Gene
RNA
| Item | Value |
|---|---|
| gene id | G215813 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048567.1 |
| NCBI id | CM023221.2 |
| chromosome length | 85311031 |
| location | 1581980 ~ 1582274 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| RNA-directed DNA polymerase from mobile element jockey |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU245732 | True | 295 | lncRNA | 0.39 | 1 | 1581980 | 1582274 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118936608 | hacl1 | coding | downstream | 278 | 1571677 ~ 1581702 (-) |
| LOC118944736 | NA | coding | downstream | 6405 | 1574364 ~ 1575575 (-) |
| LOC118964345 | NA | coding | downstream | 700949 | 879000 ~ 881031 (-) |
| irx2a | irx2 | coding | downstream | 1066771 | 510967 ~ 515209 (-) |
| LOC118944729 | NA | coding | downstream | 1331432 | 247153 ~ 252277 (-) |
| LOC118944735 | LOC106595845 | coding | upstream | 842 | 1583116 ~ 1593615 (-) |
| LOC118944737 | NA | coding | upstream | 24767 | 1607041 ~ 1609598 (-) |
| LOC110519742 | LOC106595845 | coding | upstream | 79386 | 1661660 ~ 1673583 (-) |
| LOC118944740 | LOC106595845 | coding | upstream | 157687 | 1739961 ~ 1750262 (-) |
| LOC118944751 | LOC106595628 | coding | upstream | 168145 | 1750419 ~ 1755795 (-) |
| G215806 | NA | non-coding | downstream | 48054 | 1523294 ~ 1533926 (-) |
| G215807 | NA | non-coding | downstream | 50990 | 1521400 ~ 1530990 (-) |
| G215804 | NA | non-coding | downstream | 63775 | 1491111 ~ 1518205 (-) |
| G215805 | NA | non-coding | downstream | 87417 | 1491957 ~ 1494563 (-) |
| G215946 | NA | non-coding | upstream | 13044 | 1595318 ~ 1676448 (-) |
| G215951 | LOC100136727 | non-coding | upstream | 48507 | 1630781 ~ 1642993 (-) |
| G215954 | NA | non-coding | upstream | 62880 | 1645154 ~ 1719959 (-) |
| G215963 | LOC100136727 | non-coding | upstream | 108132 | 1690406 ~ 1716788 (-) |
| G215354 | NA | other | downstream | 662307 | 915959 ~ 919673 (-) |
| G214982 | NA | other | downstream | 1100371 | 481047 ~ 481609 (-) |
| G214663 | NA | other | downstream | 1402389 | 177723 ~ 179591 (-) |
| LOC118964342 | NA | other | downstream | 1507429 | 63916 ~ 74553 (-) |
| G215950 | NA | other | upstream | 17952 | 1600226 ~ 1618140 (-) |
| G215956 | NA | other | upstream | 76806 | 1659080 ~ 1682022 (-) |
| LOC110516567 | LOC106595628 | other | upstream | 344470 | 1916571 ~ 1953363 (-) |
| G216038 | NA | other | upstream | 475641 | 2057915 ~ 2058429 (-) |
