G216622 (LOC106606076)


Basic Information

Item Value
gene id G216622
gene name LOC106606076
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 2996227 ~ 2996567 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU246752
TTTCACTTTTAGAGTGATGTTTTTCACATGAACACAACTCCATCCCAACCAGACATTGCAACTATAAAGCCCTTCGTCAGATTTCCTTACATCTCTTAGAGACAGGGACAGGTTTCCAGCCACCACAACATCCGCTCCCGACTCGAAAGCCACACGTTCTGATTTATGGGCCACAGATGGATTATCAGGCCACACCAAGATGTCCTCAGGTTTAGGTGAAAGTTTTGTCCATTTCACTCTGGTTGCTTTGTGGATTGATgtgaaacaggggaggacagctACCTCTTCCTGAGTAGCTGTGATGAATTGTGGCGCATCTACATGAGAACAAGACTCAGCAC

Function

NR:

description
uncharacterized protein LOC110534043

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU246752 True 341 lncRNA 0.43 1 2996227 2996567

Neighbor

gene id symbol gene type direction distance location
LOC110506689 LOC106606075 coding upstream 3542 2988906 ~ 2992685 (+)
LOC110520728 LOC106606086 coding upstream 32306 2950365 ~ 2963921 (+)
LOC110520727 LOC106606081 coding upstream 52354 2924441 ~ 2943873 (+)
LOC110517892 LOC106606083 coding upstream 112625 2871412 ~ 2883602 (+)
fhod3b fhod3 coding upstream 142888 2606023 ~ 2853339 (+)
LOC110506694 aif1 coding downstream 1426 2997993 ~ 3004668 (+)
LOC110506718 LOC102207154 coding downstream 20538 3017105 ~ 3022686 (+)
LOC110518590 LOC106605982 coding downstream 85400 3081967 ~ 3091018 (+)
LOC110506827 LOC106573691 coding downstream 128944 3125511 ~ 3130057 (+)
LOC110506857 mroh1 coding downstream 205857 3202424 ~ 3242211 (+)
G216621 LOC106606076 non-coding upstream 5 2995622 ~ 2996222 (+)
G216619 NA non-coding upstream 1835 2994086 ~ 2994392 (+)
G216602 NA non-coding upstream 14555 2907084 ~ 2981672 (+)
G216644 NA non-coding downstream 41143 3037710 ~ 3039784 (+)
G216642 LOC106606079 non-coding downstream 45100 3041667 ~ 3044041 (+)
G216653 NA non-coding downstream 52726 3049293 ~ 3053091 (+)
G216634 NA non-coding downstream 61987 3058554 ~ 3059729 (+)
G216438 NA other upstream 421328 2572395 ~ 2574899 (+)
G216353 NA other upstream 533483 2461217 ~ 2462744 (+)
ahr1a LOC106605709 other upstream 1010431 1960781 ~ 1987480 (+)
G215843 LOC100136727 other upstream 1190972 1804388 ~ 1805255 (+)
G215830 NA other upstream 1248945 1670411 ~ 1747282 (+)
G216640 LOC106606088 other downstream 43419 3039986 ~ 3041517 (+)
G216673 NA other downstream 109787 3106354 ~ 3108233 (+)
G217146 NA other downstream 483749 3480316 ~ 3481536 (+)
LOC110520752 LOC106606080 other downstream 538610 3534519 ~ 3556267 (+)

Expression


Co-expression Network