G215555


Basic Information

Item Value
gene id G215555
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 1359382 ~ 1361280 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU245376
GGTCAACAACATGTGGATCCAACAGGGTATTTACTGATAGAGTGGAAGGGTCGACAACATGTGGATCCAACAGGGTATTTTCTGATAGAGTGGAAGGTGGAAGGGTCAACAACATGTGGATCCAACAGGGTATTTACTGATAGAGTGGAAGGGTCAACAACATGTGGATCCAACAGGGTATTTACTGATAGAGTGGAAGGGTCAACAACATGTGGATCCAACAGGGTATTTACTGATAGAGTGGAAGGGTCAACAACATGTGGATCCAACAGGGATAGTTGTTGGAACACAATACAACAAGGAATTGACTTTGTGTCAACAGTATTTCCTTTGAGAACACAGGGGTGCGCTGGGAACGTGGTTCAGGGCTGCTGTGTTGAGTAGATACTGTAGATTACATGCAGGTTTGCTTCTGTATGatatctcaaacacacacacacacacacacacacacacaacaaattaTATGTTGTTGCCGTTTCTCTGAAAGCTTTTCAATGTCAAGAGAGACCACTAGTAatttaaattaatcaaaatggcGCGTAACAAAAATAACTGTGGGTTTGACACACTCTTTGAAAAGAATAGCAATCAGAGGATGTAATGCATTTCTGCTGTATGTTTAAAGCTGTGACACTGGGCCACAGATGTACATGTGTTGACTTTCTATTGTGGAGAGATCTGTCTGGTGATAACCTATTACAAGACATCCCTCCCCCATCGCCCTGCAGACCACCGCACCTCCCAGGAACAATTCCATCACATGCTCAAATCCACAGATG

Function

NR:

description
PREDICTED: uncharacterized protein LOC109111517 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU245376 True 782 lncRNA 0.48 4 1359382 1361280

Neighbor

gene id symbol gene type direction distance location
LOC118944732 NA coding upstream 50045 1307007 ~ 1309337 (+)
LOC118944464 NA coding upstream 230610 1125317 ~ 1130309 (+)
irx1a LOC106593994 coding upstream 414551 940563 ~ 944831 (+)
LOC118964344 NA coding upstream 1142979 213740 ~ 216403 (+)
LOC118964343 NA coding upstream 1162866 195431 ~ 196516 (+)
LOC118944733 plekha8 coding downstream 174599 1535879 ~ 1538143 (+)
LOC118964346 LOC106597212 coding downstream 183977 1545257 ~ 1567659 (+)
LOC118944738 LOC100136727 coding downstream 248424 1609704 ~ 1611504 (+)
LOC118944466 LOC100136727 coding downstream 254266 1615546 ~ 1618046 (+)
LOC118964347 LOC100136727 coding downstream 260877 1622157 ~ 1626290 (+)
G215544 NA non-coding upstream 48320 1310354 ~ 1311062 (+)
G215531 NA non-coding upstream 72862 1285796 ~ 1286520 (+)
G215528 NA non-coding upstream 94068 1264547 ~ 1265314 (+)
G215491 NA non-coding upstream 203497 1154378 ~ 1155885 (+)
G215560 NA non-coding downstream 14634 1375914 ~ 1405461 (+)
G215575 NA non-coding downstream 47251 1408531 ~ 1418926 (+)
G215582 NA non-coding downstream 66916 1428196 ~ 1431723 (+)
G215591 NA non-coding downstream 83041 1444321 ~ 1448803 (+)
G215777 NA non-coding downstream 116838 1478118 ~ 1480022 (+)
G215455 NA other upstream 272852 1084442 ~ 1086530 (+)
G215012 NA other upstream 841195 516360 ~ 518187 (+)
G215792 NA other downstream 161989 1489352 ~ 1577030 (+)
G215820 LOC100136727 other downstream 248358 1609638 ~ 1616379 (+)
LOC118944469 LOC100136727 other downstream 274318 1635598 ~ 1680107 (+)
G215830 NA other downstream 309131 1670411 ~ 1747282 (+)
G215843 LOC100136727 other downstream 443108 1804388 ~ 1805255 (+)

Expression


Co-expression Network