G216354


Basic Information

Item Value
gene id G216354
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 2466698 ~ 2467315 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU246416
ATCCCATTCATTATTACAGGATCTCTACACAATAAAACATAATGAACTTACTGTCAACATCTCCAGTTCCAAAAACAGTTTTTTGAATTTTCCTGGAACTTTCTGATGGAAAGAAAAACAGGTTTAGTTGCCACAACATTTACTGGGTCGACTCAGACCTCCTCCTTGTCCTGTGAAACAGTGTGCACACCCTCCTCCCTCATACAATATTATTACCACCAGAATTAACAATCCCTGTAGCGACCCTGTGTTTATAACCGTGGATATCCACTTTGCTACTTCAGCATGGTTTCGTGGTACAGTTGATGCCACGCAGGGATACGGGCCAGAAGGTTTAGGGTTCGTGGTACAGTTGATGCCACGCAGGGATACGGGCCAGAAGGTTTAGGGTTCGTGGTACAGTTGATGCCACGCAGGGATACGGGCCAGAAGGTTTAGGGTTCGTCGACCACCAAGGACGAGCTCAC

Function

NR:

description
PREDICTED: vinculin isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU246416 True 467 lncRNA 0.46 3 2466698 2467315

Neighbor

gene id symbol gene type direction distance location
LOC118944474 NA coding upstream 47566 2414471 ~ 2419132 (+)
abcb5 LOC106574003 coding upstream 182384 2258551 ~ 2284314 (+)
LOC110513668 LOC106595161 coding upstream 342794 2010277 ~ 2123904 (+)
ahr1a LOC106605709 coding upstream 479218 1960781 ~ 1987480 (+)
LOC118944758 LOC100136727 coding upstream 581792 1882585 ~ 1884906 (+)
fhod3b fhod3 coding downstream 138708 2606023 ~ 2853339 (+)
LOC110517892 LOC106606083 coding downstream 404097 2871412 ~ 2883602 (+)
LOC110520727 LOC106606081 coding downstream 457126 2924441 ~ 2943873 (+)
LOC110520728 LOC106606086 coding downstream 483050 2950365 ~ 2963921 (+)
LOC110506689 LOC106606075 coding downstream 521591 2988906 ~ 2992685 (+)
G216277 NA non-coding upstream 85959 2380467 ~ 2380739 (+)
G216270 NA non-coding upstream 90016 2376319 ~ 2376682 (+)
G216237 NA non-coding upstream 132313 2333774 ~ 2334385 (+)
G216226 NA non-coding upstream 154510 2311726 ~ 2312188 (+)
G216214 NA non-coding upstream 165268 2301135 ~ 2301430 (+)
G216357 LOC106605879 non-coding downstream 10105 2477420 ~ 2483732 (+)
G216362 NA non-coding downstream 16935 2484250 ~ 2484675 (+)
G216416 NA non-coding downstream 69374 2536689 ~ 2537038 (+)
G216433 NA non-coding downstream 99060 2566375 ~ 2567018 (+)
G216438 NA non-coding downstream 105080 2572395 ~ 2574899 (+)
G216353 NA other upstream 3954 2461217 ~ 2462744 (+)
G215843 LOC100136727 other upstream 661443 1804388 ~ 1805255 (+)
G215830 NA other upstream 719416 1670411 ~ 1747282 (+)
LOC118944469 LOC100136727 other upstream 786591 1635598 ~ 1680107 (+)
LOC110506718 LOC102207154 other downstream 549849 3017105 ~ 3022686 (+)
G216640 LOC106606088 other downstream 572671 3039986 ~ 3041517 (+)
G216673 NA other downstream 639039 3106354 ~ 3108233 (+)
G217146 NA other downstream 1013001 3480316 ~ 3481536 (+)

Expression


Co-expression Network