XLOC_021763


Basic Information

Item Value
gene id XLOC_021763
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 29396181 ~ 29402096 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044846
CTCTGTCTAATGCACtggttgtaattttatttttttacctcatTCACTAAACAGGTCAATGGTGCAAGATTACCATACACAGAATTAAGATATATGCATTACACGTCTAGGCTATACAGCGAATGGattataattattacaaatacaggagacatatttacattttaatccaAGTTCCATACAAcatgaaatatttacaaaataagtatGAAAATGAAGCCAATCTGACAAATAATGTACAGTGTTAATGCCACAGCTAAACTGTTTCTGTCGTTTCATCACAATGAGAGGGAACGATGTTCATCTGGAAACGTGAGGTGATACAGTAATGCCAGGGTTGCTTCAAAGGCagcatgggagaaaaaaatgcatgagtgagcggaaaaaaagaaagagagaaatgaCCGTGCCAGTAAAACAATGCTATATTTTTAGAAAACATATTCCCTGATGTTAGAAATTAAAACGCACAAGCCTCATCGCAACTCTAGactaaatgtggaaaaagtgccCATGTAACATCATCCATTTCCTATTTCAAGAAATAAGAAGCACAGCAACATGTCAGTCCCTATATTTGTCATATCTCATCAGATAATTCATGCATTTAGTGGAACTCAAAATACATTCAAAGTCCATTTCCATAAACACCACACTCCATTTGGTTTCCATtccagaaaacaaaaaacataattcaAGCTTTATTTGTTCTGTTGTTAGTTTGTATAAACGCATATTATGTGCAAAGAGCTGCAAACTAATATATACAttgcaaaacaataaatacagTTAATGGAAATTCATTATGAATGTCACATTAGTCAGTGAAGCCACTCAACAaagattgttaaaaatatatcagAAAACCTTTGCTCTGGCCAAAAAAGTAACATTAACTCATAAAATTAGATAAACGCTAACCTTCATTAACTCTCCATGCTCCTTATGTGCCAAATCAGAACATTTTCACAGATTTCTTAACAATCCAACAGCTCCGATGAGGCCTGCAGGCTGGCTGACCCGAGGACTTTCAGAGATTCAGAGTCGTTTTCATGCGTTTCCTGTGAAAATGCACTAAAGCGAGCTTATTGACTTCATATCAGTGATCAGCACTTCTGTAGCAGTCATCAGTTCCTGCTGGTTGTCTGGCCAGAGGAATGTTGTTTGCCGAAAATCAAACTGGATCACTGCTAACTTCAGCACTTACATCTAAACTGCATGTGTTCAAACATACAAGGTAAAGATCTTCAAAAGAAACACTGAAGAGTTCTTCAgcctctaagtgccgtctgaaatttccatcgaaaatCAACATTTTTCCAGCTTCCTTTGTTTGTGATGtcctttaaagaccaggaaacggacttattctttgccataaacgtgatattactgaacacacacaggagcctgaaaaaatgcttattttaaaggaCAATTTCAGACAGCATTTAAAGGTTTTTTCATCTAGTCAACTATTAAAATTAGACAACATACCATCCCTTTTCCCTCACTGCGCCGCAGTGAACTGCACAAGTGGCCCAGTTTACATCCACTGACAGTGATGAAACGCTTTTAGTGGTCCGAGTAAATAAATAAGACTATAAATGAGGAAAAAGTGCCCTTCTTGTCTTCGTTTGTATAATGTAAAACACTGATCGcttgttaataaaaataagttaagaGATATGTGGTAAATGCGCACTCATATTTAAAAGTCCTACTCTTCTTCAAAAAGGCTGGTTTAATGATCCTGCTGATCGGAAATTCCTCTGCAAATGTGAATATCTGCGTAACCGTAACCAATCAAATCAGCATCTCACTTCAGATGAGACGAACAGCCCGCCAAAAATGGCATTCCAGTAATACAGTAAGGACAGAAACTCATGAAGAGCGATAAGCGCAGTAATCCTGAAGGTTATGTACAAATGGGATTCATTCGGTCAGTTGTTCTGTGTGTCTAAGGTAATTCTTTTGCACCATTTTATTTTCTTAAGCTAATCTACTGAGGAAATCGAGCAGAATATTCCTGTAGGCTACTGAAAGAGTGATATGAGAGCTCATGGTCATCTTTCCTTCATGTACATCATGATTAGATACTGCACTTTGCTAAATGGCGTGTTTTACGTCCTTCATATGTGGAATTTATGTCAAGCAAATACACTGCATCAGGCTGGGCCAATGGGCTGTATGTACACGGTCAACATACCCACTATCATTGCTAGCTTTGATTTAGCAAATCCAATACTGCGAGAACATTCAGTTTAATAGTCAATTTCAGCCTCTTTTAGAAAATTAAGCATCTCGAAGAAGTGCTTTGGTCCATCTGAAAATTCAATTTTTTTCTGCGCTATTTGGAGCAACGCTATTTGTGAGAGaaagttgatttttttaaacctttaaatgtggaatatttgatatattattatactattcttatttattttcttcaacCTTAATGCCATAGGGGTTTATAGCAAACTGACTTTCTCCTGAGGGTTGTGGGTAAGATGTTCCTGGCagacaacactgtaaaaatgaactGAAGAGAAGCAGAACCTGCTCTGAAGATTcgtgcacacacaaacagactatTACAACATGCAACTCGAAGGAGGTTCAGTTATGACAAAGAACGAAAACTGAAGACAGAATAAATCCGATCAATAATAACACAATAgagagggaggaggaggaggagaagaggaaCTGAAAGTTCATTTGCTGGAGAGGAGAACAGAGCCACAGGTCTACATACAAGAGAAACCGTCAAGAAGCACAAAGATTTAGAAGTGTTAACACACTTGGTACGCTGTAAAGgtagacagagagaaaaagagcactatctctgcatgtgtgtgtgtgtgtgatcactcAGTTCTTCATCACACCAGACCGTCTCCTTGCAAGCTTCGACCTGCAGGAGAACATAGAGAGTCAGAAGGACAGCgcacaacaacatcaacaaaaaacatttacaaagaaGTGAATGTGACTGCTGATGGACTTTAGTCAAGGAGGGTCCTTGTCATTGTTGTAGATGAACACATA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044846 True 3051 lncRNA 0.38 2 29396181 29402096

Neighbor

gene id symbol gene type direction distance location
XLOC_021762 tardbpl coding upstream 33336 29357790 ~ 29362845 (+)
XLOC_021761 NA coding upstream 435872 28944314 ~ 28960309 (+)
XLOC_021760 CR677513.2 coding upstream 470141 28925923 ~ 28926040 (+)
XLOC_021757 pex14 coding upstream 470424 28809002 ~ 28925757 (+)
XLOC_021764 lzic coding downstream 167797 29569893 ~ 29575691 (+)
XLOC_021765 NA coding downstream 178447 29580543 ~ 29583279 (+)
XLOC_021766 BX571850.1 coding downstream 186348 29588444 ~ 29588558 (+)
XLOC_021767 NA coding downstream 438763 29840859 ~ 29846879 (+)
XLOC_021768 aurkaip1 coding downstream 481120 29883216 ~ 29888793 (+)
XLOC_021759 CR677513.1 non-coding upstream 492725 28903330 ~ 28903456 (+)
XLOC_021758 NA non-coding upstream 500101 28895775 ~ 28896080 (+)
XLOC_021756 CR381533.2 non-coding upstream 595962 28800103 ~ 28800219 (+)
XLOC_021774 NA non-coding downstream 1000218 30402314 ~ 30433385 (+)
XLOC_021777 AL845357.1 non-coding downstream 1362191 30764287 ~ 30772886 (+)

Expression


Co-expression Network