G216868 (LOC106605921)


Basic Information

Item Value
gene id G216868
gene name LOC106605921
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 2875190 ~ 2886434 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU247057
CTCTGATTGGGAGAACAGCTGGTCCAATCATATTTATTGAGATTAAAACATTCAGACAAGAATGTATCACACATACAATGAAAATGTTTAACTGCTGTGTCAATGTAGCAGTTGTTTAAAATTGTCACGGCCgtcgtcggaatgagaccaaggtgcaacgtggtgagcgtacattttattttatttgttaaaatgtcgccaaaaaaacaagaaataacaaaaacgaccgtgaagcttacaaggGCTATAGTGCCCATAACAAGATAACTCCCCACAATGATCaaagggaaaaaggctgcctaagtatgattcccaatcagagacaacgacagacaactgtccctgattgagaaccatacccggccaaaacatagaaatacaaaaacatagaaaacagaacatagaatgcccacccaaatcacaccctgaccaaaccaaatagagacaaaaaaaaggctctctaaggtcagggcgtgacaaatataCAGTCTACTGATGTGTCAATGTAGCAGTTGTTTTTAATATACAATCTACTGCTGTGTCAATGTAGCATTTGTGGCAGACAGTGCAGCAGCAAGCATGTAATGCAAACTCTTATTCATAAAATGGAGTGCCAAACAAGAACTCAACAATAACACACTAAAACATACAGAACCATACCCatacagctgtctatcgttgttttattgcttctttaatcagaacaacagttttcagctgagctaacataattgcaaaagatttttctaatgatcaattagccttttaaaatgagaaACTTggtttagctaacacaacgtgccattggaacacaagagtgatggttgctgataatgggcctctgtacgcctatgtagatattacataaaaaatctgccatttccagctacaatagtcatttacaacattaacaatatctacactatGTTCCTGATcaacttgatgttattttatggacataaaatgtgcttttctttcaaaaacaaggacatttctaagtgaccccaaacttttgaacggtagtgtacatttttCACGTTGCACAAGAAACATACATAATACAAAAGTTGTCCGAATCAGGGATGTATCAACCCCTCACCACTGTCCCCAGAACATTTGTAGCAGATGAAGTTGAGCCTCTGGTTCTCCTCCAGACTAACCCATTGCTGCCTCCCGGTGGTCTGTACAGCCCCTGCAATCCCACAGTCCTGCTGGCTGTCTGAGCCGTGCCCGGGGGCCCAGTTCTGGTAGCAGCCTGCATCAGACCTGATCCAGAACCAGAAGTGGAATGAACAGGTGAAGCGCAGGCCCACCCAGACGTGGGATGAGGTGGCGTCGGCAGCCCTCTCTGTCACCCAGTACTGAAGCAGCTCTGTAGTGATCGAGACCAGGTCAACGTGGTGCTCTCTGCAGTAGCTCAGGGCCTCGTTCCACGTCATGTTCTCATGGATCAATATCAGGTTGTCTGAGAGAAATAAAGATATTAAAGATAGATAACATGGAGCCCATTCAACAAAATGTAGATTTGCATGCATTTATACCTCTGCTCTGTAATATAACATCTTTGAAGCAACATAAATCCACAGCCAAACAAAAAATAGACTATTaggctttcaacatgtcaataattGTGATATAATGATGAAAGTTACCTGGACTTAAACCTTGACTGTTTTCATTTGGCATAACAGTGGAGAGACTGACAGGCCCTGTAGTACTGTATGGGGCAGTCTCAGCCACTGTGGTTATATGTAGGGCAGAAGTATGTTCAGTAGTCACTTGTGTAATGCTGTGTTGCATTTCTGTGTCTGCAGTCTCAGTTGTTGATTGATGTTTTACATTCTCAGTAGTAAGGTGTTTAGTAGTCGCCTCTTCAGTTGAAACATGCACAGTGGTATTGAATGTACTTGGTAAAGACGTGGAGGAAATGTTTTGGACATTAGCATTAGAAGCTCTTGTAGGTGAGAAATCAGTAGTCACTTTCTCTGTAGTTGAGTGTTCAGTAGTTAACATTTCAGTTGAAGCATGTACTGTGGTAGTTGGTACAGACGATGAGATAATGCTTTGAAAAGGTACAGTAGGTGCACTTTCTGTATTTAGGTGTTCAGTAGTTAACTGTTCAGTTGAAACTGTTCTATTGAATGTAGTTGGTATAGACGTTGGGGGACTGTTTTGAACAGGAACagtagtcagtgggtcagaggtcaggTGTTCAGTAGAAACATGCACTGTGGTATTGAACGCAGTTGGTACTGGTGTTGAGGGAGTGTTTCCAACAGGTACAGTTGTTTCAGGTAAGTAAGCAGTAGTGGCTTGGTTAGCTGTTGAGCGTTCAGGAGTTGCCTCTTCAGTAGAAATACGCACTGTGGTATTGAAAGTAGCGCTTGTAGGTATGTAACCAGTAGTTGCTTGCTCTCTAGTTAATGTAGTTGGTACAGGCATTGAGATATTGctttgaacaggtacagtagttgctgggtcagaggttaggtgttCATTAGCTAACTGTTCAGTTGAAACATGTTCTGTGGAAATCAATGAAGTTGGTACAGATATAGAGATATTGCTTTGAACAGGTACAATAGTCGCTTGGTCAGACGTTAGGCGTTCAGTAGTCAACTGTTTAGTAACATTTACTGTGATATTGAATGTAGTTGGTttttgaacaggtacagtagtcagtgggtcagaggttaggtgttCAGTTGAAGCATgttctgtggtgttgaatgtagttTGTACTGGTGTTGAGGGGGTGttttgaacaggtacagtagtcagtgggtcagaggttaggtgttCAGTAGTTAACTGTTCAGTTGAAGCATGTTCTGTGGTATTGAATGTGGTTGGTACTGGTGTTGAGGGACTGTTTTGGACGTTTGAAGCAGAAGCACTTGTAGGTAAGTAACCAGTAGTTTCT
>TU247062
TTCAGTTGAAGCATGTTCTGTGGTATTGAATGGGGTTGGTACTGGTGTTGAGGGACTGTTTTGGACGTTTGAAGCAGAAGCACTTGTAGGTAAGTAACCAGTAGTTGCTGCCTCTCTAGTTGAGTATCCAGTAGTTAACATTTCAGTTGAAGCATGTTCTGTGGTAGTTGGTGCAGACGATGAGATAATGctttgaacaggtacagtagtcagtgggtcagaggttacgTGTTCAGTAGTTAACATTTCAGTTGAAGCATGTTCTGTGGTAGTTGGTGCAGACGATGAGATAATGctttgaacaggtacagtagtcagtgggtcagaggttaggtgttCAGTAGAAACATGCACTGTGGTATTGAACGTAGTTGGTACTGGTGTTGAGGGAGTGTTTCCAACAGTTGTTGCAGGTAAGTAAGCAGTAGTGGCTTGGTTAGCGGTTGAGCGTTCAGGAGTTGCCTCTTCAGTAGAAACACGCACTGTGGTATTGGATGTAGTTGGTTTTTTAACAGGTACagtagtcagtgggtcagaggttaggagtTCAGTAGTTAACTGTTCAGTTGAAGCATgttctgtggtgttgaatgtagttGGTACAGGTGTTGAGGGGGTGttttgaacaggtacagtagtcagtgggtcagaggttaggtgttCAGTAGTTAACTGTTCTGGTGAAGTATGTTCTGTGGTAGTGAATGTAGTTTGTACAGACGATGAGGAAGTATTTTGGACAGGTGCAGTCGAGGCACTTGTAGGTATGTAACTAGTAGTCACTTGGTCTGTGGTAGTGAATATAGCTGGTACAGATGTAGGAGTGTTTTGAACAGGTTCAGTAATTGCTTGATCAGAGCTTGTGTGGTCAGTAGAAACATGCACTGTGGTATTGAAAGTAGCGCTTGTAGGTATGTAACCAGTAGTTGCTTGCTCTCTAGTTAATGTAGTTGGTACAGGCATTGAGATATTGctttgaacaggtacagtagttgctgggtcagaggttaggtgttCATTAGCTAACTGTTCAGTTGAAACATGTTCTGTGGAAATCAATGAAGTTGGTACAGGCATAGAGATATTGCTTTGAACAGGTACAATAGTCGCTTGGTCAGACGTTAGGCGTTCAGTAGTTAACTGTTTAGTAACATTTACTGTGATATTGAATGTAGTTGGTTTTTTAACAGTAGTACCATGTTTGGTAGTTAGGTGTTTTGTAGATAACTGTTCAATTGAACCTTGGTCTGTGGTAGTGAATGTAGTTGGTACTGGTGTAGATGGAGTGTTTTGAACAGGTAAGCCTACAGTAGTCGCTTGGTCAGAGGTTGGTAAAAGATCTAAAAGAATATGTTGGATCTGCACAAAATGGGTAGTTGTTAGCTTAGGTGTTACTTCATCTGTAGTTGACTGTTCAGCAGTGGCAAGC

Function

NR:

description
LOW QUALITY PROTEIN: mucin-5AC-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU247057 False 2923 lncRNA 0.36 4 2875190 2886434
TU247062 True 1429 lncRNA 0.42 3 2875643 2879789

Neighbor

gene id symbol gene type direction distance location
LOC110517891 LOC106606082 coding downstream 6096 2856098 ~ 2869094 (-)
LOC110520772 LOC108270036 coding downstream 270424 2583240 ~ 2604766 (-)
LOC110519055 LOC106606020 coding downstream 293750 2567040 ~ 2581440 (-)
LOC118964348 LOC106605991 coding downstream 321818 2546234 ~ 2553372 (-)
LOC118944776 LOC105018831 coding downstream 353280 2461163 ~ 2521910 (-)
c4b c4 coding upstream 2637 2889071 ~ 2916355 (-)
LOC118964349 LOC106573444 coding upstream 77212 2963646 ~ 2988272 (-)
LOC110520729 LOC106606076 coding upstream 105790 2992224 ~ 2997425 (-)
LOC110506699 LOC106606088 coding upstream 136374 3022808 ~ 3058765 (-)
LOC110506785 LOC106593475 coding upstream 171895 3058329 ~ 3076503 (-)
G216859 NA non-coding downstream 21853 2849231 ~ 2853337 (-)
G216837 fhod3 non-coding downstream 61521 2809997 ~ 2813669 (-)
G216819 NA non-coding downstream 99892 2772490 ~ 2775298 (-)
G216814 NA non-coding downstream 109256 2765075 ~ 2765934 (-)
G216810 NA non-coding downstream 139425 2735534 ~ 2735765 (-)
G216871 NA non-coding upstream 20878 2907312 ~ 2981783 (-)
G216874 NA non-coding upstream 32345 2918779 ~ 2921114 (-)
G216877 LOC106606081 non-coding upstream 42665 2929099 ~ 2931363 (-)
G216892 NA non-coding upstream 72122 2958556 ~ 2959009 (-)
G216893 NA non-coding upstream 73611 2960045 ~ 2960829 (-)
G216811 NA other downstream 136723 2736861 ~ 2738467 (-)
G216059 NA other downstream 749838 2124176 ~ 2125352 (-)
G216066 NA other downstream 753333 2121203 ~ 2121857 (-)
G216038 NA other downstream 816761 2057915 ~ 2058429 (-)
LOC110516567 LOC106595628 other downstream 922602 1916571 ~ 1953363 (-)
G216902 LOC106606079 other upstream 159571 3046005 ~ 3059744 (-)
G217261 NA other upstream 451752 3338186 ~ 3338580 (-)
G217459 NA other upstream 799968 3686402 ~ 3689304 (-)
G218073 LOC106605488 other upstream 1552662 4439096 ~ 4440437 (-)
LOC118944829 LOC106606066 other upstream 1652228 4535483 ~ 4553394 (-)

Expression


Co-expression Network