XLOC_021769 (mxra8b)


Basic Information

Item Value
gene id XLOC_021769
gene name mxra8b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 29889089 ~ 29906163 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043189
TTTGTTTTCAGTCGCTGGTCGACGAACTTGAGAGGCGAGGAACATTACAGTTCCAGTAGGGTCGGATGTGGTTCTGCCGTGTCATAACCAGAGGATGGTTTGGAGGCAGGATCGTCTGCGTGACCGTCAGCGAGTTGTGCATTGGGACCTGATCCGGAACCAACCCGATTACACCGTGGAGCGAATTTTAGACATGTTTTCAGGGGGAACAGAGCGCTTATACAATGACTACAACAAAGGCAGAGTCACTATTGCAAAAGACGCCTTCAGTGATGGAAACTTCTCACTAGTTATTAATAATGTGGACATGAATGATAAAGGCATCTATACCTGCAACCTGCATCACCACTATTGCAAAGTCCACCAGTCCGTTCAAATGCAGCTCAACGTCACCAAATCACCTCGAAAGGAAAAGCGCGTCTGGGATGGCGAGAAAGCAGTGTTTGTGGTTCTGGTGGGGAAGAGTGTGGTTCTTCCCTGTGTGATCCGCAGGCAGTTGTGGACGGATAGTCAGAGGGATGAGGGCCAGCAGCAGGTGGTCCACTGGGACTGGCAGGCACCTGGAGTGACCCGTGACCGAGCGGAACGCCTCATTGACATGTACGCCTCTGGAGAGAAGCGGCAGTACGGGCCGCTCTACCTTCAAAAAAAGATGAACATCTCAGCCGATGCCTTTTCTCTTGGGGATTTCTCACTGAGCCTTCATAACATTCAGCCAGCTGATAAAGGCCTGTTTTCCTGCCATCTTCACCATCATTACTGTG
>TCONS_00043190
AAACAATCCTTTGAAGAACACCGTTTCACCGCGCAGCAGAACTAACCACCATCTTCAACCACACTTCAGACATGTTTATTGTGCTGTACACCTGCAGTGCATTGATCTTACCATGTGTCTGGACACAAAACAGCATACCGAGTGTGGTTGTTGAGGCGAGGAACATTACAGTTCCAGTAGGGTCGGATGTGGTTCTGCCGTGTCATAACCAGAGGATGGTTTGGAGGCAGGATCGTCTGCGTGACCGTCAGCGAGTTGTGCATTGGGACCTGATCCGGAACCAACCCGATTACACCGTGGAGCGAATTTTAGACATGTTTTCAGGGGGAACAGAGCGCTTATACAATGACTACAACAAAGGCAGAGTCACTATTGCAAAAGACGCCTTCAGTGATGGAAACTTCTCACTAGTTATTAATAATGTGGACATGAATGATAAAGGCATCTATACCTGCAACCTGCATCACCACTATTGCAAAGTCCACCAGTCCGTTCAAATGCAGCTCAACGTCACCAAATCACCTCGAAAGGAAAAGCGCGTCTGGGATGGCGAGAAAGCAGTGTTTGTGGTTCTGGTGGGGAAGAGTGTGGTTCTTCCCTGTGTGATCCGCAGGCAGTTGTGGACGGATAGTCAGAGGGATGAGGGCCAGCAGCAGGTGGTCCACTGGGACTGGCAGGCACCTGGAGTGACCCGTGACCGAGCGGAACGCCTCATTGACATGTACGCCTCTGGAGAGAAGCGGCAGTACGGGCCGCTCTACCTTCAAAAAAAGATGAACATCTCAGCCGATGCCTTTTCTCTTGGGGATTTCTCACTGAGCCTTCATAACATTCAGCCAGCTGATAAAGGCCTGTTTTCCTGCCATCTTCACCATCATTACTGTGGCCTGCATGAAAGACGGATCTACAGGTTGATCCTCGGCCCTTCTGTCCAGGCTTTGCCTCCAGTGCGCTCCTCCACTGAAGCACAGAAAAACCCTGCTCGTACTGTCCTTCCTGCTGATGATCCAAATACAAACATGGTGGAAGCGCCTCACGTCCTCAATGTAATCCTGCCTGAGAATCAAACCCATCTACTTCATCAAGTGGGCTACATCCTGGTGGTCTTCCTTCTGCTTCTGTTAATGCTTATTGGCATCATCATGACCACGAGACACTGCAGAAAGAAAGGGTATGAGCTTGATGTTGGAAGGAATGAGTGTGGTCGAATGACGTCCATTGAACTCGATGTCACAGAACTGCAACCCTACAATCAGGAAGATATGCGACTGAaCTACAAGAACAACATAATGAAAGAAAGGGCAGAGTCAAACAACTATCCTTCTCCAAAAGTTATTGATTTCAACAGAGAAATGGAGAGAATGTCATGGAAATGAGTGATACTGGGCTGCTGGCTGGTCCAGAGCGAGCTGAGCGAGAACAGACTTTGCATTGAGAACAGGAGTGGAATTACTGTCTTCTTTTCATCATAATAACTGCTTTCATGAACTTATAATACTCACATTCTGTCGATTTAGATAAATCAAATGAAAGTGAATTAGATTTCTTATCATAACCGCAGCGTACCATAAgtgtaattttttaattaaagttataACATATGCCAAATGTGGTTAGGTGGTTTGCTAAGTTCAGCATTTTGGTGGTACTCTAAAATTCTCTGTGGTAGAAACCACTGTAAGTGTCTGATTCTGAATGGAAATTTCCTCGTAAAACTCAGGAAGCAAACATATAGCTGTGGCTTCAGGTCTAAATAGTCAAAGATGGTACACAATTGAACCTCAAAGGCAAACAAATGTACTATTTATGCCATTCTGTtgtatgacaaaaataaaatgtgactttTTAATCTCACATTTGTGACCTTCATAATTCAAATCTGACTTTTTGTCCGTACAATTCAGTTTTTTATCTCACAATTATGAAAAAAGTTCTCTAATTAAGTGATAAAAAGctgaaattgtattatttaatcttATTCTGTGCCAGAAACAAGATACTGATATGTGCATGCATCTGTTATTATGTTTCTTCTAAATTTTGAGTCTTATTGACCAGGACTTCTTTGGtccattgtttttttatatatatagttttttttaacgtTACAGTATGTAGATGAATGTTATGGCACATTTTGCTTTTCCAATACAAGCAAGTTCTATTATCCTTTCCCCATCTTCATTATTGTTGATCAGCTTTTTCCTTGGTCAGTATTGTTTATTTCCACAGCTTATGAAGCATTTGTGCAgtagttttatttgatttttgaatGTACATTTATCTTTAAAGTGCCTGTGGATCATCATGCTGGTATAGAGGACCAATACAATAAAgtttattctgaaa

Function

symbol description
mxra8b Predicted to act upstream of or within cell adhesion. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in lateral line; lateral line system; pectoral fin; and pharynx. Orthologous to human MXRA8 (matrix remodeling associated 8).

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061013-368 Predicted to act upstream of or within cell adhesion. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in lateral line; lateral line system; pectoral fin; and pharynx. Orthologous to human MXRA8 (matrix remodeling associated 8).

Ensembl:

ensembl_id ENSDARG00000062129

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043189 False 764 mRNA 0.51 4 29889089 29895258
TCONS_00043190 True 2349 mRNA 0.42 10 29889129 29906163

Neighbor

gene id symbol gene type direction distance location
XLOC_021768 aurkaip1 coding upstream 296 29883216 ~ 29888793 (+)
XLOC_021767 NA coding upstream 42210 29840859 ~ 29846879 (+)
XLOC_021766 BX571850.1 coding upstream 300531 29588444 ~ 29588558 (+)
XLOC_021765 NA coding upstream 305810 29580543 ~ 29583279 (+)
XLOC_021764 lzic coding upstream 313398 29569893 ~ 29575691 (+)
XLOC_021770 si:ch73-236e11.2 coding downstream 2185 29908348 ~ 29938201 (+)
XLOC_021771 dvl1a coding downstream 60303 29966466 ~ 29992458 (+)
XLOC_021772 tnfrsf9a coding downstream 100043 30006206 ~ 30010042 (+)
XLOC_021773 uts2a coding downstream 142686 30048849 ~ 30055719 (+)
XLOC_021774 NA coding downstream 496151 30402314 ~ 30433385 (+)
XLOC_021763 NA non-coding upstream 486993 29396181 ~ 29402096 (+)
XLOC_021761 NA non-coding upstream 928780 28944314 ~ 28960309 (+)
XLOC_021777 AL845357.1 non-coding downstream 858124 30764287 ~ 30772886 (+)
XLOC_021782 BX649257.1 non-coding downstream 1073222 30979385 ~ 30979499 (+)
XLOC_021785 NA non-coding downstream 1172401 31078564 ~ 31085951 (+)
XLOC_021790 CR759830.1 non-coding downstream 1527110 31433273 ~ 31433348 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_11994138_12003906 NA coding CI01000001 null 11994138 ~ 12004100 (+)