G216859


Basic Information

Item Value
gene id G216859
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 2849231 ~ 2853337 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU247046
TTTCTTAAGAGATCTTTTATTGCCAGATGTTCATACATACAGTTGTTGTTAGAGGGGCGAAGACGCAAGAAAAGCTCACTGAGTCTGGATGTGCTTGTGTCCAAGTCCCACACTGACTTACAGTACAGCAGTGGGGGAGAAGGAGATAATATAGCCAATCACAGAAAGcatggtctgcatcccaaatggcaccccattccctacacagtacactacttttggactctatgggtcctggtaaaaaaaaaaaagaagaagaagtagtgcactctatagggaatagggtgccatttgggacacactccaTGTTTTATTGAGTGCAATGTAATGAAAGGCTGCTGAAGGTTCCATAGGAGTACTAGgggctgaagcgttacagatggCATCCTTTCAGATggagccgacatatgcagtgtttaccatgaatgcagtctATGCTAATGCAGGAACATTTTCAATCACGCTAAAACGCTGAagttcagcgatacagattgaatccagTCCTAGGTGGTTACATCGACCACTCCGTCTATCCTAATGTGTTTCAAGTCATGTGGGGAGGGGAAACAATAAAACATAACAAACGCTAAAGCCTCTGAAAATCTCCCTTTATCCATAACATGACGTGACACGCCTCATCTGTAGACATTTTTTAAAACCATGCATGGTTTGGTTTTCACTTAAATTACAATTTCCATAGAATAACACTGCTTTGTTTAACCTATAATACACTATTCTATACAAAATACCAACAAGTGAAAGACATAAAACACATCGTTGTGACATTTACATCATTTTACAGCATTCTTCCCCCATTATTACTTTACATGTACTCAGAGTTACAATACTCCAAATGACCATCTGAGAAAAAGGCTGAAAGAATATACTTTCTCACTGTTAATGTTCTGCTTTTCCTCAATGAAAGACGCATGCTACAAATGGTGTATAAGGTGCTGGATAGTTTCATACCAAATTGTAAGTTCTCCATGAGAAAGACATATACTTGTAGGTGTGTGACTGTTTTGTTGTGGCTTGTGTTGCTGCAAGCATATATTCTTTCATGTTTAGTCGACAATGGCTGTTTCCATCACAGTGAATGTTTGTGACTGTGTAGAATCGTCATACAATTCTCTACACAATTCCAAATGTAAACTGGAATTATGCACTTTAAAAAACGAGCTATCTAGCTGACTGTAACCACTACACCTCAATAAAAGTCAACAGTGTAGGAACGTTCAGATATACTATATGCCCTTATTCTACATTAAGGCAAATGGAAACAACTAATATCTTTTTGTAGATcattttttgtgacaaaactgctaaAATGGAAATATTGTCATTAGACAATTAGCTATAACCCTAGTTTAGTTGTGATTCGAAATAAAACTGCAATGTGCAAATGGAAGAGGAGAACTGTTTCCAAGACATAAAGCCATGGAACATAGTACTGACATGTATTCATCTAGGAAAGAATGAAAACAGGAAGTCACAGCTGTTGAATTGACCTAAGGAGGAAGTCCTTTCATTACACACAGTAACATTTTCTGTAACAAATATCTCCCTGAACATTACTGAATAAATAGACTTGTCTATAAAAGGCACTCATTCAGTTGAAGCTCATATCGTTTTTCTATAATAACCAATTATTCATCTCTTACTTTTTTAAACAATTGTTAAATGTTGCCTAACTCTTTGAcacagagagtaaagagagagtacGTAAATGTAACTAGTGTAAATATATCTCCCTGTCGGTTCTACCACTCCACAATAAGTATGTCTCAACCATAGAAGAAGGCTTTGCAGCGAACAACAGCAGGAGCTTGCGTAACACTGGTGTCATGCATGCAACACGTGTGTAATTGTAGGTACTAGGCAGGCCTATAGGCTAAAGCTGTAACATTCGCTACGCGTGATTGACAGACGTCAGTCTGTCTGGACCCAGTAGCATCGTCCCTTCTGTACACTTGTCCGCTCACAGACTGTTCTCACCAACGTTGATGACTCTGATATGCTATGTGTTTTTTTAAAAGTGGAAACCAGTAATTCAATTGTATGTAGTAAATGATACCTTCCCTCTTAACACATCATGGTGTGTCCTCTTGGAATTCCAGTTTGTTCCATCGGTATAAAATCCAACTGAATCAACAACATGCAAAATTGGAAACATTTTAGTTTGCAGAAGTCAAAGGAATATGTTCACTTTTCCTCTGAAATTAGAGTGTATAATCAGTTGTGCTACTGTTTCATTATTGGTTCTGTCTGGGGGAATTCTTTCATTCATCTGATATCTGATTGGTACATCAGTGTGTGTCAAGGATTTCCCCTTCCTTTCCTCTAAATATCCAACTTCTACATCCAGTGCAAATATTCCTTCTCTGAGCACCTTTTTCTCACACA
>TU247047
CTGAagttcagcgatacagattgaatccagTCCTAGGTGGTAACGCTGAagttcagcgatacagattgaatccagTCCTAGGTGGTTACATCGACCACTCCGTCTATCCTAATGTGTTTCAAGTCATGTGGGGAGGGGAAACAATAAAACATAACAAACGCTAAAGCCTCTGAAAATCTCCCTTTATCCATAACATGACGTGACACGCCTCATCTGTAGACATTTTTTAAAACCATGCATGGTTTGGTTTTCACTTAAATTACAATTTCCATAGAATAACACTGCTTTGTTTAACCTATAATACACTATTCTATACAAAATACCAACAAGTGAAAGACATAAAACACATCGTTGTGACATTTACATCATTTTACAGCATTCTTCCCCCATTATTACTTTACATGTACTCAGAGTTACAATACTCCAAATGACCATCTGAGAAAAAGGCTGAAAGAATATACTTTCTCACTGTTAATGTTCTGCTTTTCCTCAATGAAAGACGCATGCTACAAATGGTGTATAAGGTGCTGGATAGTTTCATACCAAATTGTAAGTTCTCCATGAGAAAGACATATACTTGTAGGTGTGTGACTGTTTTGTTGTGGCTTGTGTTGCTGCAAGCATATATTCTTTCATGTTTAGTCGACAATGGCTGTTTCCATCACAGTGAATGTTTGTGACTGTGTAGAATCGTCATACAATTCTCTACACAATTCCAAATGTAAACTGGAATTATGCACTTTAAAAAACGAGCTATCTAGCTGACTGTAACCACTACACCTCAATAAAAGTCAACAGTGTAGGAACGTTCAGATATACTATATGCCCTTATTCTACATTAAGGCAAATGGAAACAACTAATATCTTTTTGTAGATcattttttgtgacaaaactgctaaAATGGAAATATTGTCATTAGACAATTAGCTATAACCCTAGTTTAGTTGTGATTCGAAATAAAACTGCAATGTGCAAATGGAAGAGGAGAACTGTTTCCAAGACATAAAGCCATGGAACATAGTACTGACATGTATTCATCTAGGAAAGAATGAAAACAGGAAGTCACAGCTGTTGAATTGACCTAAGGAGGAAGTCCTTTCATTACACACAGTAACATTTTCTGTAACAAATATCTCCCTGAACATTACTGAATAAATAGACTTGTCTATAAAAGGCACTCATTCAGTTGAAGCTCATATCGTTTTTCTATAATAACCAATTATTCATCTCTTACTTTTTTAAACAATTGTTAAATGTTGCCTAACTCTTTGAcacagagagtaaagagagagtacGTAAATGTAACTAGTGTAAATATATCTCCCTGTCGGTTCTACCACTCCACAATAAGTATGTCTCAACCATAGAAGAAGGCTTTGCAGCGAACAACAGCAGGAGCTTGCGTAACACTGGTGTCATGCATGCAACACGTGTGTAATTGTAGGTACTAGGCAGGCCTATAGGCTAAAGCTGTAACATTCGCTACGCGTGATTGACAGACGTCAGTCTGTCTGGACCCAGTAGCATCGTCCCTTCTGTACACTTGTCCGCTCACAGACTGTTCTCACCAACGTTGATGACTCTGATATGCTATGTGTTTTTTTAAAAGTGGAAACCAGTAATTCAATTGTATGTAGTAAATGATACCTTCCCTCTTAACACATCATGGTGTGTCCTCTTGGAATTCCAGTTTGTTCCATCGGTATAAAATCCAACTGAATCAACAACATGCAAAATTGGAAACATTTTAGTTTGCAGAAGTCAAAGGAATATGTTCACTTTTCCTCTGAAATTAGAGTGTATAATCAGTTGTGCTACTGTTTCATTATTGGTTCTGTCTGGGGGAATTCTTTCATTCATCTGATATCTGATTGGTACATCAGTGTGTGTCAAGGATTTCCCCTTCCTTTCCTCTAAATATCCAACTTCTACATCCAGTGCAAATATTCCTTCTCTGAGCACCTTTTTCTCACACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU247046 False 2403 lncRNA 0.38 3 2849231 2853337
TU247047 True 1977 lncRNA 0.37 2 2849231 2851246

Neighbor

gene id symbol gene type direction distance location
LOC110520772 LOC108270036 coding downstream 244465 2583240 ~ 2604766 (-)
LOC110519055 LOC106606020 coding downstream 267791 2567040 ~ 2581440 (-)
LOC118964348 LOC106605991 coding downstream 295859 2546234 ~ 2553372 (-)
LOC118944776 LOC105018831 coding downstream 327321 2461163 ~ 2521910 (-)
LOC118944775 NA coding downstream 460932 2354283 ~ 2388299 (-)
LOC110517891 LOC106606082 coding upstream 2761 2856098 ~ 2869094 (-)
c4b c4 coding upstream 35734 2889071 ~ 2916355 (-)
LOC118964349 LOC106573444 coding upstream 110309 2963646 ~ 2988272 (-)
LOC110520729 LOC106606076 coding upstream 138887 2992224 ~ 2997425 (-)
LOC110506699 LOC106606088 coding upstream 169471 3022808 ~ 3058765 (-)
G216837 fhod3 non-coding downstream 35562 2809997 ~ 2813669 (-)
G216819 NA non-coding downstream 73933 2772490 ~ 2775298 (-)
G216814 NA non-coding downstream 83297 2765075 ~ 2765934 (-)
G216810 NA non-coding downstream 113466 2735534 ~ 2735765 (-)
G216808 NA non-coding downstream 117411 2731024 ~ 2731820 (-)
G216868 LOC106605921 non-coding upstream 21853 2875190 ~ 2886434 (-)
G216871 NA non-coding upstream 53975 2907312 ~ 2981783 (-)
G216874 NA non-coding upstream 65442 2918779 ~ 2921114 (-)
G216877 LOC106606081 non-coding upstream 75762 2929099 ~ 2931363 (-)
G216892 NA non-coding upstream 105219 2958556 ~ 2959009 (-)
G216811 NA other downstream 110764 2736861 ~ 2738467 (-)
G216059 NA other downstream 723879 2124176 ~ 2125352 (-)
G216066 NA other downstream 727374 2121203 ~ 2121857 (-)
G216038 NA other downstream 790802 2057915 ~ 2058429 (-)
LOC110516567 LOC106595628 other downstream 896643 1916571 ~ 1953363 (-)
G216902 LOC106606079 other upstream 192668 3046005 ~ 3059744 (-)
G217261 NA other upstream 484849 3338186 ~ 3338580 (-)
G217459 NA other upstream 833065 3686402 ~ 3689304 (-)
G218073 LOC106605488 other upstream 1585759 4439096 ~ 4440437 (-)
LOC118944829 LOC106606066 other upstream 1685325 4535483 ~ 4553394 (-)

Expression


Co-expression Network