G215227


Basic Information

Item Value
gene id G215227
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 772960 ~ 773936 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU244919
tctctctctctctctctctctctctctctgtctcactctctctgtctctctctctgtctctctctctctgtctctctctctctgtctctctctctgtctctcctcgtctctctctctgtctctctctctctgtctctctctctgtctctctgtctctctctgtctctctctctctctctctctgtctcactctctctgtctctcctcgtctctctctctcaattcaattcaattcaattcaagggctttattggcatgggaaacatgtgttaacattgccaaagcaagtgaggtagataatatataaagtgaatattctctctctctctgtctctctctctgtctctctctctctctccctcctcgtctctctctctctctctctctgtctctctctctctgtctctctctctctctcctcgtctctctctctctctctttctctctctctctcctcgtctctctctctctctcctcatctctctctctctctctccttgtctctctctctctctctctctctctctcctcgcctctctctctctctctctctctctgtccctctctctctctcctcgtctctctctctctgtctctctctctgtctctctctctttctctctcctcgtctctctctctctctctctctctctctctctctctctctctctctctgctccctccttctctactgtGTGATGATAGACACTGTCAGTATTCCTCCTTGTTAAGAGCGGTTGTGTTTGTCCACCAGGTAATGATCCATAGCCAGCAGACATCCAGCCCCACAGGGAGAGAAGTGCTCACTCAACTCTGTCATTTCATTTCTACTGTCAAATCCATTACGTTCGAACACTGGTTCTTCATGCATGTATTTGTCTCATTTTGGATAGATTCTCTGTGACTTTTAAAGCCAAGCAGCACTTCTCAGATCAGAGTGTCTCCCTCTCAgccccctgtctctgtgtgaccTGATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU244919 True 977 lncRNA 0.48 1 772960 773936

Neighbor

gene id symbol gene type direction distance location
LOC118964344 NA coding upstream 556557 213740 ~ 216403 (+)
LOC118964343 NA coding upstream 576444 195431 ~ 196516 (+)
irx1a LOC106593994 coding downstream 166627 940563 ~ 944831 (+)
LOC118944464 NA coding downstream 351381 1125317 ~ 1130309 (+)
LOC118944732 NA coding downstream 533071 1307007 ~ 1309337 (+)
LOC118944733 plekha8 coding downstream 761943 1535879 ~ 1538143 (+)
LOC118964346 LOC106597212 coding downstream 771321 1545257 ~ 1567659 (+)
G215204 NA non-coding upstream 25334 745715 ~ 747626 (+)
G215198 NA non-coding upstream 37465 735261 ~ 735495 (+)
G215182 NA non-coding upstream 49016 719473 ~ 723944 (+)
G215179 NA non-coding upstream 55358 715607 ~ 717602 (+)
G215118 NA non-coding upstream 119122 653414 ~ 653838 (+)
G215229 NA non-coding downstream 291 774227 ~ 774514 (+)
G215232 NA non-coding downstream 2489 776425 ~ 776632 (+)
G215244 NA non-coding downstream 11603 785539 ~ 785925 (+)
G215248 NA non-coding downstream 15317 789253 ~ 806714 (+)
G215252 NA non-coding downstream 46608 820544 ~ 820753 (+)
G215012 NA other upstream 254773 516360 ~ 518187 (+)
G215455 NA other downstream 310506 1084442 ~ 1086530 (+)
G215792 NA other downstream 749333 1489352 ~ 1577030 (+)
G215820 LOC100136727 other downstream 835702 1609638 ~ 1616379 (+)
LOC118944469 LOC100136727 other downstream 861662 1635598 ~ 1680107 (+)
G215830 NA other downstream 896475 1670411 ~ 1747282 (+)

Expression


Co-expression Network