G216119


Basic Information

Item Value
gene id G216119
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 2224683 ~ 2226639 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU246112
TTCCATATTTATTATTCTGTTCAAACGTTCGACTAAAAGATTCAACCCTGAGTCCCAATTcattatatagtgcaccactattgaccatagggctctggtcaaaagtagtgcactatatagggaataaggtgccgtTTGGTACAGAGAATTAGTTAAAAGGAGATGGAGTGCTCCCTCTAGTGGGGGAATATAACTATCACTACTACCTCCTACTGGTTGTGGTCTGGTGCAAAATATACTAATGCATATAGAATTAATTTCCTAATGGATACAATAAAgtcatcaacatcaacatcatccACCAtagtcatcatcgtcatcattcaACATCATCCACCATAGTCATCCATCGTCATCATTcatcatcatccatCGTAGtcgtcatcaccatcatcatccatTGTAGtcgtcatcaccatcatcatccatTGTAGTCGTCATCATTCATTGTAGTCATCATCATTCATCATCATCCGTCGTACTCGtcatccaacaccatcattaaaccTTTAATTCATTATAATGCTCTAAATTGTAAAAACCTATCACAGATGGGATGGTTTTATATTTTCATGCTTatgaataaacaaacatatatttaaataataaatacataaataatcattcaaataaataataGTACTGGAAGCAACTTCCACTGTATGACATGATCTCTATGACCAGTCAAACCCTGAAGCAGTTATGTCTTTCACCATCTCAACACTGACAATCTCAAGTGGTTTAGTTGTTCTTTTTGAGCCTTTGGATGTGCCATAGCTTTGTCCCCTCTACCTGCTGTTTCCATGTCCCCCAAATCCATGTCTGGGGACTATCCAGGTGCATCATTCAGCCTACATCGTCACTAGTAAGCCGATTGTCAAATCTCACAGCGCCTTCTCATAGTGTTGCCGTATGTTGATTCCTTTGTGTATTAGTTCATTGTAAGAGATCACGTCCCCTGTAATCGTTGGTGTTGAATGGAACCAACATTGTCTCCATGATGCTTTGAATACAGTAACACAGCTGGGCTTCAGCCTAATGACAATGGAGGTGAGGACTTTCCATTGAAGGAGATCTGGGGAATGCTGGCTGCTCTCTCAGATCTCTCAGCCAACTCCTGGAATAAACAGTAGTACAGCAGGGTTATACGAGCTTCTCAATTAGGACTTTTTATCATTTTAGTTAGCAGACAGTCTTATGCAGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU246112 True 1205 lncRNA 0.39 3 2224683 2226639

Neighbor

gene id symbol gene type direction distance location
LOC110513668 LOC106595161 coding upstream 100779 2010277 ~ 2123904 (+)
ahr1a LOC106605709 coding upstream 237203 1960781 ~ 1987480 (+)
LOC118944758 LOC100136727 coding upstream 339777 1882585 ~ 1884906 (+)
LOC118944757 LOC100136727 coding upstream 346599 1875760 ~ 1878084 (+)
LOC118944756 LOC100136727 coding upstream 361457 1860933 ~ 1863226 (+)
abcb5 LOC106574003 coding downstream 31912 2258551 ~ 2284314 (+)
LOC118944474 NA coding downstream 187832 2414471 ~ 2419132 (+)
fhod3b fhod3 coding downstream 379384 2606023 ~ 2853339 (+)
LOC110517892 LOC106606083 coding downstream 644773 2871412 ~ 2883602 (+)
LOC110520727 LOC106606081 coding downstream 697802 2924441 ~ 2943873 (+)
G216111 NA non-coding upstream 30300 2193884 ~ 2194383 (+)
G216087 NA non-coding upstream 76503 2147948 ~ 2148180 (+)
G216069 NA non-coding upstream 94858 2129317 ~ 2129825 (+)
G215890 NA non-coding upstream 99324 2124174 ~ 2125359 (+)
G215919 NA non-coding upstream 124434 2060052 ~ 2100249 (+)
G216214 NA non-coding downstream 74496 2301135 ~ 2301430 (+)
G216226 NA non-coding downstream 85087 2311726 ~ 2312188 (+)
G216237 NA non-coding downstream 107135 2333774 ~ 2334385 (+)
G216270 NA non-coding downstream 149680 2376319 ~ 2376682 (+)
G216277 NA non-coding downstream 153828 2380467 ~ 2380739 (+)
G215843 LOC100136727 other upstream 419428 1804388 ~ 1805255 (+)
G215830 NA other upstream 477401 1670411 ~ 1747282 (+)
LOC118944469 LOC100136727 other upstream 544576 1635598 ~ 1680107 (+)
G215820 LOC100136727 other upstream 608304 1609638 ~ 1616379 (+)
G216353 NA other downstream 234578 2461217 ~ 2462744 (+)
G216438 NA other downstream 345756 2572395 ~ 2574899 (+)
LOC110506718 LOC102207154 other downstream 790525 3017105 ~ 3022686 (+)
G216640 LOC106606088 other downstream 813347 3039986 ~ 3041517 (+)
G216673 NA other downstream 879715 3106354 ~ 3108233 (+)

Expression


Co-expression Network