G215954


Basic Information

Item Value
gene id G215954
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 1645154 ~ 1719959 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU245909
gtactgtctttccaagctagtcggaagacttccagtttggtgtggcgccatttccgttccaattttctggaagcttgcttcagagctcgggtattttctgtataccagggagctagtttcttatgagaaatgtttttagtttttaggggtgcaactgcatctagggtattgcgcaaggttaaattgagttcctcagttaggtggttaactgatttttgtcctctggcgtccttgggtagacagagggagtctggaaggacatcaaggaatctttgtgttgtctgtgaatttatagcacgacttttgatgttccttggttggggtctgagcagattatttgttgcaattgcaaacgtaataaaatggtggtccgatagtccaggattatgagggaaaacattaagatccacaacatttattccatgggacaaaactaggtccagagtatgactgtgacagtgagtaggtccagagacatgttggacaaaacccactgagtcgatgatggctccgaaagcctttttcGAGTgggaatattatctgctatgactacatggtccgataggaattcagggaactgtatatggcccaggaggcctgtaaacagtagctaaaaaaaatgattgagtaggctacatagatttcatgactagaagctcaaaagacgaaaacgtcttttttttttgtaaatgtacatttgctatcgtaaatgttagcaacagcTCCgcaggatgcacgggggatatggtcactagtgtagccaggaggtgaggcctcatttaacacagtaaattcatcaggctaaagacatgtttcagtcaggccaatcacatcaagattatgatcagttcattgactataattgcctttgaagtaagggatctgacattaagtagccctattttgagatgtgaggtatcatgatctctttcaataatgacaggaatggaggaggtctttatcttagtgagattgctaaggcgaacaccgccatgtttaattttgcccaacctaggtcgaggcacagacacggtctcaatggagatagctgagctgactacactgactgtgctagtggcagactggCTAACAGCCttgcctgcaccctatttcattgtggagctagaggagttagagccctgtctatgttagtagataagatgagagcacccctccagctaggatgaaGTCCGTCACTCCTccgcaggtcaggcttggtcctgtttgtgggtgagtcccagaa

Function

NR:

description
ORF2 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU245909 True 1243 lncRNA 0.44 2 1645154 1719959

Neighbor

gene id symbol gene type direction distance location
LOC118944737 NA coding downstream 35556 1607041 ~ 1609598 (-)
LOC118944735 LOC106595845 coding downstream 51539 1583116 ~ 1593615 (-)
LOC118936608 hacl1 coding downstream 63452 1571677 ~ 1581702 (-)
LOC118944736 NA coding downstream 69579 1574364 ~ 1575575 (-)
LOC118964345 NA coding downstream 764123 879000 ~ 881031 (-)
LOC118944740 LOC106595845 coding upstream 20002 1739961 ~ 1750262 (-)
LOC118944751 LOC106595628 coding upstream 30460 1750419 ~ 1755795 (-)
LOC110515047 LOC106595845 coding upstream 186178 1906137 ~ 1910903 (-)
LOC110516567 LOC106595628 coding upstream 196612 1916571 ~ 1953363 (-)
LOC118944769 NA coding upstream 454299 2174258 ~ 2190541 (-)
G215951 LOC100136727 non-coding downstream 2161 1630781 ~ 1642993 (-)
G215813 NA non-coding downstream 62880 1581980 ~ 1582274 (-)
G215806 NA non-coding downstream 111228 1523294 ~ 1533926 (-)
G215807 NA non-coding downstream 114164 1521400 ~ 1530990 (-)
G215972 NA non-coding upstream 55041 1775000 ~ 1806023 (-)
G215973 NA non-coding upstream 70988 1790947 ~ 1814787 (-)
G215985 NA non-coding upstream 221269 1941228 ~ 1941675 (-)
G216026 NA non-coding upstream 305768 2025727 ~ 2025938 (-)
G215950 NA other downstream 27014 1600226 ~ 1618140 (-)
G215354 NA other downstream 725481 915959 ~ 919673 (-)
G214982 NA other downstream 1163545 481047 ~ 481609 (-)
G214663 NA other downstream 1465563 177723 ~ 179591 (-)
LOC118964342 NA other downstream 1570603 63916 ~ 74553 (-)
G216038 NA other upstream 337956 2057915 ~ 2058429 (-)
G216066 NA other upstream 401244 2121203 ~ 2121857 (-)
G216059 NA other upstream 404217 2124176 ~ 2125352 (-)
G216811 NA other upstream 1016902 2736861 ~ 2738467 (-)

Expression


Co-expression Network