Gene
RNA
| Item | Value |
|---|---|
| gene id | G215806 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048567.1 |
| NCBI id | CM023221.2 |
| chromosome length | 85311031 |
| location | 1523294 ~ 1533926 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: tyrosine-protein phosphatase non-receptor type 13-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU245720 | False | 222 | lncRNA | 0.55 | 3 | 1523294 | 1533926 |
| TU245721 | True | 301 | lncRNA | 0.54 | 2 | 1532900 | 1533926 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118964345 | NA | coding | downstream | 642263 | 879000 ~ 881031 (-) |
| irx2a | irx2 | coding | downstream | 1008085 | 510967 ~ 515209 (-) |
| LOC118944729 | NA | coding | downstream | 1272746 | 247153 ~ 252277 (-) |
| irx4a | LOC105016487 | coding | downstream | 1367723 | 147740 ~ 155571 (-) |
| LOC118964342 | NA | coding | downstream | 1448741 | 63916 ~ 74553 (-) |
| LOC118936608 | hacl1 | coding | upstream | 37751 | 1571677 ~ 1581702 (-) |
| LOC118944736 | NA | coding | upstream | 40438 | 1574364 ~ 1575575 (-) |
| LOC118944735 | LOC106595845 | coding | upstream | 49190 | 1583116 ~ 1593615 (-) |
| LOC118944737 | NA | coding | upstream | 73115 | 1607041 ~ 1609598 (-) |
| LOC110519742 | LOC106595845 | coding | upstream | 127734 | 1661660 ~ 1673583 (-) |
| G215804 | NA | non-coding | downstream | 5089 | 1491111 ~ 1518205 (-) |
| G215805 | NA | non-coding | downstream | 28731 | 1491957 ~ 1494563 (-) |
| G215790 | NA | non-coding | downstream | 34508 | 1488532 ~ 1488786 (-) |
| G215789 | NA | non-coding | downstream | 36305 | 1486756 ~ 1486989 (-) |
| G215785 | NA | non-coding | downstream | 38523 | 1484280 ~ 1484771 (-) |
| G215813 | NA | non-coding | upstream | 48054 | 1581980 ~ 1582274 (-) |
| G215946 | NA | non-coding | upstream | 61392 | 1595318 ~ 1676448 (-) |
| G215951 | LOC100136727 | non-coding | upstream | 96855 | 1630781 ~ 1642993 (-) |
| G215954 | NA | non-coding | upstream | 111228 | 1645154 ~ 1719959 (-) |
| G215354 | NA | other | downstream | 603621 | 915959 ~ 919673 (-) |
| G214982 | NA | other | downstream | 1041685 | 481047 ~ 481609 (-) |
| G214663 | NA | other | downstream | 1343703 | 177723 ~ 179591 (-) |
| G215950 | NA | other | upstream | 66300 | 1600226 ~ 1618140 (-) |
| G215956 | NA | other | upstream | 125154 | 1659080 ~ 1682022 (-) |
| LOC110516567 | LOC106595628 | other | upstream | 392818 | 1916571 ~ 1953363 (-) |
| G216038 | NA | other | upstream | 523989 | 2057915 ~ 2058429 (-) |
