G215384


Basic Information

Item Value
gene id G215384
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 937063 ~ 995851 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU245129
CAGCTCCTTTTGAAGTGGCTGTTCTACATTAAACTGCGAGTCACTGTGGTATTGAAAGGCTGTGATTGTTAGCAGTTCCTACTCTACTCTGATCACCGTGGTATCGAAAGGCTGTTGTTGATAGCAGTTCCTACTCTACTCTGATCACCATGGTATCAAAAAGCTGTTGTTGATAGCAGTTCCTACTCTACTCTGATCACCATGGTATCAAAAAGCTGTTGTTGATAGCAGTTCCTACTCTACTCTGATCACCATGGTATCAAAAAGCTGTTGTTGATAGCAGTTCCTACTCTACTCTGATCACCATGGTATTCAGAGTAG
>TU245128
CAGCTCCTTTTGAAGTGGCTGTTCTACATTAAACTGCGAGTCACTGTGGTATTGAAAGGCTGTGATTGTTAACAGTTCCTACTCTACTCTGATCACCATGGTATCAAAAAGCTGTTGTTGATAGCAGTTCCTACTCTACTCTGATCACCATGGTATCAAAAAGCTGTTGTTGATAGCAGTTCCTACTCTACTCTGATCACCATGGTATCAAAAAGCTGTTGTTGATAGCAGTTCCTACTCTACTCTGATCACCATGGTATCAAAAAGCTGTTGTTGATAGCAGTTCCTACTCTACTCTGATCACCATGGTGTGTTTTTTACAATCTTAttctactgcttgcgtcagttacctgagttccatgtagtcatggctctatgtagtactgtggaatagagtaccatgtagtcatggctctatgtagtactgtggaatagagttccatgtagtcatggctctatgtagtactgtggaatagagttccatgtagtcagggctctatgtagtactgtggaatagagtaccatgtagtcatggctctatgtagcactgtggaatagagttccatgtaggcaTGGCTCTATGTACtactgtggaatagaggtccatgtagtcatggctctatgtagtactgtggaatagagttccatgtagtcatggctctatgtagtactgtggaatagaggtccatgtagtcatggctctatgtagcactgtggaatagaggtccatgtagtcatggctctatgtactactgtggaatagaggtccatgtagtcatggctctatgtactactgtggaatagaggtccatgtagtcatggctctatgtagtactgtggaatagagttccatgtagtcatggctctatgtagtactgtggaatagaggtccatgtagtcatggctctatgtagtactgtggaatagagttccgtgtagtcatggctctatgtagtactgtggaatagaggtccatgtagtcatggctctatgtagtaccgtggaatagagttccatgtagtcatggctctatgtagtaccgtggaatagagttccatgtagtcatgtctctatgtagtactgtggaatagaggtccctgtagtcatggctctatgtagtactgtggaatagagttccatgtagtcatggctctatgtagtactgtggaatagagttccatgtagtcatggctctatgtagtaccgtggaatagagttccatgtagtcatgtctctatgtagtactgtggaatagaggtccatgtagtcatggctctatgtagtactgtggaatagagttccatgtagtcatgtctctatgtagtactgtggaatagagttccatgtagtcatgtctctatgtagtactgtggaatagagttccatgtagtcatgtctctatgtagtaccgtggaatagagttccatgtagtcatggctctatgttgtac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU245129 False 321 lncRNA 0.42 3 937063 995851
TU245128 True 1450 lncRNA 0.43 4 993940 995851

Neighbor

gene id symbol gene type direction distance location
LOC118964345 NA coding downstream 56032 879000 ~ 881031 (-)
irx2a irx2 coding downstream 421854 510967 ~ 515209 (-)
LOC118944729 NA coding downstream 686515 247153 ~ 252277 (-)
irx4a LOC105016487 coding downstream 781492 147740 ~ 155571 (-)
LOC118964342 NA coding downstream 862510 63916 ~ 74553 (-)
LOC118936608 hacl1 coding upstream 575826 1571677 ~ 1581702 (-)
LOC118944736 NA coding upstream 578513 1574364 ~ 1575575 (-)
LOC118944735 LOC106595845 coding upstream 587265 1583116 ~ 1593615 (-)
LOC118944737 NA coding upstream 611190 1607041 ~ 1609598 (-)
LOC110519742 LOC106595845 coding upstream 665809 1661660 ~ 1673583 (-)
G215364 NA non-coding downstream 511 936167 ~ 936552 (-)
G215316 NA non-coding downstream 47605 887397 ~ 889458 (-)
G215297 NA non-coding downstream 75435 861312 ~ 861628 (-)
G215265 NA non-coding downstream 107095 829254 ~ 829968 (-)
G215263 NA non-coding downstream 108515 828145 ~ 828548 (-)
G215418 NA non-coding upstream 2606 998457 ~ 1006363 (-)
G215426 NA non-coding upstream 23207 1019058 ~ 1019329 (-)
G215429 NA non-coding upstream 24720 1020571 ~ 1021384 (-)
G215431 NA non-coding upstream 30155 1026006 ~ 1027291 (-)
G215608 NA non-coding upstream 56424 1052275 ~ 1053216 (-)
G215354 NA other downstream 17390 915959 ~ 919673 (-)
G214982 NA other downstream 455454 481047 ~ 481609 (-)
G214663 NA other downstream 757472 177723 ~ 179591 (-)
G215950 NA other upstream 604375 1600226 ~ 1618140 (-)
G215956 NA other upstream 663229 1659080 ~ 1682022 (-)
LOC110516567 LOC106595628 other upstream 930893 1916571 ~ 1953363 (-)
G216038 NA other upstream 1062064 2057915 ~ 2058429 (-)

Expression


Co-expression Network