G216877 (LOC106606081)


Basic Information

Item Value
gene id G216877
gene name LOC106606081
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 2929099 ~ 2931363 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU247077
CCGGCCAACACGTCCTTTCAGTGCTGCCATCTCAGCCACACATCCCCCGGTGCAGGAGGTAGGAACCAGACTGATgcggtgggttagggttagaggaaaGCCAGGCTTCAGCTCGTGGGTCTGGGTCTGCTCCTTGGTGCGGTTGCTAACGTCGCTCTGGGTGTCCTTACTGATGCAGCCAGAGTCAGAAGTGATGAGCACCTTGATGGGGATGGGATGCGGCAGTGTGATGGAGGGTTTGTCTTTGGTTGTGGTCTTTGGACCACTGGCTGTTGGAGGTTTGAGGGGGGTTGAGGGGGCTGGATGTGTCTGATTGGTTGCAGCTGGGCTTATGGCTTTCAGAGTGGGCTTAGGGGTCTCTTTGGTGAGTTTGACGAGCATGGCTGTTGGAGGTTTGAGGGGGGTTGAGGGGGCTGGATGTGTCTGATTGGCTACAGCTGGGCTTAGGGCTTTCACAGTGGGCTTAGGGGTCTCTTTGTTGAGTTTGATGAACATGGCTGTTGGAGGCTTGAGGGGGGTCGAGGGGACTGGATGTGTCTGATTCGCTGCAGCTGGGCTTAGGGTTTTCGGAGTGAGCTTAGGGGTCTCTTTGGTGAGTTTGACGAGCGTGGCTGTTGGAGGTTTGAGGGGGGCAGAGGGGGCTGGATGTGTCTGATTGGCTGCAGTTGGGCTTAGGGCTTTCACAGTGGGCTTAGGGGTCTCTTTGGTGAGTTTGATAAACGTGGCTGTTGGAGGCTTAAGGGGGGTCGAGGGGGCTGGATGTGTCTGATTCGCTGCAGCTGGGCTTAGGGTTTTCACAGTGGGCTTAGGGGTCTCTTTGGTGAGTTTGACGAGCGTGGCTGTTGGAGGTTTGAGGGGGGTCGAGGGGGCTGGATGAATCTGATTGGCTATAGTTGGGCTTAGGGCTTTCGGAGTGGGCTTAGCGGTCTCTTTGGTGAGTTTGACGAGCGTGGCTGTTGGAGGTTTGAGGGGTCTTGAGGGGGCTGGATGTGTCTGATTGGCTATAGTTGGGCTTAGGGTTTTCGGAGTGGGCTTAGGGGTCTCTTTGGTGAGTTTGACGAGCGTGGCTGTTGGAGGTTTGAGGGGGCTTGAGGGGGCTGGATGTGTCTGATTGGCTGCAGTTGGGTTTAGGGCTTTCAGATTGGGCTTAGGGGTCTCTTTGGTGAGTTTCACGAGCGTGGCTGTTGGAGGTTTGAGGGGGCTTGAGGGGGCTGGATGTGTCTGATTGGCTATAGTTGGGCTTAGGGCTTTCAGAGTGGGCTTAGGGGTCTCTTTGTTGAGTTTGACGAGCGTGGCTGTTGGAGGTTTGAGGGGGCTTGAGGGGGCTGGATGTGTCTGATTGAGTGCAGTTGGGTTTAGGGCTTTCAGAGTGGGCTTAGGGGTCTCTTTGGTGACATTCACGAGCGTGGCTGCGGTTTTTGGTTTTGCGAGGGAGAGGGTGAGTAGGACGTAGGGTTTCGGTTCACTTCCTGTTCCTTTGGCGTTTCTTTTCTCATTGGTTACTGGAGTTTGAAGGGAGGGGAACGGGGTTAGCAGGAAGAGGAGGGCTAGAGAAAACAACATTTTGAGGCAGAATAGTTTTTGGATGGTCCGAATTCCAACAGTTCTATAAACTCCTTCCCCAGTGTCTCAGTGGAGAGGAGGCTAGACAATCCACCAGGGTTATCCTACAAATGAAAAAGGAAAAAAACAAGTCAGCCAAGACGAGTTTACTCAGATTACAGTTTATTAACATATGCAAAGCCATTCTGGAACCAAGTCATAAAGTTAGGTTTGTGCTGTGGCCATTGGCTGTAGAGGCATGTAGTGACTACGAGCCAGAGGCTCAGAGCACAACAGATAAGCACTGTGTTCACTACTAGTAGTATATTCTGCGGTGCTGCTGTACATTTTCACTGGAcgtttcctctctccttctccaaacACATACACTGAACCCTTTCCTCACTTTGCTCCTAAACTATTCGTTTTTTGCTCCCTCACCAGGTGAAGAAAGGGGCTATTATACCGTACAAACCCAACTACTTGTAGTAGCTCTCTCTAGAAGTCCTCCTTGAGGTCAAACCCCCACATCCAAACTGACAAAGATTATTTGGAATGCTTTCAATGAGAACATTATGtttatcacaggaggttggtggcaccttaatt

Function

NR:

description
PREDICTED: tenascin-R-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU247077 True 2151 lncRNA 0.52 2 2929099 2931363

Neighbor

gene id symbol gene type direction distance location
c4b c4 coding downstream 12744 2889071 ~ 2916355 (-)
LOC110517891 LOC106606082 coding downstream 60005 2856098 ~ 2869094 (-)
LOC110520772 LOC108270036 coding downstream 324333 2583240 ~ 2604766 (-)
LOC110519055 LOC106606020 coding downstream 347659 2567040 ~ 2581440 (-)
LOC118964348 LOC106605991 coding downstream 375727 2546234 ~ 2553372 (-)
LOC118964349 LOC106573444 coding upstream 32283 2963646 ~ 2988272 (-)
LOC110520729 LOC106606076 coding upstream 60861 2992224 ~ 2997425 (-)
LOC110506699 LOC106606088 coding upstream 91445 3022808 ~ 3058765 (-)
LOC110506785 LOC106593475 coding upstream 126966 3058329 ~ 3076503 (-)
LOC110520730 LOC106573659 coding upstream 160169 3091532 ~ 3098159 (-)
G216874 NA non-coding downstream 7985 2918779 ~ 2921114 (-)
G216868 LOC106605921 non-coding downstream 42665 2875190 ~ 2886434 (-)
G216859 NA non-coding downstream 75762 2849231 ~ 2853337 (-)
G216837 fhod3 non-coding downstream 115430 2809997 ~ 2813669 (-)
G216819 NA non-coding downstream 153801 2772490 ~ 2775298 (-)
G216892 NA non-coding upstream 27193 2958556 ~ 2959009 (-)
G216893 NA non-coding upstream 28682 2960045 ~ 2960829 (-)
G216920 aif1 non-coding upstream 66447 2997810 ~ 3004711 (-)
G216925 NA non-coding upstream 80399 3011762 ~ 3012035 (-)
G216911 NA non-coding upstream 88882 3020245 ~ 3021397 (-)
G216811 NA other downstream 190632 2736861 ~ 2738467 (-)
G216059 NA other downstream 803747 2124176 ~ 2125352 (-)
G216066 NA other downstream 807242 2121203 ~ 2121857 (-)
G216038 NA other downstream 870670 2057915 ~ 2058429 (-)
LOC110516567 LOC106595628 other downstream 976511 1916571 ~ 1953363 (-)
G216902 LOC106606079 other upstream 114642 3046005 ~ 3059744 (-)
G217261 NA other upstream 406823 3338186 ~ 3338580 (-)
G217459 NA other upstream 755039 3686402 ~ 3689304 (-)
G218073 LOC106605488 other upstream 1507733 4439096 ~ 4440437 (-)
LOC118944829 LOC106606066 other upstream 1607299 4535483 ~ 4553394 (-)

Expression


Co-expression Network