAGAGGTCTGCAGGCAGAGCTGTGCCAAGCGACAGAGCAGcagaggagggcagagagagagactgaggaactACTAAGAGAGAACCAGGATGTGGCGGGGACTGTCCTCTcactggagagagagcgagaccagcTGGGGCAGGACATTGAGGAACTCAGGATCCTGACGGTCTCCCAGCAGCACCAGTTAACCCAGACCCAGCAGCAGGTCTCAGGGCTGGAGGTAGAGAGTAGGCAGCTACAGATCCAGGTCACCACTCTGCTCCAGACCAAGGATGTGATGCAGGGGGAGGTCCAGTGtctgaggggagagatggagagagggaggagccagacagagaaggagaaacaggaggagcgagaggagagagagaggagccagagagagagggaggtctgGCAAGCTGACCTGGAAAGGCTGCAGTTACTGCTAGATCAGACAACAGAGAAAGGGACAAGacaagaggaggaatggagagaagagagggaaggatggcagagagagaggatggcgTTGAGctcagagctggggaacagagatggagaggtggtggCGATGAGGAACAGGATGGAGGGattggagaaggagaaggaggagatgtCGTGTCTGTTGGAGGAGAGAGACGCAGAGCTGGAGAGACTAACCGCAGAACACAAGAGCCACCAACACAGCGAGAGAAAactgaaggaggagggggagagatggagagagagagcagaggagggagagagatggagggagatagcagaggagagagcagaggagggagggagatggagggagaaagcagagagatggagggagaaagcagaAAAGAGAGCagaagaaggggagagatggagggagaaagcagaggagagagcagaagaggtagagagatggagggagaaagcagaggagagggagagagaaaatgcgAGACTGAATCAGAGGCTCACTGAAAAAGAGAAGAATAACAGTGAACAACTAAAGGCTGTGAAAAGAGAGAGTGACAAGATAGCAGAACAACTGAAAAAGGAGGAGGTAGATGGAAGGAAGAGATTAGAGAATATAGAGGAACTGAAAACTAGAATGATCTCActggaggaagaaagagacaatctggaggcagaactgaagAAAACTGAACTATTGGAGAACAAAATGTTTGCCgtggagagagagaactcacagctcagagagagggagagagaaagataccaAGAGAGtctgagaaagaggaggaaggagtcGGAGGGaagggagcgagaggagagactgagaggaaagctggagctgagagaaggagaggttgaGGTCTTGAGAGTGAAGTTGATTGTCTtagaagaagagagggatgaggggaagagagagcagcagacactagaggggaagatggagagacagatggcTCAgctgagggaaagagaagaggaggtaGATAAactgagggaggaggaagagaaggccgGGGCTAGGCTacagcagagagaggaagagttgaGAAATCTGAAAGACAGAATGCACCAGTCAGAGCTCTCAGAGAAACACGTCTCAGACCTTCTGATAGAGACGGAGTCTTTACTAGAGACCGAGAGGAGTCAGAGCAGAGACAGGGATAAAGCACTACACCTGGccaaggaggagagggagagggagagagaacaggcacAGGAAACAGAGCAGCACAACGTGAGACTGGAAGAGGAGGTGAAGAAATGGAAAGAAAGAGTGGAGGAACGGATAAAAGAAGTAGCAAGGCTCTCACAGctcctgaaggagagagaggaggaggactttAGGGTGAGAGCGGTAGAGAGcggtggagaaagacagagacagaaggaggaaCTGAaaaggagtgaggaggagagggagagacaggaggacgTATTGAGGAGGAACAAGGAGGAGAGGGAATGGTTGGGTGCCCAGCTGAAAGAGGagcagacggagggagagagactgaggtcCAGACTAGAGGAGGTGCAGAGAGGACAACGCCTCCTGCAGGAGGATAGAGGATGTCGTGTAGAGAGGCTGGGGGCTCAGGTTAAagccctggaggaggagagagaccacCTCTTAGCTGAGatcaggaagaaggagagagaggctgggatcCTGAAGGATGAGactcacagagagaggagagagaaggagaggactggCTCCTCACTgagaaggatggaggaggagttGAAGGAGAGCAGGGAGGCGCTGGCCCTCAGTCTGGCCACCCTGAAGGAGCAGGGAGCAGAGATGACCAGGAGCAGGGAGAGAAGCAGGAAGGAGGtgcaggagaaggagggggacaACCAGAAGATGAGAGAGGGGCTGAAGACAGCCATGCAGGAGATGGCTATCCTGAACCAGCTGCTGGAGGAGAGccacagggagggggagaggctaAGGAGCCTCCtgcaggagaggaaagaggagatggTGAAGAGCAGGGAGGAGAGCCTGCGTGCTGCccggggggaggtggaggagctgCGAGGGAGGACCAGGGCTGTGGAGCAAGAGAaaagggaggtggagagaaagctcagagacagagaggaggagatggaggaggcagtgagagagaatgacaggagacagaaggagatggaggaggtgttGGGAGAGAAGGAGGCTGAGCTGACCACCACCAGGGCTAGACTGGATGTCCTGGAGGAACAGAGGACAGAGCTCAGATGTCTGGCTGCTGAGAAGGCAGTTACACAGctcagagagagaatcagagtggtggagggagagatggagggagtgagagaagagaagaagagcgaGATTGAGAGGCTTCAGCGGAAGATGGAGAAGttgagacaggaagaggaggagaggagggagagtctgAAACTAAGGGAGCAGGAGAGCCTGAGGCGTGTAGAGTTAGTCACGGAcatgctgagagagagggagacggagctggagagggtgagagagaaatcttacagagaggagaaagataaactggaggagaggaagagagacacagaggaagtgAACCTGCAGAGTCTGGAGAAAGAAGAGACAGATGAACAGAGGAGACTGATAGAGCCTGGGGAACAAAGGGAGGCGACAGaccagaagagaggagaaagaagtcGGGAGGGTCCAGGAAGAGAGGTCTGGCTTCAGGACGAGGTAGATACTCTGAGGAAGAGAGTGTCCTCCCAGCTCCTGGAcacagaggaaagggagagactgttgagacagagagaagaggagggccAGGAGAGTCTTAGActgttgagacagagagagacagagctttacaccctgagagagagggtagaggaactCGGTAAGGACAGAGACCGTGTCACAGCTGCCCTGGAGAAGACTGAGGCTACCATGATTGGCTACCGGGACAGAGCCCACCAACAGGAGCAAAGCAGAGGGGCGGGATCTGAGAGGGCCGTGGCCCAGCTAGAGATGGACCCCCTGGTCCAGGAACGTCTGTCTGTCCTGCAGAGGGACGTGGCCCAGCTAGAGATAGACCCCCTGGTCCAGGAACGTCTGTCTGTCCTGCAGAGGGCCGTGGCCCAGCTAGAGATAGACCATAGACGGCTACAGAGGAGGAACACACAACTGGAACAACGCACTGACAGACTGAAGACTGAGAGGAAACACCTCAGAGAGATGCTGACACAGACGGAGAGAGGATCATCACGTGATGAGTTGTCCTCCAGCAGCCTCAGAGACAGAGCTCAGGAGTCCAGGGGCTTGGTTGGTCTGGAAACAGAGGAGTTGGGACTCCTTAGGACCAAGGTGAAGGAGCTAGAGGACCAGCGCGCCTCCCTGAAGCGATTTCTCCAACCGTTCAAAAGAAGAGAAGCCGTGTACACAGAGTGTATTTTGGGGAGGTGCACGGTCACTGGGCGGCCGGACTATTACAGTTCTGTAGCTTTGGACTCTGAATCACGCAGAGTACACTACCTACAGCTGACACTCGTCCTCGACCACCGGGAGAGGGTGGAGTTTATCCAACACTCCTCCAGGAACAACCAATGGCTGGTGTCTCTTCGCCAAGACTTGACTGATTCTCTGGTGTTGGTCTCGCAGCAACCAATCCCCTCTGTGCTGGAGTCAGAGACACACCGATTGGATAGGAGTgtcagggaggaggagatgagattGTCTCTCAGTCAGAGTTGAAGATGAAGCACAGAATGTTTGcctccgaaatggcaccctattgtcttccagggctctggtcaaaagtagtgcactatatctggaatagggtgccatttgggtctaaagtagtgcactatatctggaatagggtgccatttgggtctaaag
>TU346768
TGTTGTGAGGAAGTGTTTAGGATCATCAAAAGGAGTTGAATAAATTTCATGCATATGTTTCATTTGTTACAGAAAGAGTTTGTTTACATTCACAGTATGTTTCGAAGGATCTGCTTTTAAAGCTTCCTGAGTCTCTGGGGCGGGTTGACTGTCAAGGACCAGGATGGAGACGGCGCTGTTGGATggctggaaggaggagagggcgGAGCTGAGGGCGGAGGTGTCTCGCCTGCAGAATGAGCTGGCTGAGAGTCAtgctgagagagaggagctggagtCACGTGCCCAGGCCCTCACAGACAGGCTGTCCCAGTCCCTGGACCCGTCCCTGTGTGTGCCTCTGCGCCCGGACAGGGACTTGAGAAGGAAGATGCgagatggcagagagagggaggcccGGCAGGCTCTACTCATCCACAAACTGCAGAACAAGGTGGTTGAATACCGGGATCGCTGCCAGGGTTTGGAATACCAGGTGAAGACTGGAGAAAGAGAGCTCCTGAAACGTGAGAGGAGGATCAGGGATGAGCACAGTGACTCCTTAGAGAGCGCCCTCATCAGGCTGGAGGAAGAACAGCAGAGGAGTGTAGGGCTGGCAGAGCTGAACTCTCTCCTTCGTGGCCAGCTCAGCCAATCAGGCCAGGCAAATGAAGCACTGAGCGAGGACCTTTGCAAACTGACTACCGATTGGTCCAAAGCGGTGGAGGAGGCGGGACTGAGGGAGATGGAGtggcagaaagagaaagagcgACTGACCGGTCATGTCGACCGGGGGCAGAGTCGTCTGATGTCCATGTGGGGAGATGTGGTCACTCTGAGACGACACTGTCACACTGTGAAGACTGCCACTGACAGG

Function

NR:

description
rootletin-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965273.1 False 7192 mRNA 0.54 25 84232727 84301357
TU346768 True 856 TUCP 0.55 7 84281483 84300976

Neighbor

gene id symbol gene type direction distance location
LOC110504983 LOC106586944 coding downstream 12465 84072966 ~ 84220262 (-)
abi2a LOC106574254 coding downstream 246110 83915872 ~ 83986617 (-)
LOC118964336 NA coding downstream 462177 83646979 ~ 83770550 (-)
LOC110505466 LOC106586938 coding downstream 589360 83639090 ~ 83643367 (-)
LOC110520669 LOC106586940 coding downstream 603446 83626569 ~ 83629281 (-)
LOC110520676 LOC106562996 coding upstream 3946 84305303 ~ 84308440 (-)
LOC110516739 LOC100708085 coding upstream 11358 84312715 ~ 84624269 (-)
xrcc5 LOC106586961 coding upstream 535518 84836875 ~ 84868307 (-)
LOC118964339 NA coding upstream 602981 84904338 ~ 84907876 (-)
LOC110520668 LOC106586955 coding upstream 611195 84912552 ~ 85062818 (-)
G305323 NA non-coding downstream 4235 84227641 ~ 84228492 (-)
G305149 NA non-coding downstream 144436 84087997 ~ 84088291 (-)
G305140 NA non-coding downstream 160208 84072271 ~ 84072519 (-)
G305136 NA non-coding downstream 162891 84069606 ~ 84069836 (-)
G305359 NA non-coding upstream 38465 84339822 ~ 84340038 (-)
G305360 NA non-coding upstream 47525 84348882 ~ 84349148 (-)
G305363 NA non-coding upstream 64858 84366215 ~ 84366492 (-)
G305364 NA non-coding upstream 66838 84368195 ~ 84368433 (-)
G305189 NA other downstream 50692 84181051 ~ 84182035 (-)
G304264 NA other downstream 1281371 82950069 ~ 82951356 (-)
G304204 LOC107714908 other downstream 1380976 82831370 ~ 82851751 (-)
G305570 NA other upstream 428248 84729605 ~ 84731089 (-)
G305585 NA other upstream 456585 84757942 ~ 84758775 (-)

Expression


Co-expression Network