LOC110520676 (LOC106562996)


Basic Information

Item Value
gene id LOC110520676
gene name LOC106562996
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 84305303 ~ 84308440 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021598092.2
GCCAATTAGAGTTTAAAACACCTATGCGCGCTCCTGGTCGACAAACAGAAGACGGAGAGAGTTGAAAAATAAGCGCAAACATTTAGCAATCTGTAAATTAGTACATATCAGAGCATTAACTAGCTACACAATGTCTGAAGAAAAGCCAAAGGAAGGAGTGAAGACTGAAAACGACCACATCAACCTTAAGGTTGCAGGTCAAGATGGGTCAGTAGTCCAGTTCAAAATTAAAAGGCACACTCCGCTCAGCAAGCTGATGAAGGCGTACTGCGAAAGACAGGGTTTGTCAATTAGACAGATACGGTTTAGGTTTGACGGACAGCCAATCAACGAGACCGACACACCTGCACAGCTTGAGATGGAAGATGAGGATACTATTGATGTATTTCAACAACAGACTGGAGGAGGCTCCTTCCTCTCAGAGGCTTCTCTTAAAGGTGTATGGACCCTCTGAGGACAGAAACACAGTTGATGAGcagcaactttttttttttttattaaataatGGTCCTGCTTTTTTTTGTGTGATTGATCTGCTCGTAGCCATGGTCTTATTCTTTTCGAGCTGGATTTCAATgccaccaatccacaaatgtcttgtttatATTCATATTGAGGATGGACTATAAACTGCTTGTTTTGGAggagaatgtgtttgtttcacaCACGGGACAATGGGGATGTGGGGGGTTCAACTCATTCAGGCTTTGTCCCAACTGGCTCTCTATTCCTCTTATAGTGCTCTACACTAAAcaaagtagggtgccatttgggacacatattaAATCTACCATAGGTTGAGGGACTTAGTGTTGAACAGGTCTCATAATATgcaaaattatattttttatttttgtctgCTGTTTTTAAGTACATTTTGCAAAATATACAGTCCAAGTGATCAATTGTAATTTTAAACCTGTACAATGTGTTGAAGGAATATTGGTGAATGGGGTGCTCTACTGCTGGTGCCATTAGATTGAATTGCTTTGTGTCTCTGGAACAAAGGCTTTACTAAAGTGAACAGAAACGTCTATGATGGAAAAGAGTTTCAGGTCTATTTTCAACATCGCTTGAAAGAATGCAACTTACCTTTCACATGTCTGTTTGGTTTCTACCCCCTCACCCCTTCCACACAGATTTAAGGGAAGTAGTTGAGCTCCTGGTTTTAGCCCATCCCTCAATCAATATTTTGTGACAAAATAAAAGGGAATCCACCATGACttcaacaacctttgacctttttgTTTCTAATCAGACTTGATGAATCTTCCCACCTGCCTTCAGACTGTTGTGGTGGACTTGAATAGGCAGCATGGGTCCACTAGTCCTTATGTTGCTCTAATGATTTGTACATTGTCTTTTACTACTGTATACAATAAATATAGTTTGGTACTCAG
>TU346797
CGCGCTCCTGGTCGACAAACAGAAGACGGAGAGAGTTGAAAAATAAGCGCAAACATTTAGCAATCTGTAAATTAGTACATATCAGAGCATTAACTAGCTACACAATGTCTGAAGAAAAGCCAAAGGAAGGAGTGAAGACTGAAAACGACCACATCAACCTTAAGGTTGCAGGTCAAGATGGGTCAGTAGTCCAGTTCAAAATTAAAAGGCACACTCCGCTCAGCAAGCTGATGAAGGCGTACTGCGAAAGACAGGGTTTGTCAATTAGACAGATACGGTTTAGGTTTGACGGACAGCCAATCAACGAGACCGACACACCTGCACAGCTTGAGATGGAAGATGAGGATACTATTGATGTATTTCAACAACAGACTGGAGGAGGCTCCTTCCTCTCAGAGGCTTCTCTTAAAGGTGTATGGACCCTCTGAGGACAGAAACACAGTTGATGAGcagcaactttttttttttttattaaataatGGTCCTGCTTTTTTTTGTGTGATTGATCTGCTCGTAGCCATGGTCTTATTCTTTTCGAGCTGGATTTCAATgccaccaatccacaaatgtcttgtttatATTCATATTGAGGATGGACTATAAACTGCTTGTTTTGGAggagaatgtgtttgtttcacaCACGGGACAATGGGGATGTGGGGGGTTCAACTCATTCAGGCTTTGTCCCAACTGGCTCTCTATTCCTCTTATAGTGCTCTACACTAAAcaaagtagggtgccatttgggacacatattaAATCTACCATAGGTTGAGGGACTTAGTGTTGAACAGGTCTCATAATATgcaaaattatattttttatttttgtctgCTGTTTTTAAGTACATTTTGCAAAATATACAGTCCAAGTGATCAATTGTAATTTTAAACCTGTACAATGTGTTGAAGGAATATTGGTGAATGGGGTGCTCTACTGCTGGTGCCATTAGATTGAATTGCTTTGTGTCTCTGGAACAAAGGCTTTACTAAAGTGAACAGAAACGTCTATGATGGAAAAGAGTTTCAGGTCTATTTTCAACATCGCTTGAAAGAATGCAACTTACCTTTCACATGTCTGTTTGGTTTCTACCCCCTCACCCCTTCCACACAGATTTAAGGGAAGTAGTTGAGCTCCTGGTTTTAGCCCATCCCTCAATCAATATTTTGTGACAAAATAAAAGGGAATCCACCATGACttcaacaacctttgacctttttgTTTCTAATCAGACTTGATGAATCTTCCCACCTGCCTTCAGACTGTTGTGGTGGACTTGAATAGGCAGCATGGGTCCACTAGTCCTTATGTTGCTCTAATGATTTGTACATTGTCTTTTACTACTGTATACAATAAATATAGTTTGGTACTCA

Function

NR:

description
uncharacterized protein LOC110520676

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021598092.2 False 1400 mRNA 0.40 4 84305303 84308440
TU346797 True 1373 TUCP 0.40 4 84305304 84308414
Loading

Neighbor

gene id symbol gene type direction distance location
si:dkey-230p4.1 LOC106591428 coding downstream 3946 84232727 ~ 84301357 (-)
LOC110504983 LOC106586944 coding downstream 85041 84072966 ~ 84220262 (-)
abi2a LOC106574254 coding downstream 318686 83915872 ~ 83986617 (-)
LOC118964336 NA coding downstream 534753 83646979 ~ 83770550 (-)
LOC110505466 LOC106586938 coding downstream 661936 83639090 ~ 83643367 (-)
LOC110516739 LOC100708085 coding upstream 4275 84312715 ~ 84624269 (-)
xrcc5 LOC106586961 coding upstream 528435 84836875 ~ 84868307 (-)
LOC118964339 NA coding upstream 595898 84904338 ~ 84907876 (-)
LOC110520668 LOC106586955 coding upstream 604112 84912552 ~ 85062818 (-)
G305323 NA non-coding downstream 76811 84227641 ~ 84228492 (-)
G305149 NA non-coding downstream 217012 84087997 ~ 84088291 (-)
G305140 NA non-coding downstream 232784 84072271 ~ 84072519 (-)
G305136 NA non-coding downstream 235467 84069606 ~ 84069836 (-)
G305359 NA non-coding upstream 31382 84339822 ~ 84340038 (-)
G305360 NA non-coding upstream 40442 84348882 ~ 84349148 (-)
G305363 NA non-coding upstream 57775 84366215 ~ 84366492 (-)
G305364 NA non-coding upstream 59755 84368195 ~ 84368433 (-)
G305189 NA other downstream 123268 84181051 ~ 84182035 (-)
G304264 NA other downstream 1353947 82950069 ~ 82951356 (-)
G305570 NA other upstream 421165 84729605 ~ 84731089 (-)
G305585 NA other upstream 449502 84757942 ~ 84758775 (-)

Expression

LOC110520676(LOC106562996) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 400.
End of interactive chart.

LOC110520676(LOC106562996) Expression in each Bioproject

Bar chart with 21 bars.
LOC110520676(LOC106562996) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1000.
End of interactive chart.

Co-expression Network