G216202 (LOC106574003)


Basic Information

Item Value
gene id G216202
gene name LOC106574003
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 2279296 ~ 2284314 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU246218
TGGGATGTAATGTTTTATTTGAATGCATATTTACAAACAAGTAACAGCCTTACATAGTGTACTCATTTAAATATATAGATATTCTTCAAATGCATACTTTGCCTTTTAGAGCATAGTGTCCCTgtttaaaataatacaaatatcaCAGTATACAATAACATACAACAGTCTTCTGAACATCAACCTCTCATATTTACAGGTATACAACCTTTCCCAATCACTGCTTTTATCCAGTCATTTAACTGTGATAATGTGTCTTTCTGTTTTTCTTATAGAAATACATACTGTACCTGTTGTCTTCAGACAATGAAAGGTGCCATGGTCAAGAACAGTTCATTCATTCGAGGCAGCTTATCAAAACTTATTTGTGCTGATGTCCGTGCTCCAGCATTACTGCTAAAGTGAGTAATACAGTGAGTAACCAATAGCACAGTAACCCAATAGGCTACATTTCAGTGCACCACCTACATGTGATCAAACCAATTGACACTGAGACAGTTTGCATCATGCAATTGAACATCATTTTAGCAGTCCGTTCAAAGTGAGTTATGGCTGCCATATCATTGTCCATATAGATTCCTTATTCtttatacatttttataaataaccttcatttaaccaggaagTCCCATTATGGACAGGAGACCTCTTTCTCAAGGGGGACCTGGCTAAGAAGTGCAGCTCAATAAAAAGAGCTCACAAAACAACATTCAACAGAACAGTACATACGCTGCAAAACATCAATCTGAATATGAGTTAGTGGTTGACCTGTGCGTTGACCAGGGCATAGTAAGCCCCCCCTTTAGCCATGAGGTCAGTATGTGTACCCTGCTCTGTCACCTGACCATACTGAATTACCGCTATCTGGTCTGCGTTCTGGATGGTAGACAGGCGGTGGGCGATCACGATGCAGGTGCGGCCCTGCCGGGCGGCGTCTAAAGCCTGTTAGGGCGGAAGTGGCTTCATCCAGCAGCAGTACTTTAGGCTGCCTGACCAGTGCTCTGGCGATGGCTATCCTCTGTTTCTGACCTCCAGACATCTGGGTCCCCTTGTCCCCAACCCTGGCCCATGATGAAGTCATGGATGTTGGCGTTCTTGGCTGCCTCCTCTATCTCATCCTGAGAGACCTCTCTGCTGTTGTCCCCATACTGGATGTTCTCTGAGATGCTGCAGTCGAACAGGATGGGCTCCTGGGACACCAGGCCCAGCTGAGACCTCAGCCACGACAGGTTCAGGGTCTTAGTATCCAACCCATCCACTAACACTTGTCCTTCAGCAGGGCTATAGAAGCGCTCCAGTAGTTGTATGGAGGTGCTTTTACCACAGCCACTCTCTCCGACCAGGGCCAGGGTCTGACCAGGCCCCACTGACACGTTCAACCCCTGGAGAACCCTCACGTTCTGACGGGTCGGGTACGCAAAGTGGATCCCTCGGAACTCAATGTCCCCGACAAAGTCCGTTggcttctctccctcctcactgTAAATGTCAATCTCTGGTTTCTTCTCCAACAAGCCAAGAATTCTCCCCGCAGCTGCTTTCGCTTTGGCAAAGTCAGGAGCAAAAGATGCTGATTCTCCTATGTTCATGGCAGCAAATATGATCACAGAAAACACACTGCGAAAGAAAAGGACAATGTTGTACTATCACTGCCACTATATCGGCAGACCCTGGTCATGACCCAACTCAACGAGGCTGTCTCAGGGAGatttgggatatgcaaaaaacacacatgTGCATTAATacacatgtgtgaaataggacaaatataagcacccaccaaattaatgttataattatattattactataattTTTATGTTACCGTGTAGTGACAATGTGGCAGCCAAGGGTTCTAGTCAGGGTTGGGGTACATTCCATTTCAATTGCAGTCAATTCAAAACCCAATTCCAACAGCACATTTTCCTCAATGAAAAGCATTGAAGACAActggaattggaatttcagtgtacttcctgaattgactggaatgtaAATGGAATGTACCCCAACCCTGGTGTGAATGTATTCATTTGAGATATAACAGTACCAGAATGTATACTCACAGGAAAACATTTTCATATTCTGTGTGACAGTGAGCAATAAGCCAGGACCCGAAGCGGAAGATTGCAGCATTGACCATGTAAGGGATTGCTTGGGCAACGGCAAATGTTAGTCCGTAGATGGGAGCCTTCACCAAACCGTTCCTGATGTATTCAGTTGAAATCTAATCAGTACTTGACTGTAGGTTATAAGGTCAAACAATCCAAAAGCTGAGTCTATAACAAAGTGAATAACTGTACTCTTACTGGTATGGTCTTTCTAGACTGTCCATGAACTTGTGAAAGAAGACGTCCTCCCGTGTCAATCCAACAACTGTCTTGAAGTTTTCAACGGTCTCTGTAGATATCTACAAAAGATGAATAAAGATTTATTAACGTTTTATTTGAACACATGGTGTCACACACTGATATAGCCCACTGTCTCAAAGTGCATTGCAATTAGGGTTGCATAATAGCAGTAACCTTCCTGAAATTCCCTGGTTATCCAGATATCCTGTTTTAAGGTTTCCCCGATtttctgcttattccctcctgattccggaAAACCTATAACTGGGATTACTGGAAAATCTGGGAATTTTGGAAACATTTTGCAACCCCAATTGCAATAGAAAGTTGATGTTAACCTTCCCAGACTGCTCCAGGGCACCCTGGTCTTTGGAGGCGTGGCCTGCCATTGCCCTCATCTGAATGAAGTTGGCTCCAATGAGGAAGGGCACACAGGCGAGGATGAGGAGGGTGAGCTGCCAGCTGTGGATGAAGGCCACCACAATGGCGATGGTGAGAGCACAGACTGTGTTGGTGGCCAGACCCAACCTAGACCCAGTCGCCtggtggtgaggagagaggaaac

Function

NR:

description
LOW QUALITY PROTEIN: multidrug resistance protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU246218 True 2916 lncRNA 0.44 5 2279296 2284314

Neighbor

gene id symbol gene type direction distance location
LOC110506602 LOC106595809 coding downstream 29787 2243487 ~ 2249509 (-)
LOC118944471 LOC106573719 coding downstream 49858 2225818 ~ 2229438 (-)
LOC118936266 twist1 coding downstream 83870 2193797 ~ 2195426 (-)
LOC118944769 NA coding downstream 88755 2174258 ~ 2190541 (-)
LOC110516567 LOC106595628 coding downstream 325933 1916571 ~ 1953363 (-)
sp8b LOC106573674 coding upstream 1980 2286294 ~ 2292006 (-)
LOC118944775 NA coding upstream 69969 2354283 ~ 2388299 (-)
LOC118944776 LOC105018831 coding upstream 176849 2461163 ~ 2521910 (-)
LOC118964348 LOC106605991 coding upstream 261920 2546234 ~ 2553372 (-)
LOC110519055 LOC106606020 coding upstream 282726 2567040 ~ 2581440 (-)
G216200 LOC106574003 non-coding downstream 1099 2276861 ~ 2278197 (-)
G216199 NA non-coding downstream 8465 2267715 ~ 2270831 (-)
G216188 NA non-coding downstream 37001 2241730 ~ 2242295 (-)
G216187 NA non-coding downstream 37627 2240840 ~ 2241669 (-)
G216216 NA non-coding upstream 18632 2302946 ~ 2303148 (-)
G216217 NA non-coding upstream 20061 2304375 ~ 2304578 (-)
G216225 NA non-coding upstream 24849 2309163 ~ 2309366 (-)
G216228 NA non-coding upstream 28819 2313133 ~ 2313366 (-)
G216258 NA non-coding upstream 71358 2355672 ~ 2356333 (-)
G216059 NA other downstream 153944 2124176 ~ 2125352 (-)
G216066 NA other downstream 157439 2121203 ~ 2121857 (-)
G216038 NA other downstream 220867 2057915 ~ 2058429 (-)
LOC110519742 LOC106595845 other downstream 616229 1661660 ~ 1673583 (-)
G216811 NA other upstream 452547 2736861 ~ 2738467 (-)
G216902 LOC106606079 other upstream 761691 3046005 ~ 3059744 (-)
G217261 NA other upstream 1053872 3338186 ~ 3338580 (-)
G217459 NA other upstream 1402088 3686402 ~ 3689304 (-)
G218073 LOC106605488 other upstream 2154782 4439096 ~ 4440437 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G162293 NA non-coding NC_053127.1 CM020924.1 676665 ~ 683561 (-)