XLOC_021772 (tnfrsf9a)


Basic Information

Item Value
gene id XLOC_021772
gene name tnfrsf9a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 30006206 ~ 30010042 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043195
AGTGAGCGTTTGCTACGAATCAGGACCACTACACTCAAACAgcAAAAATGCTGGCTGGTTTTCCAGGACTGTATAGCTTGCTGATATTCAGTCTAGTGCTGAATTTGACAGTAGGTGTAGATGTTGGCTGTCAGAACTGGACTCCTTCAGGAAAAAATTATGTCTGCTGCACAAGCTGTAAACCAGGAAACCGCTTGGTGAAAAGATGTGGATATGACCCAGCAGAACTCTGTAAACCATGTGAACCTGGCACTTACATAACCGGAACTGATTTCAGCTGTGATATTTGTACCCAATGCATAGGCATACAGTTTGTGGCTAAAAACTGCACAAGCAGCAGTGACACCGTATGCGGCTGCAAGCCTGGATTTCGGTGTGGAGATGCCAAATGTTCTCACTGTGTTACTGAATGCAAAAAAGGAGAGGAGCCCAAAGGCCGAGTATGTGGACAATGTCCTGAGGGAAAATTCAGCGATAAAATCCACAGTACGTGCAAAGAATGGACAAAAagCAGTTGTCCAGATGGATACAAATTGAAAAAAGGAAACTTGACCAGTGACAGCACATGCATTCCACCACCTTCGAGTAGTGTAAGAACAGGTAAGGATAGAGAACAGAATATTGAATAAGAAGTTATAATAGCACATTATCTAATTATCATGTGTTTGTCACAGTAACTGAACAAGAAACATTGCCTGTCATTAGCAAAGAAAAAGGTAAATGAGGTTTGCGTAAATAAAATCAAGTACCTTTTACTGAATTTCACATTCTAAGCATCTTTCTTTTctgggtttcttcaagacgagaTGAATTGGCTTCCagttttgattgcagcaatgatagCAGGGTTGGCTCTTCTTTGCATCATATTGTCA
>TCONS_00043196
AGTGAGCGTTTGCTACGAATCAGGACCACTACACTCAAACAgcAAAAATGCTGGCTGGTTTTCCAGGACTGTATAGCTTGCTGATATTCAGTCTAGTGCTGAATTTGACAGTAGGTGTAGATGTTGGCTGTCAGAACTGGACTCCTTCAGGAAAAAATTATGTCTGCTGCACAAGCTGTAAACCAGGAAACCGCTTGGTGAAAAGATGTGGATATGACCCAGCAGAACTCTGTAAACCATGTGAACCTGGCACTTACATAACCGGAACTGATTTCAGCTGTGATATTTGTACCCAATGCATAGGCATACAGTTTGTGGCTAAAAACTGCACAAGCAGCAGTGACACCGTATGCGGCTGCAAGCCTGGATTTCGGTGTGGAGATGCCAAATGTTCTCACTGTGTTACTGAATGCAAAAAAGGAGAGGAGCCCAAAGGCCGAGTATGTGGACAATGTCCTGAGGGAAAATTCAGCGATAAAATCCACAGTACGTGCAAAGAATGGACAAAAagCAGTTGTCCAGATGGATACAAATTGAAAAAAGGAAACTTGACCAGTGACAGCACATGCATTCCACCACCTTCGAGTAGTGTAAGAACAGTAACTGAACAAGAAACATTGCCTGTCATTAGCAAAGAAAAAGacgagaTGAATTGGCTTCCagttttgattgcagcaatgatagCAGGGTTGGCTCTTCTTTGCATCATATTGTCAGTGGTGGCATATGTTAaggcacaaaacaaaacaaaaaagaaggcAAAAACTGAGCAAGGCAATTCAGACGACTCTACGATTATGGTGGTGGAGCAAGAACACTGTAGTTTTCATCATCCTGAGCAGGAACAGGGTGGAAGCTCGCAATCCATCAATACGGAAAACTCAGAGTCCAAACTCATAGTGTGATGTGACTGAGGCCTGTTGCACAAATGAGTTGAAACTCCATGGTGTATCACGAACCTTAATCTCTGTTAACCCAGGGATAGAGCTTGTGATTGTC
>TCONS_00043197
AGTGAGCGTTTGCTACGAATCAGGACCACTACACTCAAACAgcAAAAATGCTGGCTGGTTTTCCAGGACTGTATAGCTTGCTGATATTCAGTCTAGTGCTGAATTTGACAGTAGGTGTAGATGTTGGCTGTCAGAACTGGACTCCTTCAGGAAAAAATTATGTCTGCTGCACAAGCTGTAAACCAGGAAACCGCTTGGTGAAAAGATGTGGATATGACCCAGCAGAACTCTGTAAACCATGTGAACCTGGCACTTACATAACCGGAACTGATTTCAGCTGTGATATTTGTACCCAATGCATAGGCATACAGTTTGTGGCTAAAAACTGCACAAGCAGCAGTGACACCGTATGCGGCTGCAAGCCTGGATTTCGGTGTGGAGATGCCAAATGTTCTCACTGTGTTACTGAATGCAAAAAAGGAGAGGAGCCCAAAGGCCGAGTATGTGGACAATGTCCTGAGGGAAAATTCAGCGATAAAATCCACAGTACGTGCAAAGAATGGACAAAAagCAGTTGTCCAGATGGATACAAATTGAAAAAAGGAAACTTGACCAGTGACAGCACATGCATTCCACCACCTTCGAGTAGTGTAAGAACAGTAACTGAACAAGAAACATTGCCTGTCATTAGCAAAGAAAAAGGTAAATGAGGTTTGCGTAAATAAAATCAAGTACCTTTTACTGAATTTCACATTCTAAGCATCTTTCTTTTctgggtttcttcaagacgagaTGAATTGGCTTCCagttttgattgcagcaatgatagCAGGGTTGGCTCTTCTTTGCATCATATTGTCAGTGGTGGCATATGTTAaggcacaaaacaaaacaaaaaagaaggcAAAAACTGAGCAAGGCAATTCAGACGACTCTACGATTATGGTGGTGGAGCAAGAACACTGTAGTTTTCATCATCCTGAGCAGGAACAGGGTGGAAGCTCGCAATCCATCAATACGGAAAACTCAGAGTCCAAACTCATAGTGTGATGTGACTGAGGCCTGTTGCACAAATGAGTTGAAACTCCATGGTGTATCACGAACCTTAATCTCTGTTAACCCAGGGATAGAGCTTGTGATTGTCGGTGTATTCCACCCTCTGAAGCCACCACATTGAAGAGTGAACACCAAACTGGTGTTCAAAGCTGGCCACTTCAAAAGGGTCCTCTGAAATGAAGGATTTCAAAGGATATCGGGCACTTTGGGACTTGATCCTTTGAGTAGGGAAGTTGTTTGGTGTTGAGGTTTGGCCCGAAACTGAGCACAAACATACAGCAGACCGGCTTTCTGCAACAGGCCTCTGGACAGCATTGCTACACTAAAacgaagctttaaaaaaaaaaaaaaaaaaaa
>TCONS_00043198
ACACTCAAACAgcAAAAATGCTGGCTGGTTTTCCAGGACTGTATAGCTTGCTGATATTCAGTCTAGTGCTGAATTTGACAGTAGGTGTAGATGTTGGCTGTCAGAACTGGACTCCTTCAGGAAAAAATTATGTCTGCTGCACAAGCTGTAAACCAGGAAACCGCTTGGTGAAAAGATGTGGATATGACCCAGCAGAACTCTGTAAACCATGTGAACCTGGCACTTACATAACCGGAACTGATTTCAGCTGTGATATTTGTACCCAATGCATAGGCATACAGTTTGTGGCTAAAAACTGCACAAGCAGCAGTGACACCGTATGCGGCTGCAAGCCTGGATTTCGGTGTGGAGATGCCAAATGTTCTCACTGTGTTACTGAATGCAAAAAAGGAGAGGAGCCCAAAGGCCGTAAGACTCTTTAAGAAGCTCTCGAACAGGACATGACTTGCTTTTTGTTGCACTGCCaatttattttctgtaattaaattCTTGCAGGAGTATGTGGACAATGTCCTGAGGGAAAATTCAGCGATAAAATCCACAGTACGTGCAAAGAATGGACAAAAagCAGTTGTCCAGATGGATACAAATTGAAAAAAGGAAACTTGACCAGTGACAGCACATGCATTCCACCACCTTCGAGTAGTGTAAGAACAGGTAAGGATAGAGAACAGAATATTGAATAAGAAGTTATAATAGCACATTATCTAATTATCATGTGTT

Function

symbol description
tnfrsf9a Predicted to enable cytokine binding activity and signaling receptor activity. Predicted to be involved in regulation of cell population proliferation. Predicted to act upstream of or within apoptotic process and negative regulation of cell population proliferation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane. Orthologous to human TNFRSF9 (TNF receptor superfamily member 9).

GO:

id name namespace
GO:0070482 response to oxygen levels biological_process
GO:0036293 response to decreased oxygen levels biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0007508 larval heart development biological_process
GO:0042127 regulation of cell population proliferation biological_process
GO:0046034 ATP metabolic process biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0120035 regulation of plasma membrane bounded cell projection organization biological_process
GO:0098655 cation transmembrane transport biological_process
GO:0098660 inorganic ion transmembrane transport biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0002164 larval development biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0001666 response to hypoxia biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain cellular_component
GO:0009897 external side of plasma membrane cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0005588 collagen type V trimer cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0019955 cytokine binding molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060421-8213 Predicted to enable cytokine binding activity and signaling receptor activity. Predicted to be involved in regulation of cell population proliferation. Predicted to act upstream of or within apoptotic process and negative regulation of cell population proliferation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane. Orthologous to human TNFRSF9 (TNF receptor superfamily member 9).

Ensembl:

ensembl_id ENSDARG00000060498

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043195 False 875 lncRNA 0.41 6 30006206 30009399
TCONS_00043196 False 999 mRNA 0.44 9 30006206 30009773
TCONS_00043197 False 1353 lncRNA 0.43 8 30006206 30010042
TCONS_00043198 True 723 lncRNA 0.42 5 30006236 30009190

Neighbor

gene id symbol gene type direction distance location
XLOC_021771 dvl1a coding upstream 13748 29966466 ~ 29992458 (+)
XLOC_021770 si:ch73-236e11.2 coding upstream 68005 29908348 ~ 29938201 (+)
XLOC_021769 mxra8b coding upstream 100043 29889089 ~ 29906163 (+)
XLOC_021768 aurkaip1 coding upstream 117413 29883216 ~ 29888793 (+)
XLOC_021767 NA coding upstream 159327 29840859 ~ 29846879 (+)
XLOC_021773 uts2a coding downstream 38807 30048849 ~ 30055719 (+)
XLOC_021774 NA coding downstream 392272 30402314 ~ 30433385 (+)
XLOC_021775 dnajc11a coding downstream 697795 30707837 ~ 30724909 (+)
XLOC_021776 asxl1 coding downstream 720079 30730121 ~ 30752553 (+)
XLOC_021777 AL845357.1 coding downstream 754245 30764287 ~ 30772886 (+)
XLOC_021766 BX571850.1 non-coding upstream 417648 29588444 ~ 29588558 (+)
XLOC_021765 NA non-coding upstream 422927 29580543 ~ 29583279 (+)
XLOC_021763 NA non-coding upstream 604110 29396181 ~ 29402096 (+)
XLOC_021761 NA non-coding upstream 1045897 28944314 ~ 28960309 (+)
XLOC_021782 BX649257.1 non-coding downstream 969343 30979385 ~ 30979499 (+)
XLOC_021785 NA non-coding downstream 1068522 31078564 ~ 31085951 (+)
XLOC_021790 CR759830.1 non-coding downstream 1423231 31433273 ~ 31433348 (+)

Expression


Co-expression Network