G214995


Basic Information

Item Value
gene id G214995
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 497860 ~ 501722 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU244592
TTATGTTtctgtgtaatacagtatgttgttaccattatgtttctgtgtaatacagtatgttaccattatgtttctgtgtaatacagtatgttaccattaTATTTCTGTGTAATGCAGTATGTTACCATTATATTTCTGAGGAATACAGTACTTTGTTACCATGTTGTTTCTGTGTAATGCAGTactttgttaccatgttgtttctgtgtaatgcagtactttgttaccatgttgttcctGTGAAATGCAGTACTTTGTTACCATGTTTTTTCTGTGTAATGCAGTactttgttaccatgttgtttctgtgtaatgcagtactttgttaccatgttgtttctgtgtaatgcagtactttgttaccatgttgttcctGTGTAATGCAGTACTTTGTGACCATGTTGTTCCTGTGTAATGCAGTactttgttaccatgttgtttctgTGTAATGCAGTATGTTATCATTATGTTTCTGTGTAATACATTATGTTGTTACCATTATATGtctgtgtaatacagtatgttaccatcaTATTTCTGTGTAATACAATATGTTG
>TU244593
gtgtaatacagtatgttgttaccattatatttctgtgtaatacagtactttgttaccatgttgttcctgtgtaatgcagtactttgttaccgtgttgtttctgtgtaatgcagtactttgttaccatgttgttcctgtgtaatgcagtactttgttaccatgttgtttctgtgtaatgcagtactttgttaccatgttgttcctgtgtaatgcagtactttgttgccatgttgtttctgtgtaatgcagtactttgttaccatgttgtttctgTGTAATGCAGTACTTTGTTAATATGTTGTTTCTGTGTAATGCAGTactttgttaccatgttgttcctGTGTAATGCAGTACTTTGTGACCATGTTGTTCCTGTGTAATGCAGTactttgttaccatgttgttcctGTGTAATGCAGTACTTTGTGACCATGTTGTTCCTGTGTAATGcagtatgttgttaccattatgtttctgtgtaatacagtatgttgttaccattatgtttctgtgtaatacagtatgttaccattatatttctgtgtaatacagtatgttaccattaTATTTTtgtgtaatacagtatgttaccattaTATTTCTGAGGAATACAGTACTTTGCTACCGTGTTGTTTCTGTGTAATGCAGTactttgttaccatgttgtttctgtgtaatgcagtactttgttaccatgttgttcctGTGAAATGCAGTACTTTGTTACCATGTTTTTTCTGTGTAATGCAGTactttgttaccatgttgtttctgtgtaatgcagtactttgttaccatgttgtttctgtgtaatgcagtactttgttaccatgttgttcctGTGTAATGCAGTACTTTGTGACCATGTTGTTCCTGTGTAATGCAGTactttgttaccatgttgtttctgTGTAATGCAGTATGTTATCATTATGTTTCTGTGTAATACATTATGTTGTTACCATTATATGtctgtgtaatacagtatgttaccatcaTATTTCTGTGTAATACAATATGTTG
>TU244596
tacagtatgttaccttTATTTTTCTGAGGAATACAGTactttgctaccatgttgtttctgTGTAATGCAGTACTTTGTGaccatgttgttcctGTGAAATGCAGTACTTTGTTACCATGTTTTTTCTGTGTAATGCAGTactttgttaccatgttgtttctgtgtaatgcagtactttgttaccatgttgtttctgtgtaatgcagtactttgttaccatgttgttcctGTGTAATGCAGTACTTTGTGACCATGTTGTTCCTGTGTAATGCAGTactttgttaccatgttgtttctgTGTAATGCAGTATGTTATCATTATGTTTCTGTGTAATACATTATGTTGTTACCATTATATGtctgtgtaatacagtatgttaccatcaTATTTCTGTGTAATACAATATGTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU244592 False 557 lncRNA 0.32 2 497860 501722
TU244593 False 1023 lncRNA 0.47 2 498461 501722
TU244596 True 411 lncRNA 0.34 2 499871 501722

Neighbor

gene id symbol gene type direction distance location
LOC118964344 NA coding upstream 281457 213740 ~ 216403 (+)
LOC118964343 NA coding upstream 301344 195431 ~ 196516 (+)
irx1a LOC106593994 coding downstream 438841 940563 ~ 944831 (+)
LOC118944464 NA coding downstream 623595 1125317 ~ 1130309 (+)
LOC118944732 NA coding downstream 805285 1307007 ~ 1309337 (+)
LOC118944733 plekha8 coding downstream 1034157 1535879 ~ 1538143 (+)
LOC118964346 LOC106597212 coding downstream 1043535 1545257 ~ 1567659 (+)
G214990 NA non-coding upstream 2637 492028 ~ 495223 (+)
G214988 NA non-coding upstream 8674 488682 ~ 489186 (+)
G214987 NA non-coding upstream 9741 487471 ~ 488119 (+)
G214986 NA non-coding upstream 10610 486866 ~ 487250 (+)
G214985 NA non-coding upstream 12123 485407 ~ 485737 (+)
G215009 NA non-coding downstream 8494 510216 ~ 510481 (+)
G215045 NA non-coding downstream 46861 548583 ~ 549057 (+)
G215046 NA non-coding downstream 49997 551719 ~ 551920 (+)
G215047 NA non-coding downstream 51115 552837 ~ 553218 (+)
G215073 NA non-coding downstream 83808 585530 ~ 586141 (+)
G215012 NA other downstream 14638 516360 ~ 518187 (+)
G215455 NA other downstream 582720 1084442 ~ 1086530 (+)
G215792 NA other downstream 1021547 1489352 ~ 1577030 (+)
G215820 LOC100136727 other downstream 1107916 1609638 ~ 1616379 (+)
LOC118944469 LOC100136727 other downstream 1133876 1635598 ~ 1680107 (+)

Expression


Co-expression Network