G215582


Basic Information

Item Value
gene id G215582
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 1428196 ~ 1431723 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU245412
atataaaaaaaggcaCTTTGTTTCCTATAGGGCAAAAACAGCTAATTACAAATGGAATCAAATGGAAAatgtaaatgaatgaatgaaactgAGTAAATACCTGTGGTTACATTACAAAGGGGACTGTCAGCATAAATATTAGACCTCTGAGAGGGATCATTTAACCTGTGAACCACAAGGTTAATGCTGTAGGAGCTGGACGACCAACAGCATGGAAATGATTTATGTGGGAGAATCCATCTTCATCATCTGAGCCTCACCTTcatctccatcattcttaattaaAGGAAGGTCAGTGTCTCCCCACTCATCATTCCACCTCCTCCTCGTCCCTCCCCCACTTATTTACATAACAAATCACATACATGCACTAAGGGAGTTTGCTGACACAAACAGACTGAAACTACCAAACTACGCTCAGACAAAGACTGAACCTAATTACTGATCTACTACGGTCATACCAAGACTGAACCTAATTACTGAACGGTCATACCAAGACTGAACCTAATTACTGATCTACTACGGTCATACCAAGACTGAACCTAATTACTGATCTACTACGGTCATACCAAGACTGAACCTAATTACTGAACGGTCATACCAAGACTGAACCTAATTACTGATCTACTACGGTCATACCAAGACTGAACCTAATTACTGATCTACTACGGTCATACCAAGACTGAACCTAATTACTGATCTACTACGGTCATACCAAGACTGAACCTAATTACTGATCTACTATGGTCATACCAAGACTGAACCTAATTACTGAACGGTCATACCAAGACTGAACCTAATTACTGATCTACTACGGTCATACCAAGACTGAACCTAATTACTGAACGGTGATACCAAGACTGAACCTAATTACTGATCTACTACGGTCATACCAATACTGAACCTAATTACTGATCTACTACGGTCATACCAAGACTGAACCTAATTACTGATCTACTACGGTCATACCAAGACTGAACCTAATTACTGAACGGTCATACCAAGACTGAACCAAATTACTGATCTACTATGGTCATACCAAGACTGAACCTAATTACTGATCTACTACGGTCATACCAAGACTGAACCTAATTACTGATCTACTACGGTGATACCAAGACTGAACCTAATTACTGATCTACTACGGTCATACCAAGACTGAACCTAATTACTGATCTACTATGGTCATACCAAGACTGAACCTAATTACTGATCTACTACGGTGATACCAAGACTGAACCAAATTACTGATCTACTACGGTCATACCAAGACTGAACCTAATTACTGATCTACTACGGTCATACCAAGACTGAACCTAATTACTGATCTACTACGGTCATACCAAGACTGAACCTAATTACTGATCTACTACGGTGACACCAAGACTGAACCTAATTACTGAAGGGTCACACCAAGACTGAACCTAATTACTGAAGGCTTCACGGTTAATATAATAACCTTTGTTTAATGTACCTGCAGTGTTTTGTGTTTAAACCATGCAAAATGTTGTTAAACGGGGACCGGCGTTCTAAACTAGTTTGGTTTTACTCATATCTATTCTACATCACTTCCCAATACAAATCCAGATAACACACGTATCTGTGTTGTGTTATCAGAAGGTACCATGTGCTGTCTGTCCCTCTGGTCTCAGTCATCAGCCACTTGATGTGATTCAACCAGTCCTTAGTTGTCAAAAAGCAGAACAGCTCAATAGCATCTATATGCACTGAGCACTCTGGACAATGAGACCACACAGGCTGTTGCTTTGGCAATGAATTTCAATTTCACTAATTGTCTAGAAGTCATTATTAAGTGAATCTCTCAGAGGAGAGAACAAGTCCCAGGGATAAAGGAGATAAAGGAGAACACGACGGGGAGCCGGATTCTGACTGACAATATCCTGCAAGACTCTGAATACATTAACTACTGTTGTTGTGCATCTTGTTGTCTTATCTCTCTTATCATTAACTACTGTTGTCTTATATCTCTTACCATTAACTACTGTTGTCTTATCTCTCATATCATTAACTACTGTTGTCTTATCTCTCTTATCATTAACTACCGTTGTCTTATCTCTCTTATCATGAACTACTGTTGTCTTATCTCTCATATCATTAACTACTGTTGTCTTATCTCTCTTATCATTAACTACTGTTGTCTTATCTCTCATATCATTAACTACTGTTGTCTTATCTCTCATATCATTAACTACTGTTGTCTTATCTCTCTTATCATTAACTACTGT

Function

NR:

description
PREDICTED: salivary glue protein Sgs-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU245412 True 2246 lncRNA 0.39 3 1428196 1431723

Neighbor

gene id symbol gene type direction distance location
LOC118944732 NA coding upstream 118859 1307007 ~ 1309337 (+)
LOC118944464 NA coding upstream 299424 1125317 ~ 1130309 (+)
irx1a LOC106593994 coding upstream 483365 940563 ~ 944831 (+)
LOC118964344 NA coding upstream 1211793 213740 ~ 216403 (+)
LOC118964343 NA coding upstream 1231680 195431 ~ 196516 (+)
LOC118944733 plekha8 coding downstream 104156 1535879 ~ 1538143 (+)
LOC118964346 LOC106597212 coding downstream 113534 1545257 ~ 1567659 (+)
LOC118944738 LOC100136727 coding downstream 177981 1609704 ~ 1611504 (+)
LOC118944466 LOC100136727 coding downstream 183823 1615546 ~ 1618046 (+)
LOC118964347 LOC100136727 coding downstream 190434 1622157 ~ 1626290 (+)
G215575 NA non-coding upstream 9270 1408531 ~ 1418926 (+)
G215560 NA non-coding upstream 22735 1375914 ~ 1405461 (+)
G215555 NA non-coding upstream 66916 1359382 ~ 1361280 (+)
G215544 NA non-coding upstream 117134 1310354 ~ 1311062 (+)
G215531 NA non-coding upstream 141676 1285796 ~ 1286520 (+)
G215591 NA non-coding downstream 12598 1444321 ~ 1448803 (+)
G215777 NA non-coding downstream 46395 1478118 ~ 1480022 (+)
G215778 NA non-coding downstream 48347 1480070 ~ 1480308 (+)
G215782 NA non-coding downstream 50286 1482009 ~ 1483294 (+)
G215792 NA non-coding downstream 57629 1489352 ~ 1577030 (+)
G215455 NA other upstream 341666 1084442 ~ 1086530 (+)
G215012 NA other upstream 910009 516360 ~ 518187 (+)
G215820 LOC100136727 other downstream 177915 1609638 ~ 1616379 (+)
LOC118944469 LOC100136727 other downstream 203875 1635598 ~ 1680107 (+)
G215830 NA other downstream 238688 1670411 ~ 1747282 (+)
G215843 LOC100136727 other downstream 372665 1804388 ~ 1805255 (+)

Expression


Co-expression Network