G216920 (aif1)


Basic Information

Item Value
gene id G216920
gene name aif1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 2997810 ~ 3004711 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU247144
TGGGATTCTATCAGTTTATCAGAAATGCTGACAATTAATATACTTTAAGTATATTCGATCAAGAGCTTGATATGAGGTTCTGCAGCTGCACACACGTTTTTCACCAACAAATGGACAAGCCTATGGATCAATCAAACCTTTCTTTATTCCTTACAATGAAACCTGTATAACCCAGTTCATTTGACATTCAGTTTTTATATGAACAGATTGGATCCATAACGTAATTGCCTTcagggcagatctgaaaaagtcTTGCGTTGCGGTGGTCCACTCTCTTTGGGCTCCTGGTCTTTCCCTTTCTCCTCAAACATCAAGATCAGTCGGAGTATGGAATTCCTCTTCCCTAGCATCATATTGAGAAAGTCTGTGTAACAGAACGTGTCTCGTGCAGCACCGCCAACCACATCTGACATCATCTTTTTCAGCTCCAAGTGAGTCTTTGCCACACCCAGCTTCTCCAACATGCGCTTCAGCCCCATCATGTCAATGTCTCCTTGGTCATTGAGATCAAATTCCATGTATTTGTTTTTAAACATTTCCAGTTTTGAGCTGAGGTCCTCCTCCTCTGCATATTTAGGATCTGTGAGAAAAACCTCATTGATGGAGTTCAGTTTCACATCCTGCTGAGACTTGAGGAATCCAAATGCTTTCCCTCCTTGCAAATGTTTGTCCATGTCAATCTGCTGTTATTTGGTGGATCATAGAGTAGTCAAAGGGACCAGGGGTGGCTGAGCGTTGTGTCATGAACACTGAAAGTGTAAAGTATGTATCTGTATTTTGTGACAGAAGAGGAAGTGTGGGGAGTTAAAGTTAGAGTGTGGTCATTTGCTAAGTTCCCCTCTCACATCCACTCACAGCCGACggaacagacagagaacaaaGAGAGTCTATGGAGGGGACAATGAACTAAGGGGTTTGCATTTGACATATGCTAGACTAGGCTACCACATAAACACTGCACACTACATTATTGT

Function

symbol description
aif1 Enables actin filament binding activity. Involved in several processes, including positive regulation of cytokine production; regulation of cell migration; and regulation of smooth muscle cell proliferation. Located in cytosol; nucleus; and perinuclear region of cytoplasm. Colocalizes with actin filament and ruffle membrane. Implicated in type 1 diabetes mellitus. Biomarker of Alzheimer's disease and brain infarction.

NR:

description
allograft inflammatory factor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU247144 True 974 lncRNA 0.48 6 2997810 3004711

Neighbor

gene id symbol gene type direction distance location
LOC110520729 LOC106606076 coding downstream 385 2992224 ~ 2997425 (-)
LOC118964349 LOC106573444 coding downstream 9538 2963646 ~ 2988272 (-)
c4b c4 coding downstream 81455 2889071 ~ 2916355 (-)
LOC110517891 LOC106606082 coding downstream 128716 2856098 ~ 2869094 (-)
LOC110520772 LOC108270036 coding downstream 393044 2583240 ~ 2604766 (-)
LOC110506699 LOC106606088 coding upstream 18097 3022808 ~ 3058765 (-)
LOC110506785 LOC106593475 coding upstream 53618 3058329 ~ 3076503 (-)
LOC110520730 LOC106573659 coding upstream 86821 3091532 ~ 3098159 (-)
LOC110506763 pon2 coding upstream 94557 3099268 ~ 3123981 (-)
LOC118936609 LOC106605979 coding upstream 101860 3106571 ~ 3120111 (-)
G216871 NA non-coding downstream 16027 2907312 ~ 2981783 (-)
G216893 NA non-coding downstream 36981 2960045 ~ 2960829 (-)
G216892 NA non-coding downstream 38801 2958556 ~ 2959009 (-)
G216877 LOC106606081 non-coding downstream 66447 2929099 ~ 2931363 (-)
G216874 NA non-coding downstream 76696 2918779 ~ 2921114 (-)
G216925 NA non-coding upstream 7051 3011762 ~ 3012035 (-)
G216911 NA non-coding upstream 15534 3020245 ~ 3021397 (-)
G216934 NA non-coding upstream 60442 3065153 ~ 3065479 (-)
G216938 NA non-coding upstream 69287 3073998 ~ 3074430 (-)
G216942 NA non-coding upstream 77181 3081892 ~ 3082106 (-)
G216811 NA other downstream 259343 2736861 ~ 2738467 (-)
G216059 NA other downstream 872458 2124176 ~ 2125352 (-)
G216066 NA other downstream 875953 2121203 ~ 2121857 (-)
G216038 NA other downstream 939381 2057915 ~ 2058429 (-)
LOC110516567 LOC106595628 other downstream 1045222 1916571 ~ 1953363 (-)
G216902 LOC106606079 other upstream 41294 3046005 ~ 3059744 (-)
G217261 NA other upstream 333475 3338186 ~ 3338580 (-)
G217459 NA other upstream 681691 3686402 ~ 3689304 (-)
G218073 LOC106605488 other upstream 1434385 4439096 ~ 4440437 (-)
LOC118944829 LOC106606066 other upstream 1533951 4535483 ~ 4553394 (-)

Expression


Co-expression Network